Query 537021.9.peg.945_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 04:20:28 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_945.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1f8f_A Benzyl alcohol dehydro 14.3 68 0.002 15.4 1.0 11 17-27 169-179 (220) 2 >2ds2_A Sweet protein mabinlin 9.2 1.3E+02 0.004 13.8 1.2 11 16-26 16-26 (33) 3 >2bc4_A HLA class II histocomp 9.1 1.1E+02 0.0032 14.3 0.6 27 3-29 52-86 (91) 4 >3kk4_A Uncharacterized protei 8.9 1.6E+02 0.0047 13.4 1.5 31 2-32 16-54 (112) 5 >1xc0_A Pardaxin P-4, PA4; BEN 7.2 1.7E+02 0.0051 13.2 1.0 13 21-33 5-17 (33) 6 >2fm9_A Cell invasion protein 6.9 1.8E+02 0.0052 13.2 0.9 24 13-36 67-90 (90) 7 >1ea5_A Acetylcholinesterase; 6.6 2.1E+02 0.0062 12.8 1.2 14 15-28 89-105 (108) 8 >2qiz_A Ubiquitin conjugation 5.9 2.1E+02 0.0063 12.7 1.0 16 7-22 147-162 (296) 9 >1sch_A PNP, peanut peroxidase 5.4 2.6E+02 0.0077 12.2 1.3 14 18-31 8-21 (51) 10 >2ewf_A Nicking endonuclease N 4.8 2.7E+02 0.008 12.2 0.9 24 1-24 15-38 (150) No 1 >>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} (A:1-166,A:318-371) Probab=14.26 E-value=68 Score=15.39 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=8.9 Q ss_pred HHHHHHHHHHC Q ss_conf 99999799723 Q 537021.9.peg.9 17 ICQQFIPRLIN 27 (39) Q Consensus 17 icqqfiprlin 27 (39) +-|.|||+||. T Consensus 169 ~p~~~ip~l~~ 179 (220) T 1f8f_A 169 SPKKFIPELVR 179 (220) T ss_dssp CHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 57999999999 No 2 >>2ds2_A Sweet protein mabinlin-2 chain A; plant protein, SEED storage protein; 1.70A {Capparis masaikai} (A:) Probab=9.18 E-value=1.3e+02 Score=13.80 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=8.2 Q ss_pred HHHHHHHHHHH Q ss_conf 99999979972 Q 537021.9.peg.9 16 QICQQFIPRLI 26 (39) Q Consensus 16 qicqqfiprli 26 (39) ..||.||.|-. T Consensus 16 racqrfihrra 26 (33) T 2ds2_A 16 RACQRFIHRRA 26 (33) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 3 >>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_A 1k8i_A* (A:1-91) Probab=9.08 E-value=1.1e+02 Score=14.32 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=20.1 Q ss_pred CCEECCHHHHH--------HHHHHHHHHHHHHCCH Q ss_conf 30102079999--------9999999979972382 Q 537021.9.peg.9 3 TTIRLPNFLWV--------FIQICQQFIPRLINNP 29 (39) Q Consensus 3 ttirlpnflwv--------fiqicqqfiprlinnp 29 (39) +-.|||.|-=. -|++|.+..--+|.++ T Consensus 52 ~V~~lP~F~~~~~~qga~~~ia~~K~nL~~~ik~~ 86 (91) T 2bc4_A 52 RVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQI 86 (91) T ss_dssp EEESSGGGTGGGCCCTTHHHHHHHHHHHHHHHHTS T ss_pred EEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99978344444650528999999999999999988 No 4 >>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: CME; 1.95A {Bordetella pertussis tohama I} (A:14-125) Probab=8.93 E-value=1.6e+02 Score=13.37 Aligned_cols=31 Identities=29% Similarity=0.642 Sum_probs=19.2 Q ss_pred CCCEECCHHHHHHH-HHHH-------HHHHHHHCCHHHH Q ss_conf 73010207999999-9999-------9979972382211 Q 537021.9.peg.9 2 STTIRLPNFLWVFI-QICQ-------QFIPRLINNPLEK 32 (39) Q Consensus 2 sttirlpnflwvfi-qicq-------qfiprlinnplek 32 (39) .|.|||-+..|--+ +|+. +||-++-..-+++ T Consensus 16 ~TSirLE~~FW~~LeeIA~~~g~tv~~Lis~i~~E~~~~ 54 (112) T 3kk4_A 16 ATSVRLEQLFWDVLEEIAARDGXRVTQLIERLYDELVQY 54 (112) T ss_dssp EEEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH T ss_pred EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 405550899999999999984998999999999999986 No 5 >>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} (A:) Probab=7.18 E-value=1.7e+02 Score=13.21 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=10.5 Q ss_pred HHHHHHCCHHHHH Q ss_conf 9799723822112 Q 537021.9.peg.9 21 FIPRLINNPLEKD 33 (39) Q Consensus 21 fiprlinnplekd 33 (39) .||..|..||-|. T Consensus 5 lipkiissplfkt 17 (33) T 1xc0_A 5 LIPKIISSPLFKT 17 (33) T ss_dssp SHHHHTTTTTHHH T ss_pred HHHHHHCCHHHHH T ss_conf 5069873588999 No 6 >>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial; 2.00A {Salmonella typhimurium} (A:1-90) Probab=6.88 E-value=1.8e+02 Score=13.15 Aligned_cols=24 Identities=17% Similarity=0.564 Sum_probs=19.0 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 999999999799723822112432 Q 537021.9.peg.9 13 VFIQICQQFIPRLINNPLEKDSKF 36 (39) Q Consensus 13 vfiqicqqfiprlinnplekdskf 36 (39) ..+.|.+|+-.+.|+.-|.++|-| T Consensus 67 ~L~ki~~eYtaqI~KDgL~ekSAF 90 (90) T 2fm9_A 67 LLMKVGAEYTAQIIKDGLKEKSAF 90 (90) T ss_dssp HHHHHHHHHHHHHHHHCCCSSCSS T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999999999999987522333467 No 7 >>1ea5_A Acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} (A:327-413,A:517-537) Probab=6.59 E-value=2.1e+02 Score=12.76 Aligned_cols=14 Identities=50% Similarity=1.274 Sum_probs=9.9 Q ss_pred HHHH---HHHHHHHHCC Q ss_conf 9999---9997997238 Q 537021.9.peg.9 15 IQIC---QQFIPRLINN 28 (39) Q Consensus 15 iqic---qqfiprlinn 28 (39) +|.| .||.|+|.|. T Consensus 89 ~~~~~~~~~~~~~~~~~ 105 (108) T 1ea5_A 89 VQMCVFWNQFLPKLLNA 105 (108) T ss_dssp HHHHHHHHTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99989999999998875 No 8 >>2qiz_A Ubiquitin conjugation factor E4; helical hairpin, ligase; 2.56A {Saccharomyces cerevisiae} PDB: 2qj0_A (A:187-482) Probab=5.95 E-value=2.1e+02 Score=12.70 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=12.8 Q ss_pred CCHHHHHHHHHHHHHH Q ss_conf 2079999999999997 Q 537021.9.peg.9 7 LPNFLWVFIQICQQFI 22 (39) Q Consensus 7 lpnflwvfiqicqqfi 22 (39) .-|+.||.+..|+-|. T Consensus 147 mlNl~~VLlrL~~Pf~ 162 (296) T 2qiz_A 147 MSNITLLLVRFSQPFL 162 (296) T ss_dssp HHHHHHHHHHHHGGGG T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999745450 No 9 >>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} (A:169-219) Probab=5.38 E-value=2.6e+02 Score=12.24 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.4 Q ss_pred HHHHHHHHHCCHHH Q ss_conf 99997997238221 Q 537021.9.peg.9 18 CQQFIPRLINNPLE 31 (39) Q Consensus 18 cqqfiprlinnple 31 (39) |..|-.||-|.|-. T Consensus 8 C~~f~~Rly~Dp~~ 21 (51) T 1sch_A 8 CTAFRTRIYNESNI 21 (51) T ss_dssp HHHHHHHHHHCSSS T ss_pred CCCCCCCCCCCCCC T ss_conf 21568986678767 No 10 >>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP} (A:1-132,A:286-303) Probab=4.78 E-value=2.7e+02 Score=12.16 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=18.0 Q ss_pred CCCCEECCHHHHHHHHHHHHHHHH Q ss_conf 973010207999999999999799 Q 537021.9.peg.9 1 MSTTIRLPNFLWVFIQICQQFIPR 24 (39) Q Consensus 1 msttirlpnflwvfiqicqqfipr 24 (39) .+||.|-|+++--++.+-++|--+ T Consensus 15 itTt~RnP~ri~~~L~vL~~f~g~ 38 (150) T 2ewf_A 15 VSCSPRSPEKIQPELKVLANFEGS 38 (150) T ss_dssp CCCTTSSGGGHHHHHHHHGGGTTC T ss_pred ECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 328888989999999999986186 Done!