Query 537021.9.peg.942_1
Match_columns 50
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 03:34:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_942.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yku_A Hypothetical protein PX 15.7 39 0.0017 15.4 0.9 41 7-47 66-115 (136)
2 3g1g_A GAG polyprotein, capsid 5.6 1.7E+02 0.0071 12.1 1.6 14 35-48 30-43 (87)
3 2euc_A Hypothetical protein YF 4.7 1E+02 0.0042 13.2 -0.6 15 28-43 76-90 (130)
4 3kz5_E Protein SOPB; partition 4.6 31 0.0013 15.9 -3.3 20 14-33 28-47 (52)
5 2e62_A Protein AT5G25060; CWF2 4.4 2.1E+02 0.0086 11.6 1.6 14 7-20 43-56 (61)
6 3da5_A Argonaute; PAZ domain, 3.7 3.9 0.00016 20.6 -8.5 21 5-25 32-52 (128)
7 1pp9_J Ubiquinol-cytochrome C 3.5 2.5E+02 0.01 11.2 0.8 10 1-10 13-22 (62)
8 3bww_A Protein of unknown func 3.1 2.7E+02 0.011 11.0 0.9 17 29-45 105-121 (307)
9 2osz_A Nucleoporin P58/P45; NP 2.9 2.4E+02 0.01 11.3 0.0 39 7-45 9-52 (93)
10 1xk5_A Snurportin-1; protein-R 2.7 79 0.0033 13.8 -2.7 6 44-49 75-80 (204)
No 1
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis}
Probab=15.67 E-value=39 Score=15.35 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH--------HHHHHHCCCCEEEEEECCHHHHHHHH-HHHH
Q ss_conf 89998877899--------99996212102012215224789999-9987
Q 537021.9.peg.9 7 MFRKVACERKR--------VYKSCVEQNEVLLTLLPFPLTAQMLS-IIDC 47 (50)
Q Consensus 7 mfrkvacerkr--------vykscveqnevlltllpfpltaqmls-iidc 47 (50)
.-.|+|-||-. ||..++..+|++-.+.--|++.+-|. +||-
T Consensus 66 la~KiA~ER~eA~~NIgeFVYN~N~GR~ei~~~l~~~~~~~~eL~~~I~k 115 (136)
T 1yku_A 66 TSKKIARERIDAKVNIAEFIHNTNVAKIEIMNILTLLNPDLQQYQALVKK 115 (136)
T ss_dssp HHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999865125799999872230999999998289999999999999
No 2
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=5.57 E-value=1.7e+02 Score=12.06 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 22478999999876
Q 537021.9.peg.9 35 FPLTAQMLSIIDCI 48 (50)
Q Consensus 35 fpltaqmlsiidci 48 (50)
.|-.||-.-||||.
T Consensus 30 Lp~~A~~pVi~DCl 43 (87)
T 3g1g_A 30 LPPSARAPVIIDCF 43 (87)
T ss_dssp SCGGGHHHHHHHHH
T ss_pred CCHHHCCCCHHHHH
T ss_conf 86676388199999
No 3
>2euc_A Hypothetical protein YFMB; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus subtilis} SCOP: a.249.1.1
Probab=4.68 E-value=1e+02 Score=13.24 Aligned_cols=15 Identities=53% Similarity=0.846 Sum_probs=8.7
Q ss_pred EEEEEECCHHHHHHHH
Q ss_conf 2012215224789999
Q 537021.9.peg.9 28 VLLTLLPFPLTAQMLS 43 (50)
Q Consensus 28 vlltllpfpltaqmls 43 (50)
-|.+|+|| .|+.|+.
T Consensus 76 YL~~L~p~-iT~DM~~ 90 (130)
T 2euc_A 76 YLSTLLPY-VTADMFE 90 (130)
T ss_dssp HHHHHGGG-CCHHHHH
T ss_pred HHHHHHHH-HHHHHHH
T ss_conf 99999999-8899999
No 4
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=4.63 E-value=31 Score=15.94 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 78999999621210201221
Q 537021.9.peg.9 14 ERKRVYKSCVEQNEVLLTLL 33 (50)
Q Consensus 14 erkrvykscveqnevlltll 33 (50)
.|.|+-+.|.|++|.+|.-|
T Consensus 28 Drsr~p~~Cie~ieail~~l 47 (52)
T 3kz5_E 28 DRSRVPTECIEKIEAILKEL 47 (52)
T ss_dssp ETTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 31118689999999999983
No 5
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=4.41 E-value=2.1e+02 Score=11.62 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89998877899999
Q 537021.9.peg.9 7 MFRKVACERKRVYK 20 (50)
Q Consensus 7 mfrkvacerkrvyk 20 (50)
.-||||-.|||.-.
T Consensus 43 ierkVa~hRkrLes 56 (61)
T 2e62_A 43 IERKVEINRKRLEV 56 (61)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999977
No 6
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=3.72 E-value=3.9 Score=20.60 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 678999887789999996212
Q 537021.9.peg.9 5 NSMFRKVACERKRVYKSCVEQ 25 (50)
Q Consensus 5 nsmfrkvacerkrvykscveq 25 (50)
|-|.|..|.+.|-|||.|.+.
T Consensus 32 ~~~l~dias~~k~vykp~f~~ 52 (128)
T 3da5_A 32 TILLRDIASEHKVVYKPIFKR 52 (128)
T ss_dssp TEEEEETTSSSCCEEEECBCT
T ss_pred CEEHHHHCCHHHHHHHHHHHH
T ss_conf 330886413124577688998
No 7
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa protein; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 1bcc_J* 2bcc_J* 3bcc_J* 1qcr_J* ...
Probab=3.53 E-value=2.5e+02 Score=11.21 Aligned_cols=10 Identities=40% Similarity=0.643 Sum_probs=5.6
Q ss_pred CCCHHHHHHH
Q ss_conf 9523678999
Q 537021.9.peg.9 1 VFARNSMFRK 10 (50)
Q Consensus 1 vfarnsmfrk 10 (50)
+|-|||.|--
T Consensus 13 lfrRnStf~~ 22 (62)
T 1pp9_J 13 LFRRTSTFAL 22 (62)
T ss_dssp TTSSHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9971589999
No 8
>3bww_A Protein of unknown function DUF692/COG3220; YP_719350.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Haemophilus somnus 129PT}
Probab=3.13 E-value=2.7e+02 Score=10.99 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=11.2
Q ss_pred EEEEECCHHHHHHHHHH
Q ss_conf 01221522478999999
Q 537021.9.peg.9 29 LLTLLPFPLTAQMLSII 45 (50)
Q Consensus 29 lltllpfpltaqmlsii 45 (50)
+.-|||.|.|...+.++
T Consensus 105 ~~dLLPlP~T~e~l~~v 121 (307)
T 3bww_A 105 LYDLLPMPFTDEAVKHT 121 (307)
T ss_dssp ---CCCBCCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH
T ss_conf 47667867549999999
No 9
>2osz_A Nucleoporin P58/P45; NPC, structure, structural protein; 2.85A {Rattus norvegicus}
Probab=2.94 E-value=2.4e+02 Score=11.27 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHH---HHHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHH
Q ss_conf 899988---7789999996212102012215--22478999999
Q 537021.9.peg.9 7 MFRKVA---CERKRVYKSCVEQNEVLLTLLP--FPLTAQMLSII 45 (50)
Q Consensus 7 mfrkva---cerkrvykscveqnevlltllp--fpltaqmlsii 45 (50)
.|.+++ -+|-..||.-+|+-|--|..++ -++|.|-|+-+
T Consensus 9 YF~~lv~~fe~rl~~yr~qIE~~E~hl~s~s~~~~~TPqdL~~~ 52 (93)
T 2osz_A 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMA 52 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999999999999999999999999984468888999999999
No 10
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=2.69 E-value=79 Score=13.79 Aligned_cols=6 Identities=83% Similarity=1.929 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 998762
Q 537021.9.peg.9 44 IIDCIY 49 (50)
Q Consensus 44 iidciy 49 (50)
|.||||
T Consensus 75 ILDCIy 80 (204)
T 1xk5_A 75 ILDCIY 80 (204)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 899998
Done!