RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.942_1
         (50 letters)



>gnl|CDD|152330 pfam11894, DUF3414, Protein of unknown function (DUF3414).  This
            family of proteins are functionally uncharacterized. This
            protein is found in eukaryotes. Proteins in this family
            are typically between 764 to 2011 amino acids in length.
            This protein has a conserved LLG sequence motif.
          Length = 1611

 Score = 29.2 bits (66), Expect = 0.25
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 1    VFARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQMLSIIDCIYK 50
            V  RN   R++   + +   S V+  +VLLT  P     +   I++ +  
Sbjct: 1218 VTERNRS-RELRSAQLKALHSWVQLVQVLLTDCPLSGDRRSNFILEILQA 1266


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 728,205
Number of extensions: 26443
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 50
Length of database: 5,994,473
Length adjustment: 23
Effective length of query: 27
Effective length of database: 5,497,489
Effective search space: 148432203
Effective search space used: 148432203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.1 bits)