RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= 537021.9.peg.942_1 (50 letters) >gnl|CDD|37043 KOG1832, KOG1832, KOG1832, HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]. Length = 1516 Score = 29.3 bits (65), Expect = 0.25 Identities = 9/39 (23%), Positives = 15/39 (38%) Query: 2 FARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQ 40 F+ + FR + E V+ L T L +T+ Sbjct: 1192 FSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.139 0.416 Gapped Lambda K H 0.267 0.0524 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 557,471 Number of extensions: 17031 Number of successful extensions: 41 Number of sequences better than 10.0: 1 Number of HSP's gapped: 41 Number of HSP's successfully gapped: 1 Length of query: 50 Length of database: 6,263,737 Length adjustment: 23 Effective length of query: 27 Effective length of database: 5,766,730 Effective search space: 155701710 Effective search space used: 155701710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 51 (23.9 bits)