RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.930_1 (51 letters) >gnl|CDD|131691 TIGR02643, T_phosphoryl, thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice. Length = 437 Score = 25.5 bits (56), Expect = 3.3 Identities = 9/13 (69%), Positives = 9/13 (69%) Query: 1 MAFFFNNYNLDER 13 MA FFN N DER Sbjct: 43 MAVFFNGMNRDER 55 >gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. Length = 594 Score = 25.0 bits (55), Expect = 4.2 Identities = 7/16 (43%), Positives = 9/16 (56%) Query: 2 AFFFNNYNLDERGRFF 17 A + +NL ERG F Sbjct: 491 ATAYALWNLQERGVMF 506 >gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. Length = 505 Score = 24.9 bits (54), Expect = 4.7 Identities = 8/12 (66%), Positives = 10/12 (83%) Query: 11 DERGRFFCYFLS 22 DE+GR FCY L+ Sbjct: 273 DEKGRIFCYALT 284 >gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional. Length = 339 Score = 25.1 bits (54), Expect = 4.7 Identities = 12/26 (46%), Positives = 17/26 (65%) Query: 21 LSLLIVDTLRSFSLFQHLWLKRLSSI 46 L LLI+D+L+SF H L +L S+ Sbjct: 134 LVLLIIDSLKSFDDITHNILDKLRSL 159 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.338 0.148 0.471 Gapped Lambda K H 0.267 0.0752 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 841,346 Number of extensions: 35490 Number of successful extensions: 115 Number of sequences better than 10.0: 1 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 12 Length of query: 51 Length of database: 5,994,473 Length adjustment: 24 Effective length of query: 27 Effective length of database: 5,475,881 Effective search space: 147848787 Effective search space used: 147848787 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 50 (23.0 bits)