Query         537021.9.peg.950_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 05:57:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_950.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1xu1_R Tumor necrosis factor r  11.6      43  0.0018   15.5   0.2   12    2-13     11-22  (42)
  2 2l3b_A Conserved protein found   8.6 1.2E+02  0.0052   13.2   1.8   21    1-21     83-103 (130)
  3 2wnm_A Gene 2, GP2; small prot   6.8 1.5E+02  0.0064   12.7   2.7   23    4-26      7-29  (64)
  4 3kyh_C MRNA-capping enzyme sub   5.3 1.9E+02  0.0079   12.3   3.7   31    2-32     67-102 (461)
  5 3dy0_B C-terminus plasma serin   5.2 1.9E+02   0.008   12.3   2.5   16   10-25      8-23  (29)
  6 2fmc_A Hydrophobin; beta barre   4.8 1.9E+02  0.0081   12.2   0.9   10   15-24     72-81  (82)
  7 1kca_A Repressor protein CI; g   3.1 2.2E+02  0.0092   12.0  -0.0   16    7-22      8-23  (109)
  8 1yo3_A Dynein light chain 1; s   2.9 3.1E+02   0.013   11.2   3.4   24   16-39     78-101 (102)
  9 2jox_A Churchill protein; zinc   2.8 1.1E+02  0.0045   13.5  -1.8   15    9-23     18-32  (106)
 10 2rft_A Influenza B hemagglutin   2.8 1.4E+02  0.0058   13.0  -1.4   19   17-35     66-84  (344)

No 1  
>1xu1_R Tumor necrosis factor receptor superfamily member 13B; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, hormone/growth factor receptor complex; 1.90A {Homo sapiens} SCOP: g.24.1.2 PDB: 1xut_A
Probab=11.61  E-value=43  Score=15.54  Aligned_cols=12  Identities=42%  Similarity=0.830  Sum_probs=10.0

Q ss_pred             CCCCCCCCCEEE
Q ss_conf             521112367267
Q 537021.9.peg.9    2 YYDSLQKDNVSF   13 (40)
Q Consensus         2 yydslqkdnvsf   13 (40)
                      |||.|-+|-+|-
T Consensus        11 YYD~Llr~CisC   22 (42)
T 1xu1_R           11 FYDHLLRDCISC   22 (42)
T ss_dssp             EEETTTTEEEEG
T ss_pred             HHHHHHHHHHHH
T ss_conf             589999998868


No 2  
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-2; NMR {Bacteroides thetaiotaomicron}
Probab=8.59  E-value=1.2e+02  Score=13.21  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=16.9

Q ss_pred             CCCCCCCCCCEEEEEEEECCC
Q ss_conf             952111236726777884187
Q 537021.9.peg.9    1 LYYDSLQKDNVSFLLHIIGNS   21 (40)
Q Consensus         1 lyydslqkdnvsfllhiigns   21 (40)
                      |||.|.-.++-++-.-+..|.
T Consensus        83 LYYtS~s~~~q~idv~v~Dnf  103 (130)
T 2l3b_A           83 LYYTSASTDQQTVDVYFQDSF  103 (130)
T ss_dssp             EEEECCCSSCEEEEEEEECTT
T ss_pred             EEEECCCCCCCEEEEEEECCC
T ss_conf             999538877750799999388


No 3  
>2wnm_A Gene 2, GP2; small protein inhibntor bacterial RNA polymerase, hydrolase; NMR {Enterobacteria phage T7}
Probab=6.78  E-value=1.5e+02  Score=12.75  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             CCCCCCCEEEEEEEECCCEEEEE
Q ss_conf             11123672677788418759999
Q 537021.9.peg.9    4 DSLQKDNVSFLLHIIGNSQCFLM   26 (40)
Q Consensus         4 dslqkdnvsfllhiignsqcflm   26 (40)
                      .|+..++-.|+.++-|+++.|-.
T Consensus         7 g~l~~~~kKf~~tvE~~~~sfEv   29 (64)
T 2wnm_A            7 GSLSVDNKKFWATVESSEHSFEV   29 (64)
T ss_dssp             CCCCSSSCEEEEEEECSSCEEEE
T ss_pred             CCCCCCCCEEEEEEECCCCEEEE
T ss_conf             52123561699999135713898


No 4  
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=5.35  E-value=1.9e+02  Score=12.30  Aligned_cols=31  Identities=26%  Similarity=0.683  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEEEEEEEE-----CCCEEEEEEECCCE
Q ss_conf             52111236726777884-----18759999942761
Q 537021.9.peg.9    2 YYDSLQKDNVSFLLHII-----GNSQCFLMFEKDDI   32 (40)
Q Consensus         2 yydslqkdnvsfllhii-----gnsqcflmfekddi   32 (40)
                      ||-+..-|.+-+||+|.     |...|||.=.+-++
T Consensus        67 Y~V~eK~DG~R~ll~i~~~~~~~~~~~ylidR~~~~  102 (461)
T 3kyh_C           67 YYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENNY  102 (461)
T ss_dssp             EEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSCE
T ss_pred             EEEEECCCCEEEEEEEEECCCCCCCEEEEEECCCCE
T ss_conf             899988277389999974244897169999789844


No 5  
>3dy0_B C-terminus plasma serine protease inhibitor; serpin, blood clotting, hydrolase inhibitor; HET: IDS SGN; 1.55A {Homo sapiens} PDB: 1lq8_B*
Probab=5.24  E-value=1.9e+02  Score=12.26  Aligned_cols=16  Identities=44%  Similarity=0.737  Sum_probs=8.2

Q ss_pred             CEEEEEEEECCCEEEE
Q ss_conf             7267778841875999
Q 537021.9.peg.9   10 NVSFLLHIIGNSQCFL   25 (40)
Q Consensus        10 nvsfllhiignsqcfl   25 (40)
                      |-.||..|..|.--|+
T Consensus         8 nrpflmfiv~nnilfl   23 (29)
T 3dy0_B            8 NRPFLMFIVDNNILFL   23 (29)
T ss_dssp             CSCEEEEEESSSEEEE
T ss_pred             CCCEEEEEEECCEEEE
T ss_conf             6845999995768999


No 6  
>2fmc_A Hydrophobin; beta barrel, flexible loop, disulphide bonds, surface active protein; NMR {Neurospora crassa} PDB: 2k6a_A
Probab=4.84  E-value=1.9e+02  Score=12.24  Aligned_cols=10  Identities=30%  Similarity=0.720  Sum_probs=7.1

Q ss_pred             EEEECCCEEE
Q ss_conf             7884187599
Q 537021.9.peg.9   15 LHIIGNSQCF   24 (40)
Q Consensus        15 lhiignsqcf   24 (40)
                      |-||||.||.
T Consensus        72 li~i~~~~c~   81 (82)
T 2fmc_A           72 FLIINAANCV   81 (82)
T ss_dssp             SCEECCSEEE
T ss_pred             EEEECCEEEC
T ss_conf             8997220032


No 7  
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=3.06  E-value=2.2e+02  Score=11.96  Aligned_cols=16  Identities=31%  Similarity=0.555  Sum_probs=9.3

Q ss_pred             CCCCEEEEEEEECCCE
Q ss_conf             2367267778841875
Q 537021.9.peg.9    7 QKDNVSFLLHIIGNSQ   22 (40)
Q Consensus         7 qkdnvsfllhiignsq   22 (40)
                      ...+-.|.|.+-|+|-
T Consensus         8 ~~~~~~F~l~V~GdSM   23 (109)
T 1kca_A            8 KASDSAFWLEVEGNSM   23 (109)
T ss_dssp             -CCSSCEEEECCSSTT
T ss_pred             CCCCCEEEEEEECCCC
T ss_conf             2799999999978667


No 8  
>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A
Probab=2.87  E-value=3.1e+02  Score=11.17  Aligned_cols=24  Identities=17%  Similarity=0.426  Sum_probs=17.5

Q ss_pred             EEECCCEEEEEEECCCEEEEEEEE
Q ss_conf             884187599999427615999996
Q 537021.9.peg.9   16 HIIGNSQCFLMFEKDDISIIKFRI   39 (40)
Q Consensus        16 hiignsqcflmfekddisiikfri   39 (40)
                      .+.-...+|+-|--++++++-||-
T Consensus        78 ~vthe~~~~i~F~~g~~~iLlfKt  101 (102)
T 1yo3_A           78 YVTHETKNFIYFYIGQVAILLFKS  101 (102)
T ss_dssp             EEESCCCEEEEEEETTEEEEEEEC
T ss_pred             EEEECCCCEEEEEECCEEEEEEEC
T ss_conf             999659939999959999999952


No 9  
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=2.82  E-value=1.1e+02  Score=13.52  Aligned_cols=15  Identities=47%  Similarity=0.842  Sum_probs=0.0

Q ss_pred             CCEEEEEEEECCCEE
Q ss_conf             672677788418759
Q 537021.9.peg.9    9 DNVSFLLHIIGNSQC   23 (40)
Q Consensus         9 dnvsfllhiignsqc   23 (40)
                      +|-||||...|-++|
T Consensus        18 e~GSyllNf~gCa~C   32 (106)
T 2jox_A           18 ENGSFLLNFTGCAVC   32 (106)
T ss_dssp             SSCCCTTTBCCCSSS
T ss_pred             CCCCEEEECHHHHHC
T ss_conf             387079971202221


No 10 
>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope protein, fusion protein, membrane, transmembrane, virion; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A*
Probab=2.76  E-value=1.4e+02  Score=12.99  Aligned_cols=19  Identities=21%  Similarity=0.490  Sum_probs=0.0

Q ss_pred             EECCCEEEEEEECCCEEEE
Q ss_conf             8418759999942761599
Q 537021.9.peg.9   17 IIGNSQCFLMFEKDDISII   35 (40)
Q Consensus        17 iignsqcflmfekddisii   35 (40)
                      |+||.+|-+.|....-|+|
T Consensus        66 ilGnP~Cd~~l~~~~Ws~i   84 (344)
T 2rft_A           66 ALGRPKCMGTIPSAKASIL   84 (344)
T ss_dssp             HHTCSSCCCCCCCCSEEEE
T ss_pred             EECCCCHHHHCCCCCEEEE
T ss_conf             6048405300688715799


Done!