Query 537021.9.peg.937_1 Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 05:39:17 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_937.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3bz1_I Photosystem II reaction 16.7 65 0.0027 14.6 2.2 18 16-33 1-18 (38) 2 3faj_A ORF131, putative unchar 12.0 67 0.0028 14.6 1.2 17 4-20 37-53 (151) 3 2fsv_C NAD(P) transhydrogenase 7.7 88 0.0037 14.0 0.5 16 32-47 166-183 (203) 4 1djl_A Transhydrogenase DIII; 7.2 95 0.004 13.8 0.5 17 31-47 164-182 (207) 5 2bru_C NAD(P) transhydrogenase 6.1 1.2E+02 0.0049 13.4 0.4 16 32-47 150-167 (186) 6 1d4o_A NADP(H) transhydrogenas 5.9 1.2E+02 0.0052 13.2 0.5 17 31-47 141-159 (184) 7 1pno_A NAD(P) transhydrogenase 5.9 1.2E+02 0.0051 13.3 0.4 16 32-47 143-160 (180) 8 2ke4_A CDC42-interacting prote 4.3 1.4E+02 0.0059 13.0 -0.1 16 31-46 42-57 (98) 9 2jf1_T Integrin beta-2 subunit 4.2 1.8E+02 0.0074 12.4 0.4 7 39-45 16-22 (35) 10 1tii_C LT-IIB, heat labIle ent 3.8 1.7E+02 0.0071 12.5 0.0 6 7-12 41-46 (53) No 1 >3bz1_I Photosystem II reaction center protein I; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_I* 2axt_I* 3bz2_I* 3kzi_I* 3a0b_I* 3a0h_I* Probab=16.69 E-value=65 Score=14.64 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 367799999999998500 Q 537021.9.peg.9 16 MSTLHLFILIKVILFHSM 33 (48) Q Consensus 16 mstlhlfilikvilfhsm 33 (48) |-||.+|..+-|+.|-|. T Consensus 1 MltLKi~Vy~vV~fFv~l 18 (38) T 3bz1_I 1 METLKITVYIVVTFFVLL 18 (38) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEHHHHHHHHHHH T ss_conf 913886426789999999 No 2 >3faj_A ORF131, putative uncharacterized protein; archaeal virus, extremophiles, bicaudavirus, structural protein, DNA-binding protein; 1.70A {Acidianus two-tailed virus} Probab=12.00 E-value=67 Score=14.59 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=12.0 Q ss_pred HHHHHHHCCCCHHHHHH Q ss_conf 67767641700136779 Q 537021.9.peg.9 4 SILDGFFSNKSRMSTLH 20 (48) Q Consensus 4 sildgffsnksrmstlh 20 (48) .|||+||+|+--...+. T Consensus 37 kIL~~f~sg~~gyP~vS 53 (151) T 3faj_A 37 KILDMFENGQLGYPEVT 53 (151) T ss_dssp HHHHHHHTTCCEETHHH T ss_pred HHHHHHHCCCCCCCEEE T ss_conf 99999975877886345 No 3 >2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C* Probab=7.65 E-value=88 Score=13.99 Aligned_cols=16 Identities=44% Similarity=0.854 Sum_probs=10.1 Q ss_pred HC-CHHH-CCCCEECCCC Q ss_conf 00-0010-0585112347 Q 537021.9.peg.9 32 SM-TGYY-IDNPLFCSEK 47 (48) Q Consensus 32 sm-tgyy-idnplfcsek 47 (48) || +||- ||||||-.++ T Consensus 166 s~~~Gyagv~NpLf~~~n 183 (203) T 2fsv_C 166 SMASGYAGVENELFFRNN 183 (203) T ss_dssp SSCCCTTCCCCGGGGSTT T ss_pred CCCCCCCCCCCCCEECCC T ss_conf 878875678775553588 No 4 >1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A* Probab=7.23 E-value=95 Score=13.82 Aligned_cols=17 Identities=41% Similarity=0.894 Sum_probs=10.9 Q ss_pred HHCC-HHH-CCCCEECCCC Q ss_conf 5000-010-0585112347 Q 537021.9.peg.9 31 HSMT-GYY-IDNPLFCSEK 47 (48) Q Consensus 31 hsmt-gyy-idnplfcsek 47 (48) .||. ||- ||||||-.++ T Consensus 164 Rsm~~GyaGv~NpLF~~~n 182 (207) T 1djl_A 164 RSLGVGYAAVDNPIFYKPN 182 (207) T ss_dssp SSSCCCTTCCCCGGGGSTT T ss_pred CCCCCCCCCCCCCCEECCC T ss_conf 7787885778673344488 No 5 >2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli} Probab=6.05 E-value=1.2e+02 Score=13.36 Aligned_cols=16 Identities=63% Similarity=1.068 Sum_probs=10.0 Q ss_pred HC-CHHH-CCCCEECCCC Q ss_conf 00-0010-0585112347 Q 537021.9.peg.9 32 SM-TGYY-IDNPLFCSEK 47 (48) Q Consensus 32 sm-tgyy-idnplfcsek 47 (48) || +||- |+||||-.++ T Consensus 150 sm~~GyaGv~NpLF~~~n 167 (186) T 2bru_C 150 SMNTGYAGVQNPLFFKEN 167 (186) T ss_dssp SSCCSSCCCSCTTTBSSS T ss_pred CCCCCCCCCCCCCEECCC T ss_conf 777886788775367488 No 6 >1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4 Probab=5.89 E-value=1.2e+02 Score=13.24 Aligned_cols=17 Identities=41% Similarity=0.894 Sum_probs=10.8 Q ss_pred HHCC-HH-HCCCCEECCCC Q ss_conf 5000-01-00585112347 Q 537021.9.peg.9 31 HSMT-GY-YIDNPLFCSEK 47 (48) Q Consensus 31 hsmt-gy-yidnplfcsek 47 (48) .||. || -||||||-.++ T Consensus 141 Rs~~~GyaGv~NpLF~~~n 159 (184) T 1d4o_A 141 RSLGVGYAAVDNPIFYKPN 159 (184) T ss_dssp SSSCCCTTCCCCGGGGSTT T ss_pred CCCCCCCCCCCCCCEECCC T ss_conf 7887885778673355488 No 7 >1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C* Probab=5.88 E-value=1.2e+02 Score=13.27 Aligned_cols=16 Identities=44% Similarity=0.854 Sum_probs=10.1 Q ss_pred HC-CHHH-CCCCEECCCC Q ss_conf 00-0010-0585112347 Q 537021.9.peg.9 32 SM-TGYY-IDNPLFCSEK 47 (48) Q Consensus 32 sm-tgyy-idnplfcsek 47 (48) || +||- |+||||-.++ T Consensus 143 sm~~GyaGv~NpLF~~~n 160 (180) T 1pno_A 143 SMASGYAGVENELFFRNN 160 (180) T ss_dssp SSCCCTTCCCCGGGTSTT T ss_pred CCCCCCCCCCCCCEECCC T ss_conf 888886878776256388 No 8 >2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens} Probab=4.25 E-value=1.4e+02 Score=12.95 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=11.9 Q ss_pred HHCCHHHCCCCEECCC Q ss_conf 5000010058511234 Q 537021.9.peg.9 31 HSMTGYYIDNPLFCSE 46 (48) Q Consensus 31 hsmtgyyidnplfcse 46 (48) -.|-+-|.+||-|+.. T Consensus 42 ~KM~~vY~~nP~~Gd~ 57 (98) T 2ke4_A 42 KKMKDVYEKTPQMGDP 57 (98) T ss_dssp HHHHHHHHHCGGGCCG T ss_pred HHHHHHHHHCCCCCCH T ss_conf 9999999868777887 No 9 >2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens} Probab=4.25 E-value=1.8e+02 Score=12.44 Aligned_cols=7 Identities=86% Similarity=1.260 Sum_probs=0.0 Q ss_pred CCCEECC Q ss_conf 5851123 Q 537021.9.peg.9 39 DNPLFCS 45 (48) Q Consensus 39 dnplfcs 45 (48) |||||-+ T Consensus 16 ~NPlyk~ 22 (35) T 2jf1_T 16 DNPLFKS 22 (35) T ss_pred CCCCCCC T ss_conf 8965226 No 10 >1tii_C LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase, ADP-ribosylation, ganglioside receptor; 2.25A {Escherichia coli} SCOP: d.166.1.1 Probab=3.85 E-value=1.7e+02 Score=12.54 Aligned_cols=6 Identities=100% Similarity=1.735 Sum_probs=0.0 Q ss_pred HHHHCC Q ss_conf 676417 Q 537021.9.peg.9 7 DGFFSN 12 (48) Q Consensus 7 dgffsn 12 (48) ||||+| T Consensus 41 d~f~~~ 46 (53) T 1tii_C 41 DGFFSN 46 (53) T ss_dssp ------ T ss_pred CCCEEC T ss_conf 772323 Done!