RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.942_1
         (50 letters)



>gnl|CDD|37043 KOG1832, KOG1832, KOG1832, HIV-1 Vpr-binding protein [Cell cycle
            control, cell division, chromosome partitioning].
          Length = 1516

 Score = 29.3 bits (65), Expect = 0.25
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 2    FARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQ 40
            F+ +  FR +  E        V+    L T L   +T+ 
Sbjct: 1192 FSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 557,471
Number of extensions: 17031
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 50
Length of database: 6,263,737
Length adjustment: 23
Effective length of query: 27
Effective length of database: 5,766,730
Effective search space: 155701710
Effective search space used: 155701710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.9 bits)