Query 537021.9.peg.945_1
Match_columns 39
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 03:50:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_945.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ds2_A Sweet protein mabinlin- 9.2 94 0.004 13.8 1.2 11 16-26 16-26 (33)
2 1xc0_A Pardaxin P-4, PA4; BEND 7.2 1.2E+02 0.0051 13.2 1.0 13 21-33 5-17 (33)
3 3n1h_A Stwhy2; single-stranded 6.8 1.5E+02 0.0063 12.7 2.4 23 11-33 146-174 (178)
4 3mhs_E SAGA-associated factor 6.8 50 0.0021 15.3 -1.1 14 24-37 63-76 (96)
5 2d7c_C RAB11 family-interactin 5.2 1.6E+02 0.0066 12.6 0.7 18 18-35 20-37 (42)
6 3ogi_A ESXP, putative ESAT-6-l 4.8 1.4E+02 0.0059 12.9 0.2 12 17-28 49-60 (101)
7 1tc3_C Protein (TC3 transposas 4.2 2E+02 0.0085 12.0 0.7 14 20-33 36-49 (51)
8 1m48_A Interleukin-2; four-hel 3.8 2.4E+02 0.01 11.6 1.8 22 4-25 111-132 (133)
9 2g48_C Islet amyloid polypepti 3.6 1.6E+02 0.0069 12.5 -0.3 8 4-11 9-16 (37)
10 3by6_A Predicted transcription 3.5 2.6E+02 0.011 11.4 2.4 32 1-36 4-35 (126)
No 1
>2ds2_A Sweet protein mabinlin-2 chain A; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=9.18 E-value=94 Score=13.80 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999979972
Q 537021.9.peg.9 16 QICQQFIPRLI 26 (39)
Q Consensus 16 qicqqfiprli 26 (39)
..||.||.|-.
T Consensus 16 racqrfihrra 26 (33)
T 2ds2_A 16 RACQRFIHRRA 26 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=7.18 E-value=1.2e+02 Score=13.21 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=10.5
Q ss_pred HHHHHHCCHHHHH
Q ss_conf 9799723822112
Q 537021.9.peg.9 21 FIPRLINNPLEKD 33 (39)
Q Consensus 21 fiprlinnplekd 33 (39)
.||..|..||-|.
T Consensus 5 lipkiissplfkt 17 (33)
T 1xc0_A 5 LIPKIISSPLFKT 17 (33)
T ss_dssp SHHHHTTTTTHHH
T ss_pred HHHHHHCCHHHHH
T ss_conf 5069873588999
No 3
>3n1h_A Stwhy2; single-stranded DNA binding protein, plant, potato, DNA binding protein; 2.20A {Solanum tuberosum} PDB: 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=6.80 E-value=1.5e+02 Score=12.69 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHH------CCHHHHH
Q ss_conf 9999999999979972------3822112
Q 537021.9.peg.9 11 LWVFIQICQQFIPRLI------NNPLEKD 33 (39)
Q Consensus 11 lwvfiqicqqfiprli------nnplekd 33 (39)
.-||..+|+--+|+|+ |.|||..
T Consensus 146 f~v~~~~~~~~LP~LlGW~~~~~~~~~~~ 174 (178)
T 3n1h_A 146 FAVMRTAFSFALPHIMGWDRFTNRPLEHH 174 (178)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCC-----
T ss_pred HHHHHHHHHHHHHHHHCHHHHHCCCCCCC
T ss_conf 99999999985146518477747964212
No 4
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 3m99_D
Probab=6.79 E-value=50 Score=15.28 Aligned_cols=14 Identities=36% Similarity=0.850 Sum_probs=9.7
Q ss_pred HHHCCHHHHHHHHC
Q ss_conf 97238221124321
Q 537021.9.peg.9 24 RLINNPLEKDSKFQ 37 (39)
Q Consensus 24 rlinnplekdskfq 37 (39)
++|.|||+++..|.
T Consensus 63 ~ii~~pl~~~~~YR 76 (96)
T 3mhs_E 63 QLIEDPLDKPIQYR 76 (96)
T ss_dssp CCCSSTTSSSCCCE
T ss_pred HHHCCCCCCCCCEE
T ss_conf 76607667765420
No 5
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=5.24 E-value=1.6e+02 Score=12.61 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.6
Q ss_pred HHHHHHHHHCCHHHHHHH
Q ss_conf 999979972382211243
Q 537021.9.peg.9 18 CQQFIPRLINNPLEKDSK 35 (39)
Q Consensus 18 cqqfiprlinnplekdsk 35 (39)
-+|++-|+|-.-+|+|..
T Consensus 20 lr~YlD~ii~~ilE~nPs 37 (42)
T 2d7c_C 20 LQDYIDRIIVAIMETNPS 37 (42)
T ss_dssp HHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999940940
No 6
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis}
Probab=4.82 E-value=1.4e+02 Score=12.86 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=8.4
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999997997238
Q 537021.9.peg.9 17 ICQQFIPRLINN 28 (39)
Q Consensus 17 icqqfiprlinn 28 (39)
-||.||..|-.|
T Consensus 49 acqefIt~LgRN 60 (101)
T 3ogi_A 49 ACQEFITQLGRN 60 (101)
T ss_dssp CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999998411
No 7
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=4.25 E-value=2e+02 Score=12.00 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.6
Q ss_pred HHHHHHHCCHHHHH
Q ss_conf 99799723822112
Q 537021.9.peg.9 20 QFIPRLINNPLEKD 33 (39)
Q Consensus 20 qfiprlinnplekd 33 (39)
.-|-+.+|+|++-.
T Consensus 36 ~~ir~Yl~~Pl~YG 49 (51)
T 1tc3_C 36 HCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHHCSTTTT
T ss_pred HHHHHHHCCHHHCC
T ss_conf 99999956923105
No 8
>1m48_A Interleukin-2; four-helix bundle, small molecule complex, cytokine; HET: FRG; 1.95A {Homo sapiens} SCOP: a.26.1.2 PDB: 1m47_A* 1m49_A* 1m4c_A 1pw6_A* 1z92_A 2b5i_A* 1py2_A* 3ink_C 2erj_D 1qvn_A* 1irl_A 1m4b_A* 1m4a_A* 1nbp_A*
Probab=3.83 E-value=2.4e+02 Score=11.59 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=15.4
Q ss_pred CEECCHHHHHHHHHHHHHHHHH
Q ss_conf 0102079999999999997997
Q 537021.9.peg.9 4 TIRLPNFLWVFIQICQQFIPRL 25 (39)
Q Consensus 4 tirlpnflwvfiqicqqfiprl 25 (39)
+...-.||--+|..||..|..+
T Consensus 111 t~tivEFLn~WItfCQsi~St~ 132 (133)
T 1m48_A 111 TATIVEFLNRWITFCQSIISTL 132 (133)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTC
T ss_pred EEHHHHHHHHHHHHHHHHHHHC
T ss_conf 1319999999999999999841
No 9
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2kj7_A
Probab=3.59 E-value=1.6e+02 Score=12.50 Aligned_cols=8 Identities=75% Similarity=1.016 Sum_probs=0.0
Q ss_pred CEECCHHH
Q ss_conf 01020799
Q 537021.9.peg.9 4 TIRLPNFL 11 (39)
Q Consensus 4 tirlpnfl 11 (39)
|-||.|||
T Consensus 9 tqrLanFL 16 (37)
T 2g48_C 9 TQRLANFL 16 (37)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 10
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=3.47 E-value=2.6e+02 Score=11.40 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 973010207999999999999799723822112432
Q 537021.9.peg.9 1 MSTTIRLPNFLWVFIQICQQFIPRLINNPLEKDSKF 36 (39)
Q Consensus 1 msttirlpnflwvfiqicqqfiprlinnplekdskf 36 (39)
|..+-+-| ++.||.++..-...++-+...++.
T Consensus 4 m~~~~k~P----~y~qi~~~i~~~I~~g~l~~G~~L 35 (126)
T 3by6_A 4 MAITQKRP----VYLQLVDRIKNEVATDVLSANDQL 35 (126)
T ss_dssp CCCCCCCC----HHHHHHHHHHHHHHTTSSCTTCEE
T ss_pred CCCCCCCC----HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86678877----999999999999985999992999
Done!