Query 537021.9.peg.950_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 06:17:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_950.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1t61c2 d.169.1.6 (C:115-225) 10.4 53 0.0039 13.9 1.5 14 9-22 22-35 (111) 2 d1xu1r_ g.24.1.2 (R:) Tumor ne 9.8 31 0.0023 15.0 0.2 12 2-13 11-22 (38) 3 d1t61a2 d.169.1.6 (A:115-225) 7.2 78 0.0057 13.0 1.3 14 9-22 25-38 (111) 4 d1js8a2 b.112.1.1 (A:2792-2892 4.6 88 0.0064 12.8 0.3 14 11-24 6-19 (101) 5 d1lnla2 b.112.1.1 (A:305-405) 4.3 94 0.0068 12.6 0.2 15 11-25 6-20 (101) 6 d1jhfa2 b.87.1.1 (A:73-198) Le 3.5 81 0.0059 12.9 -0.6 31 6-36 32-62 (126) 7 d1j0sa_ b.42.1.2 (A:) Interleu 2.7 1.9E+02 0.014 11.0 0.7 26 7-32 96-132 (157) 8 d1r89a3 d.58.16.2 (A:258-437) 2.5 2E+02 0.014 11.0 1.1 18 19-36 66-83 (180) 9 d3e2ba1 d.39.1.1 (A:3-89) Dyne 2.3 2.2E+02 0.016 10.8 3.5 20 20-39 67-86 (87) 10 d1ctda_ a.39.1.5 (A:) Troponin 2.2 29 0.0021 15.2 -4.2 10 21-30 7-16 (34) No 1 >d1t61c2 d.169.1.6 (C:115-225) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]} Probab=10.41 E-value=53 Score=13.88 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=9.8 Q ss_pred CCEEEEEEEECCCE Q ss_conf 67267778841875 Q 537021.9.peg.9 9 DNVSFLLHIIGNSQ 22 (40) Q Consensus 9 dnvsfllhiignsq 22 (40) +..|||+|.-||.+ T Consensus 22 ~GYSflm~t~~~~~ 35 (111) T d1t61c2 22 IGYSFLMHTAAGDE 35 (111) T ss_dssp EEEEEEEEECSTTC T ss_pred CEECEEEEECCCCC T ss_conf 30340345035776 No 2 >d1xu1r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 13B, TACI {Human (Homo sapiens) [TaxId: 9606]} Probab=9.83 E-value=31 Score=15.03 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=9.6 Q ss_pred CCCCCCCCCEEE Q ss_conf 521112367267 Q 537021.9.peg.9 2 YYDSLQKDNVSF 13 (40) Q Consensus 2 yydslqkdnvsf 13 (40) |||.|-+|-||- T Consensus 11 YYD~Ll~~CisC 22 (38) T d1xu1r_ 11 FYDHLLRDCISC 22 (38) T ss_dssp EEETTTTEEEEG T ss_pred HHHHHHHHHHHH T ss_conf 899999998828 No 3 >d1t61a2 d.169.1.6 (A:115-225) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]} Probab=7.22 E-value=78 Score=13.03 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=9.6 Q ss_pred CCEEEEEEEECCCE Q ss_conf 67267778841875 Q 537021.9.peg.9 9 DNVSFLLHIIGNSQ 22 (40) Q Consensus 9 dnvsfllhiignsq 22 (40) +..|||+|.-+|++ T Consensus 25 ~GYSflm~t~~~~~ 38 (111) T d1t61a2 25 IGYSFVMHTSAGAE 38 (111) T ss_dssp EEEEEEEEECGGGC T ss_pred CCCCEEEECCCCCC T ss_conf 30330345036875 No 4 >d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]} Probab=4.65 E-value=88 Score=12.76 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=10.5 Q ss_pred EEEEEEEECCCEEE Q ss_conf 26777884187599 Q 537021.9.peg.9 11 VSFLLHIIGNSQCF 24 (40) Q Consensus 11 vsfllhiignsqcf 24 (40) .+||||=||.|.-. T Consensus 6 AgFlL~Gig~SA~V 19 (101) T d1js8a2 6 AGFLLRTIGQSADV 19 (101) T ss_dssp EEECCBCCSSCEEE T ss_pred EEEEECCCCCEEEE T ss_conf 87511168850688 No 5 >d1lnla2 b.112.1.1 (A:305-405) C-terminal domain of mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]} Probab=4.26 E-value=94 Score=12.62 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=10.8 Q ss_pred EEEEEEEECCCEEEE Q ss_conf 267778841875999 Q 537021.9.peg.9 11 VSFLLHIIGNSQCFL 25 (40) Q Consensus 11 vsfllhiignsqcfl 25 (40) .+||||=||.|.-.- T Consensus 6 AgFlL~Gig~SA~V~ 20 (101) T d1lnla2 6 AGFLLEGIGTSAHLD 20 (101) T ss_dssp EEECCCCCSSCEEEE T ss_pred EEEEECCCCCEEEEE T ss_conf 663001688516889 No 6 >d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]} Probab=3.53 E-value=81 Score=12.93 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=16.7 Q ss_pred CCCCCEEEEEEEECCCEEEEEEECCCEEEEE Q ss_conf 1236726777884187599999427615999 Q 537021.9.peg.9 6 LQKDNVSFLLHIIGNSQCFLMFEKDDISIIK 36 (40) Q Consensus 6 lqkdnvsfllhiignsqcflmfekddisiik 36 (40) +.+.+-.|++.+-|+|-.-..+..+|+-++. T Consensus 32 ~~~~~~~f~lrV~GdSM~~~~i~~gd~viv~ 62 (126) T d1jhfa2 32 LFKPNADFLLRVSGMSMKDIGIMDGDLLAVH 62 (126) T ss_dssp GSSSCCCEEEECCSSTTGGGTCCTTCEEEEE T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCEEEEEE T ss_conf 9388866999994876667414799799971 No 7 >d1j0sa_ b.42.1.2 (A:) Interleukin-18 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.65 E-value=1.9e+02 Score=11.03 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=15.9 Q ss_pred CCCCEEEEEEEECCC-----------EEEEEEECCCE Q ss_conf 236726777884187-----------59999942761 Q 537021.9.peg.9 7 QKDNVSFLLHIIGNS-----------QCFLMFEKDDI 32 (40) Q Consensus 7 qkdnvsfllhiigns-----------qcflmfekddi 32 (40) +.|-+-|.-.|-|.+ .+||-||+++- T Consensus 96 ~sdiIFFqk~v~g~~~k~~FEsSLy~g~FLAcEke~~ 132 (157) T d1j0sa_ 96 KSDIIFFQRSVPGHDNKMQFESSSYEGYFLACEKERD 132 (157) T ss_dssp SCSSCEEEEECTTSSSEEEEEESSCSSCEEEEEEETT T ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCC T ss_conf 2215999830589764178630246525799865226 No 8 >d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=2.55 E-value=2e+02 Score=10.96 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=12.2 Q ss_pred CCCEEEEEEECCCEEEEE Q ss_conf 187599999427615999 Q 537021.9.peg.9 19 GNSQCFLMFEKDDISIIK 36 (40) Q Consensus 19 gnsqcflmfekddisiik 36 (40) +...|++|||-+..++-. T Consensus 66 de~~~~ll~El~~~~lp~ 83 (180) T d1r89a3 66 SEEFCYLLFECQIKEISR 83 (180) T ss_dssp CSSEEEEEEEESCSCCCS T ss_pred CCCEEEEEEEEEECCCCC T ss_conf 698799999974054567 No 9 >d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=2.29 E-value=2.2e+02 Score=10.77 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=14.3 Q ss_pred CCEEEEEEECCCEEEEEEEE Q ss_conf 87599999427615999996 Q 537021.9.peg.9 20 NSQCFLMFEKDDISIIKFRI 39 (40) Q Consensus 20 nsqcflmfekddisiikfri 39 (40) ...+|+-|-.++++++-||- T Consensus 67 e~~~~i~F~~g~~~~Ll~Kt 86 (87) T d3e2ba1 67 ETRHFIYFYLGQVAILLFKS 86 (87) T ss_dssp ETTEEEEEEETTEEEEEEEC T ss_pred CCCCEEEEEECCEEEEEEEC T ss_conf 49949999979999999953 No 10 >d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Probab=2.19 E-value=29 Score=15.20 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=0.0 Q ss_pred CEEEEEEECC Q ss_conf 7599999427 Q 537021.9.peg.9 21 SQCFLMFEKD 30 (40) Q Consensus 21 sqcflmfekd 30 (40) +.||-||.|. T Consensus 7 ae~FRifDkN 16 (34) T d1ctda_ 7 ANAFRIFDKN 16 (34) T ss_dssp HHHHHTTCCS T ss_pred HHHHHHHCCC T ss_conf 9999998147 Done!