Query 537021.9.peg.945_1 Match_columns 39 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 03:50:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_945.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ds2_A Sweet protein mabinlin- 9.2 94 0.004 13.8 1.2 11 16-26 16-26 (33) 2 1xc0_A Pardaxin P-4, PA4; BEND 7.2 1.2E+02 0.0051 13.2 1.0 13 21-33 5-17 (33) 3 3n1h_A Stwhy2; single-stranded 6.8 1.5E+02 0.0063 12.7 2.4 23 11-33 146-174 (178) 4 3mhs_E SAGA-associated factor 6.8 50 0.0021 15.3 -1.1 14 24-37 63-76 (96) 5 2d7c_C RAB11 family-interactin 5.2 1.6E+02 0.0066 12.6 0.7 18 18-35 20-37 (42) 6 3ogi_A ESXP, putative ESAT-6-l 4.8 1.4E+02 0.0059 12.9 0.2 12 17-28 49-60 (101) 7 1tc3_C Protein (TC3 transposas 4.2 2E+02 0.0085 12.0 0.7 14 20-33 36-49 (51) 8 1m48_A Interleukin-2; four-hel 3.8 2.4E+02 0.01 11.6 1.8 22 4-25 111-132 (133) 9 2g48_C Islet amyloid polypepti 3.6 1.6E+02 0.0069 12.5 -0.3 8 4-11 9-16 (37) 10 3by6_A Predicted transcription 3.5 2.6E+02 0.011 11.4 2.4 32 1-36 4-35 (126) No 1 >2ds2_A Sweet protein mabinlin-2 chain A; plant protein, SEED storage protein; 1.70A {Capparis masaikai} Probab=9.18 E-value=94 Score=13.80 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=8.2 Q ss_pred HHHHHHHHHHH Q ss_conf 99999979972 Q 537021.9.peg.9 16 QICQQFIPRLI 26 (39) Q Consensus 16 qicqqfiprli 26 (39) ..||.||.|-. T Consensus 16 racqrfihrra 26 (33) T 2ds2_A 16 RACQRFIHRRA 26 (33) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 2 >1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A Probab=7.18 E-value=1.2e+02 Score=13.21 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=10.5 Q ss_pred HHHHHHCCHHHHH Q ss_conf 9799723822112 Q 537021.9.peg.9 21 FIPRLINNPLEKD 33 (39) Q Consensus 21 fiprlinnplekd 33 (39) .||..|..||-|. T Consensus 5 lipkiissplfkt 17 (33) T 1xc0_A 5 LIPKIISSPLFKT 17 (33) T ss_dssp SHHHHTTTTTHHH T ss_pred HHHHHHCCHHHHH T ss_conf 5069873588999 No 3 >3n1h_A Stwhy2; single-stranded DNA binding protein, plant, potato, DNA binding protein; 2.20A {Solanum tuberosum} PDB: 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A* Probab=6.80 E-value=1.5e+02 Score=12.69 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHH------CCHHHHH Q ss_conf 9999999999979972------3822112 Q 537021.9.peg.9 11 LWVFIQICQQFIPRLI------NNPLEKD 33 (39) Q Consensus 11 lwvfiqicqqfiprli------nnplekd 33 (39) .-||..+|+--+|+|+ |.|||.. T Consensus 146 f~v~~~~~~~~LP~LlGW~~~~~~~~~~~ 174 (178) T 3n1h_A 146 FAVMRTAFSFALPHIMGWDRFTNRPLEHH 174 (178) T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCC----- T ss_pred HHHHHHHHHHHHHHHHCHHHHHCCCCCCC T ss_conf 99999999985146518477747964212 No 4 >3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 3m99_D Probab=6.79 E-value=50 Score=15.28 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=9.7 Q ss_pred HHHCCHHHHHHHHC Q ss_conf 97238221124321 Q 537021.9.peg.9 24 RLINNPLEKDSKFQ 37 (39) Q Consensus 24 rlinnplekdskfq 37 (39) ++|.|||+++..|. T Consensus 63 ~ii~~pl~~~~~YR 76 (96) T 3mhs_E 63 QLIEDPLDKPIQYR 76 (96) T ss_dssp CCCSSTTSSSCCCE T ss_pred HHHCCCCCCCCCEE T ss_conf 76607667765420 No 5 >2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1 Probab=5.24 E-value=1.6e+02 Score=12.61 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.6 Q ss_pred HHHHHHHHHCCHHHHHHH Q ss_conf 999979972382211243 Q 537021.9.peg.9 18 CQQFIPRLINNPLEKDSK 35 (39) Q Consensus 18 cqqfiprlinnplekdsk 35 (39) -+|++-|+|-.-+|+|.. T Consensus 20 lr~YlD~ii~~ilE~nPs 37 (42) T 2d7c_C 20 LQDYIDRIIVAIMETNPS 37 (42) T ss_dssp HHHHHHHHHHHHHTTCGG T ss_pred HHHHHHHHHHHHHHCCCC T ss_conf 999999999999940940 No 6 >3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} Probab=4.82 E-value=1.4e+02 Score=12.86 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=8.4 Q ss_pred HHHHHHHHHHCC Q ss_conf 999997997238 Q 537021.9.peg.9 17 ICQQFIPRLINN 28 (39) Q Consensus 17 icqqfiprlinn 28 (39) -||.||..|-.| T Consensus 49 acqefIt~LgRN 60 (101) T 3ogi_A 49 ACQEFITQLGRN 60 (101) T ss_dssp CTHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999998411 No 7 >1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Probab=4.25 E-value=2e+02 Score=12.00 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.6 Q ss_pred HHHHHHHCCHHHHH Q ss_conf 99799723822112 Q 537021.9.peg.9 20 QFIPRLINNPLEKD 33 (39) Q Consensus 20 qfiprlinnplekd 33 (39) .-|-+.+|+|++-. T Consensus 36 ~~ir~Yl~~Pl~YG 49 (51) T 1tc3_C 36 HCIRVYLKDPVSYG 49 (51) T ss_dssp HHHHHHHHCSTTTT T ss_pred HHHHHHHCCHHHCC T ss_conf 99999956923105 No 8 >1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A* Probab=3.83 E-value=2.4e+02 Score=11.59 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=15.4 Q ss_pred CEECCHHHHHHHHHHHHHHHHH Q ss_conf 0102079999999999997997 Q 537021.9.peg.9 4 TIRLPNFLWVFIQICQQFIPRL 25 (39) Q Consensus 4 tirlpnflwvfiqicqqfiprl 25 (39) +...-.||--+|..||..|..+ T Consensus 111 t~tivEFLn~WItfCQsi~St~ 132 (133) T 1m48_A 111 TATIVEFLNRWITFCQSIISTL 132 (133) T ss_dssp CBCHHHHHHHHHHHHHHHHHTC T ss_pred EEHHHHHHHHHHHHHHHHHHHC T ss_conf 1319999999999999999841 No 9 >2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2kj7_A Probab=3.59 E-value=1.6e+02 Score=12.50 Aligned_cols=8 Identities=75% Similarity=1.016 Sum_probs=0.0 Q ss_pred CEECCHHH Q ss_conf 01020799 Q 537021.9.peg.9 4 TIRLPNFL 11 (39) Q Consensus 4 tirlpnfl 11 (39) |-||.||| T Consensus 9 tqrLanFL 16 (37) T 2g48_C 9 TQRLANFL 16 (37) T ss_pred HHHHHHHH T ss_conf 99999998 No 10 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=3.47 E-value=2.6e+02 Score=11.40 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=0.0 Q ss_pred CCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 973010207999999999999799723822112432 Q 537021.9.peg.9 1 MSTTIRLPNFLWVFIQICQQFIPRLINNPLEKDSKF 36 (39) Q Consensus 1 msttirlpnflwvfiqicqqfiprlinnplekdskf 36 (39) |..+-+-| ++.||.++..-...++-+...++. T Consensus 4 m~~~~k~P----~y~qi~~~i~~~I~~g~l~~G~~L 35 (126) T 3by6_A 4 MAITQKRP----VYLQLVDRIKNEVATDVLSANDQL 35 (126) T ss_dssp CCCCCCCC----HHHHHHHHHHHHHHTTSSCTTCEE T ss_pred CCCCCCCC----HHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 86678877----999999999999985999992999 Done!