Query 537021.9.peg.961_1
Match_columns 32
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Wed May 25 06:00:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_961.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam05445 Pox_ser-thr_kin Poxv 13.5 1E+02 0.0027 15.2 1.5 19 12-32 416-434 (434)
2 cd01492 Aos1_SUMO Ubiquitin ac 12.5 1.1E+02 0.0028 15.1 1.3 20 7-26 117-136 (197)
3 pfam00899 ThiF ThiF family. Th 10.1 1.4E+02 0.0036 14.5 1.2 18 9-26 100-117 (134)
4 pfam12342 DUF3640 Protein of u 9.0 1.3E+02 0.0034 14.7 0.8 13 14-26 2-14 (26)
5 pfam08434 CLCA_N Calcium-activ 8.5 1.6E+02 0.004 14.3 1.0 27 2-28 48-74 (262)
6 TIGR02297 HpaA 4-hydroxyphenyl 8.0 1.4E+02 0.0035 14.6 0.5 12 13-24 220-231 (292)
7 PRK10244 hypothetical protein; 8.0 2.4E+02 0.0061 13.4 1.7 22 2-23 8-29 (86)
8 TIGR02360 pbenz_hydroxyl 4-hyd 6.5 2.5E+02 0.0063 13.3 1.2 15 12-26 12-26 (393)
9 pfam05358 DicB DicB protein. D 6.5 2.3E+02 0.0057 13.5 1.0 21 1-21 25-45 (62)
10 pfam10796 Anti-adapt_IraP Sigm 6.5 2.9E+02 0.0073 13.0 1.7 19 2-20 8-26 (87)
No 1
>pfam05445 Pox_ser-thr_kin Poxvirus serine/threonine protein kinase.
Probab=13.53 E-value=1e+02 Score=15.16 Aligned_cols=19 Identities=42% Similarity=0.760 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCCHHHHHCC
Q ss_conf 267999997302222355319
Q 537021.9.peg.9 12 ESSLLLNQVCRKNTIFSTWIS 32 (32)
Q Consensus 12 esslllnqvcrkntifstwis 32 (32)
..|.|-|-|-|. +||.||.
T Consensus 416 ~Isfl~~fv~~d--lFs~WIn 434 (434)
T pfam05445 416 PISFLENFIMRD--LFSNWIN 434 (434)
T ss_pred CHHHHHHHHHHH--HHHHHCC
T ss_conf 679999999888--7786439
No 2
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=12.53 E-value=1.1e+02 Score=15.08 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.1
Q ss_pred HCCCCHHHHHHHHHHCCCCH
Q ss_conf 23672267999997302222
Q 537021.9.peg.9 7 ANMNTESSLLLNQVCRKNTI 26 (32)
Q Consensus 7 anmntesslllnqvcrknti 26 (32)
+..|-++..++|+.|+++-+
T Consensus 117 ~~dn~~~r~~iN~~c~~~~i 136 (197)
T cd01492 117 TELSRAELVKINELCRKLGV 136 (197)
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999999999998199
No 3
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=10.05 E-value=1.4e+02 Score=14.54 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHCCCCH
Q ss_conf 672267999997302222
Q 537021.9.peg.9 9 MNTESSLLLNQVCRKNTI 26 (32)
Q Consensus 9 mntesslllnqvcrknti 26 (32)
-|.++.+++|+.|+++-+
T Consensus 100 Dn~~~r~~ln~~c~~~~i 117 (134)
T pfam00899 100 DNFAARYLLNDACVKRGI 117 (134)
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 999999999999998599
No 4
>pfam12342 DUF3640 Protein of unknown function (DUF3640). This family of proteins is found in viruses. Proteins in this family are typically between 25 and 211 amino acids in length.
Probab=9.03 E-value=1.3e+02 Score=14.65 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCCH
Q ss_conf 7999997302222
Q 537021.9.peg.9 14 SLLLNQVCRKNTI 26 (32)
Q Consensus 14 slllnqvcrknti 26 (32)
|||.|..||.-.+
T Consensus 2 slL~nr~crrvdk 14 (26)
T pfam12342 2 SLLTNRMCRRVDK 14 (26)
T ss_pred HHHHHHHHHHHHH
T ss_conf 0567789976236
No 5
>pfam08434 CLCA_N Calcium-activated chloride channel. The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors. The domain described here is found at the N-terminus of CLCAs.
Probab=8.47 E-value=1.6e+02 Score=14.27 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=22.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 357652367226799999730222235
Q 537021.9.peg.9 2 LIEKIANMNTESSLLLNQVCRKNTIFS 28 (32)
Q Consensus 2 liekianmntesslllnqvcrkntifs 28 (32)
||++|-.|-||.|-.|-..-++..-|.
T Consensus 48 li~~ik~m~T~AS~~Lf~AT~~R~yfk 74 (262)
T pfam08434 48 LIQNIKEMVTEASTYLFEATEKRFYFR 74 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 999999999998999999874716510
No 6
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA; InterPro: IPR011983 This putative transcriptional regulator, which contains both the substrate-binding, dimerisation domain and the helix-turn-helix DNA-binding domain of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway ..
Probab=8.00 E-value=1.4e+02 Score=14.59 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCC
Q ss_conf 679999973022
Q 537021.9.peg.9 13 SSLLLNQVCRKN 24 (32)
Q Consensus 13 sslllnqvcrkn 24 (32)
|.--||.+|||=
T Consensus 220 sesrLn~iCr~~ 231 (292)
T TIGR02297 220 SESRLNDICRRI 231 (292)
T ss_pred HHHHHHHHHHHH
T ss_conf 077898999998
No 7
>PRK10244 hypothetical protein; Provisional
Probab=7.96 E-value=2.4e+02 Score=13.41 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=15.9
Q ss_pred HHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 3576523672267999997302
Q 537021.9.peg.9 2 LIEKIANMNTESSLLLNQVCRK 23 (32)
Q Consensus 2 liekianmntesslllnqvcrk 23 (32)
++-|+|.|..|+.-|--||---
T Consensus 8 lL~KlA~ke~eaKeL~AQVEAl 29 (86)
T PRK10244 8 LLAKLAQKEEESKELTAQVEAL 29 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997305889999999999
No 8
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=6.48 E-value=2.5e+02 Score=13.33 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=11.8
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 267999997302222
Q 537021.9.peg.9 12 ESSLLLNQVCRKNTI 26 (32)
Q Consensus 12 esslllnqvcrknti 26 (32)
-|.|||.|.|++.-|
T Consensus 12 PsGLLLGQLLh~~GI 26 (393)
T TIGR02360 12 PSGLLLGQLLHKAGI 26 (393)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 357899999986698
No 9
>pfam05358 DicB DicB protein. DicB is part of the dic operon, which resides on cryptic prophage Kim. Under normal conditions, expression of dicB is actively repressed. When expression is induced, however, cell division rapidly ceases, and this division block is dependent on MinC with which it interacts.
Probab=6.47 E-value=2.3e+02 Score=13.52 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=0.0
Q ss_pred CHHHHHHCCCCHHHHHHHHHH
Q ss_conf 935765236722679999973
Q 537021.9.peg.9 1 VLIEKIANMNTESSLLLNQVC 21 (32)
Q Consensus 1 vliekianmntesslllnqvc 21 (32)
+.+|.--||..-..-|||.+|
T Consensus 25 ~FtEdAIn~RK~E~~LLN~~c 45 (62)
T pfam05358 25 TFTEDAINQRKLEQDLLNEVC 45 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 112999988771198876636
No 10
>pfam10796 Anti-adapt_IraP Sigma-S stabilisation anti-adaptor protein. This family is conserved in Enterobacteriaceae. It is one of a series of proteins, expressed by these bacteria in response to stress, that help to regulate Sigma-S, the stationary phase sigma factor of Escherichia coli and Salmonella. IraP is essential for Sigma-S stabilisation in some but not all starvation conditions.
Probab=6.47 E-value=2.9e+02 Score=13.02 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 3576523672267999997
Q 537021.9.peg.9 2 LIEKIANMNTESSLLLNQV 20 (32)
Q Consensus 2 liekianmntesslllnqv 20 (32)
++-|+|.|..||--|--||
T Consensus 8 lL~KlA~ke~esKeL~AQV 26 (87)
T pfam10796 8 LLAKLAKKEEEAKELTAQV 26 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999997307899999999
Done!