BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.942_1
         (50 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.942_1 
          Length = 50

 Score =  103 bits (258), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  VFARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQMLSIIDCIYK 50
          VFARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQMLSIIDCIYK
Sbjct: 1  VFARNSMFRKVACERKRVYKSCVEQNEVLLTLLPFPLTAQMLSIIDCIYK 50


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score = 21.2 bits (43), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 17/25 (68%), Gaps = 5/25 (20%)

Query: 20  KSCVEQNEVLLTL-----LPFPLTA 39
           ++C ++N++LLT      + FP++A
Sbjct: 688 ETCTQENDILLTTKLGQCVRFPISA 712


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,320
Number of Sequences: 1233
Number of extensions: 603
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 50
length of database: 328,796
effective HSP length: 23
effective length of query: 27
effective length of database: 300,437
effective search space:  8111799
effective search space used:  8111799
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 31 (16.5 bits)