Query 537021.9.peg.950_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 05:57:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_950.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xu1_R Tumor necrosis factor r 11.6 43 0.0018 15.5 0.2 12 2-13 11-22 (42) 2 2l3b_A Conserved protein found 8.6 1.2E+02 0.0052 13.2 1.8 21 1-21 83-103 (130) 3 2wnm_A Gene 2, GP2; small prot 6.8 1.5E+02 0.0064 12.7 2.7 23 4-26 7-29 (64) 4 3kyh_C MRNA-capping enzyme sub 5.3 1.9E+02 0.0079 12.3 3.7 31 2-32 67-102 (461) 5 3dy0_B C-terminus plasma serin 5.2 1.9E+02 0.008 12.3 2.5 16 10-25 8-23 (29) 6 2fmc_A Hydrophobin; beta barre 4.8 1.9E+02 0.0081 12.2 0.9 10 15-24 72-81 (82) 7 1kca_A Repressor protein CI; g 3.1 2.2E+02 0.0092 12.0 -0.0 16 7-22 8-23 (109) 8 1yo3_A Dynein light chain 1; s 2.9 3.1E+02 0.013 11.2 3.4 24 16-39 78-101 (102) 9 2jox_A Churchill protein; zinc 2.8 1.1E+02 0.0045 13.5 -1.8 15 9-23 18-32 (106) 10 2rft_A Influenza B hemagglutin 2.8 1.4E+02 0.0058 13.0 -1.4 19 17-35 66-84 (344) No 1 >1xu1_R Tumor necrosis factor receptor superfamily member 13B; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, hormone/growth factor receptor complex; 1.90A {Homo sapiens} SCOP: g.24.1.2 PDB: 1xut_A Probab=11.61 E-value=43 Score=15.54 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.0 Q ss_pred CCCCCCCCCEEE Q ss_conf 521112367267 Q 537021.9.peg.9 2 YYDSLQKDNVSF 13 (40) Q Consensus 2 yydslqkdnvsf 13 (40) |||.|-+|-+|- T Consensus 11 YYD~Llr~CisC 22 (42) T 1xu1_R 11 FYDHLLRDCISC 22 (42) T ss_dssp EEETTTTEEEEG T ss_pred HHHHHHHHHHHH T ss_conf 589999998868 No 2 >2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-2; NMR {Bacteroides thetaiotaomicron} Probab=8.59 E-value=1.2e+02 Score=13.21 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.9 Q ss_pred CCCCCCCCCCEEEEEEEECCC Q ss_conf 952111236726777884187 Q 537021.9.peg.9 1 LYYDSLQKDNVSFLLHIIGNS 21 (40) Q Consensus 1 lyydslqkdnvsfllhiigns 21 (40) |||.|.-.++-++-.-+..|. T Consensus 83 LYYtS~s~~~q~idv~v~Dnf 103 (130) T 2l3b_A 83 LYYTSASTDQQTVDVYFQDSF 103 (130) T ss_dssp EEEECCCSSCEEEEEEEECTT T ss_pred EEEECCCCCCCEEEEEEECCC T ss_conf 999538877750799999388 No 3 >2wnm_A Gene 2, GP2; small protein inhibntor bacterial RNA polymerase, hydrolase; NMR {Enterobacteria phage T7} Probab=6.78 E-value=1.5e+02 Score=12.75 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.9 Q ss_pred CCCCCCCEEEEEEEECCCEEEEE Q ss_conf 11123672677788418759999 Q 537021.9.peg.9 4 DSLQKDNVSFLLHIIGNSQCFLM 26 (40) Q Consensus 4 dslqkdnvsfllhiignsqcflm 26 (40) .|+..++-.|+.++-|+++.|-. T Consensus 7 g~l~~~~kKf~~tvE~~~~sfEv 29 (64) T 2wnm_A 7 GSLSVDNKKFWATVESSEHSFEV 29 (64) T ss_dssp CCCCSSSCEEEEEEECSSCEEEE T ss_pred CCCCCCCCEEEEEEECCCCEEEE T ss_conf 52123561699999135713898 No 4 >3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae} Probab=5.35 E-value=1.9e+02 Score=12.30 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=22.3 Q ss_pred CCCCCCCCCEEEEEEEE-----CCCEEEEEEECCCE Q ss_conf 52111236726777884-----18759999942761 Q 537021.9.peg.9 2 YYDSLQKDNVSFLLHII-----GNSQCFLMFEKDDI 32 (40) Q Consensus 2 yydslqkdnvsfllhii-----gnsqcflmfekddi 32 (40) ||-+..-|.+-+||+|. |...|||.=.+-++ T Consensus 67 Y~V~eK~DG~R~ll~i~~~~~~~~~~~ylidR~~~~ 102 (461) T 3kyh_C 67 YYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNY 102 (461) T ss_dssp EEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCE T ss_pred EEEEECCCCEEEEEEEEECCCCCCCEEEEEECCCCE T ss_conf 899988277389999974244897169999789844 No 5 >3dy0_B C-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_B* Probab=5.24 E-value=1.9e+02 Score=12.26 Aligned_cols=16 Identities=44% Similarity=0.737 Sum_probs=8.2 Q ss_pred CEEEEEEEECCCEEEE Q ss_conf 7267778841875999 Q 537021.9.peg.9 10 NVSFLLHIIGNSQCFL 25 (40) Q Consensus 10 nvsfllhiignsqcfl 25 (40) |-.||..|..|.--|+ T Consensus 8 nrpflmfiv~nnilfl 23 (29) T 3dy0_B 8 NRPFLMFIVDNNILFL 23 (29) T ss_dssp CSCEEEEEESSSEEEE T ss_pred CCCEEEEEEECCEEEE T ss_conf 6845999995768999 No 6 >2fmc_A Hydrophobin; beta barrel, flexible loop, disulphide bonds, surface active protein; NMR {Neurospora crassa} PDB: 2k6a_A Probab=4.84 E-value=1.9e+02 Score=12.24 Aligned_cols=10 Identities=30% Similarity=0.720 Sum_probs=7.1 Q ss_pred EEEECCCEEE Q ss_conf 7884187599 Q 537021.9.peg.9 15 LHIIGNSQCF 24 (40) Q Consensus 15 lhiignsqcf 24 (40) |-||||.||. T Consensus 72 li~i~~~~c~ 81 (82) T 2fmc_A 72 FLIINAANCV 81 (82) T ss_dssp SCEECCSEEE T ss_pred EEEECCEEEC T ss_conf 8997220032 No 7 >1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1 Probab=3.06 E-value=2.2e+02 Score=11.96 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=9.3 Q ss_pred CCCCEEEEEEEECCCE Q ss_conf 2367267778841875 Q 537021.9.peg.9 7 QKDNVSFLLHIIGNSQ 22 (40) Q Consensus 7 qkdnvsfllhiignsq 22 (40) ...+-.|.|.+-|+|- T Consensus 8 ~~~~~~F~l~V~GdSM 23 (109) T 1kca_A 8 KASDSAFWLEVEGNSM 23 (109) T ss_dssp -CCSSCEEEECCSSTT T ss_pred CCCCCEEEEEEECCCC T ss_conf 2799999999978667 No 8 >1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A Probab=2.87 E-value=3.1e+02 Score=11.17 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=17.5 Q ss_pred EEECCCEEEEEEECCCEEEEEEEE Q ss_conf 884187599999427615999996 Q 537021.9.peg.9 16 HIIGNSQCFLMFEKDDISIIKFRI 39 (40) Q Consensus 16 hiignsqcflmfekddisiikfri 39 (40) .+.-...+|+-|--++++++-||- T Consensus 78 ~vthe~~~~i~F~~g~~~iLlfKt 101 (102) T 1yo3_A 78 YVTHETKNFIYFYIGQVAILLFKS 101 (102) T ss_dssp EEESCCCEEEEEEETTEEEEEEEC T ss_pred EEEECCCCEEEEEECCEEEEEEEC T ss_conf 999659939999959999999952 No 9 >2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens} Probab=2.82 E-value=1.1e+02 Score=13.52 Aligned_cols=15 Identities=47% Similarity=0.842 Sum_probs=0.0 Q ss_pred CCEEEEEEEECCCEE Q ss_conf 672677788418759 Q 537021.9.peg.9 9 DNVSFLLHIIGNSQC 23 (40) Q Consensus 9 dnvsfllhiignsqc 23 (40) +|-||||...|-++| T Consensus 18 e~GSyllNf~gCa~C 32 (106) T 2jox_A 18 ENGSFLLNFTGCAVC 32 (106) T ss_dssp SSCCCTTTBCCCSSS T ss_pred CCCCEEEECHHHHHC T ss_conf 387079971202221 No 10 >2rft_A Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope protein, fusion protein, membrane, transmembrane, virion; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A* Probab=2.76 E-value=1.4e+02 Score=12.99 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=0.0 Q ss_pred EECCCEEEEEEECCCEEEE Q ss_conf 8418759999942761599 Q 537021.9.peg.9 17 IIGNSQCFLMFEKDDISII 35 (40) Q Consensus 17 iignsqcflmfekddisii 35 (40) |+||.+|-+.|....-|+| T Consensus 66 ilGnP~Cd~~l~~~~Ws~i 84 (344) T 2rft_A 66 ALGRPKCMGTIPSAKASIL 84 (344) T ss_dssp HHTCSSCCCCCCCCSEEEE T ss_pred EECCCCHHHHCCCCCEEEE T ss_conf 6048405300688715799 Done!