BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.930_1
         (51 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.930_1 
          Length = 51

 Score =  102 bits (255), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 1  MAFFFNNYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLKRLSSILVQND 51
          MAFFFNNYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLKRLSSILVQND
Sbjct: 1  MAFFFNNYNLDERGRFFCYFLSLLIVDTLRSFSLFQHLWLKRLSSILVQND 51


>gi|254781113|ref|YP_003065526.1| amino acid ABC transporter (permease) [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 226

 Score = 21.6 bits (44), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 16 FFCYFLSLLIVDTLRSFSLFQHLWLKRLSSILVQ 49
          FF   + +   DT+ S  +  ++W+ R + +LVQ
Sbjct: 40 FFIAVIRIFFSDTIISLIMHFYVWIFRGTPLLVQ 73


>gi|255764488|ref|YP_003065099.2| flagellar motor protein MotA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 290

 Score = 21.2 bits (43), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 11  DERGRFFCYFLSLLIVDTLRSFSL 34
           +E   F C ++ ++IV   RS+ +
Sbjct: 120 NELTTFICDYMRMIIVGNARSYEI 143


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 20.4 bits (41), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 14  GRFFCYFLSLLIVDTLRSFSLFQHLW 39
           GR+F   ++ ++++    F+L   LW
Sbjct: 156 GRYFIASIAPIVINVFPIFALTYALW 181


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.338    0.148    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,314
Number of Sequences: 1233
Number of extensions: 949
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 51
length of database: 328,796
effective HSP length: 24
effective length of query: 27
effective length of database: 299,204
effective search space:  8078508
effective search space used:  8078508
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 31 (16.5 bits)