Query 537021.9.peg.961_1 Match_columns 32 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 05:45:14 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_961.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2faf_A Phosphoenolpyruvate car 5.5 1.5E+02 0.0062 13.4 0.7 22 8-29 324-345 (608) 2 1sse_A AP-1 like transcription 4.2 1.9E+02 0.0078 12.9 0.5 10 14-23 25-34 (35) 3 2wsc_I Photosystem I reaction 3.1 2.2E+02 0.0094 12.5 0.1 10 21-30 28-37 (40) 4 3bsu_A Ribonuclease H1, RNAse 2.8 2.1E+02 0.0088 12.6 -0.4 10 22-31 12-21 (53) 5 1qhk_A RNAse HI, protein (ribo 2.7 2E+02 0.0084 12.7 -0.5 10 22-31 10-19 (47) 6 2dwf_A Pulmonary surfactant-as 2.7 1E+02 0.0043 14.1 -2.1 21 2-22 7-28 (34) 7 3h8v_A Ubiquitin-like modifier 2.1 4.5E+02 0.019 11.0 1.1 20 7-26 144-163 (292) 8 2d11_E Na(+)/H(+) exchange reg 1.8 3.7E+02 0.015 11.4 -0.3 9 22-30 20-28 (28) 9 2isa_A Catalase; peroxidase, h 1.8 4.5E+02 0.019 10.9 0.2 11 2-12 35-45 (483) 10 3a69_A Flagellar HOOK protein 1.8 4.3E+02 0.018 11.1 0.0 7 6-12 23-29 (402) No 1 >2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* Probab=5.52 E-value=1.5e+02 Score=13.36 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=14.7 Q ss_pred CCCCHHHHHHHHHHCCCCHHHH Q ss_conf 3672267999997302222355 Q 537021.9.peg.9 8 NMNTESSLLLNQVCRKNTIFST 29 (32) Q Consensus 8 nmntesslllnqvcrkntifst 29 (32) ..|-++.-..-..+++|+||+. T Consensus 324 gtn~~tnP~am~~l~~~~IFtN 345 (608) T 2faf_A 324 GTSSRTNPNAMATIARNTIFTN 345 (608) T ss_dssp TCCTTTCHHHHHHTSBSCEEES T ss_pred CCCCCCCHHHHHHHHHCCEEEE T ss_conf 9886659999998752743677 No 2 >1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1 Probab=4.22 E-value=1.9e+02 Score=12.86 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=6.6 Q ss_pred HHHHHHHHCC Q ss_conf 7999997302 Q 537021.9.peg.9 14 SLLLNQVCRK 23 (32) Q Consensus 14 slllnqvcrk 23 (32) -.-+||||.. T Consensus 25 C~kmnqvcgt 34 (35) T 1sse_A 25 CSKMNQVCGT 34 (35) T ss_dssp HHHHHHTTSC T ss_pred HHHHHHHHCC T ss_conf 9999887457 No 3 >2wsc_I Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_I* 2wsf_I* 2o01_I* Probab=3.15 E-value=2.2e+02 Score=12.48 Aligned_cols=10 Identities=40% Similarity=0.454 Sum_probs=7.2 Q ss_pred HCCCCHHHHH Q ss_conf 3022223553 Q 537021.9.peg.9 21 CRKNTIFSTW 30 (32) Q Consensus 21 crkntifstw 30 (32) ..||.||++- T Consensus 28 vqknkif~~k 37 (40) T 2wsc_I 28 VEKRLLFSTK 37 (40) T ss_dssp TCC------- T ss_pred HHHHHHHHCC T ss_conf 8773441103 No 4 >3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens} Probab=2.82 E-value=2.1e+02 Score=12.61 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=5.7 Q ss_pred CCCCHHHHHC Q ss_conf 0222235531 Q 537021.9.peg.9 22 RKNTIFSTWI 31 (32) Q Consensus 22 rkntifstwi 31 (32) |+.-||++|. T Consensus 12 ~~~GIy~sW~ 21 (53) T 3bsu_A 12 RKTGVFLTWN 21 (53) T ss_dssp SSCEEESSHH T ss_pred CCCCEECCHH T ss_conf 9999437999 No 5 >1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2 Probab=2.72 E-value=2e+02 Score=12.70 Aligned_cols=10 Identities=40% Similarity=0.973 Sum_probs=5.7 Q ss_pred CCCCHHHHHC Q ss_conf 0222235531 Q 537021.9.peg.9 22 RKNTIFSTWI 31 (32) Q Consensus 22 rkntifstwi 31 (32) |+.-||++|. T Consensus 10 ~~~GIy~~W~ 19 (47) T 1qhk_A 10 RETGIYNTWN 19 (47) T ss_dssp SSCEEEEEHH T ss_pred CCCCEECCHH T ss_conf 9899578999 No 6 >2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A Probab=2.69 E-value=1e+02 Score=14.12 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=10.1 Q ss_pred HHHHHHCCCCHHHHHH-HHHHC Q ss_conf 3576523672267999-99730 Q 537021.9.peg.9 2 LIEKIANMNTESSLLL-NQVCR 22 (32) Q Consensus 2 liekianmntesslll-nqvcr 22 (32) ||..|..|-....-.| .-||| T Consensus 7 likriqamipkggrmlpqlvcr 28 (34) T 2dwf_A 7 LIKRIQAMIPKGGRMLPQLVCR 28 (34) T ss_dssp HHHHHHHHCTTCCSCCSHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHH T ss_conf 9999998777733013899988 No 7 >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transferase, structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Probab=2.06 E-value=4.5e+02 Score=10.99 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=14.9 Q ss_pred HCCCCHHHHHHHHHHCCCCH Q ss_conf 23672267999997302222 Q 537021.9.peg.9 7 ANMNTESSLLLNQVCRKNTI 26 (32) Q Consensus 7 anmntesslllnqvcrknti 26 (32) +.-|.++..++|+.|++..+ T Consensus 144 ~~Dn~~~r~~in~~c~~~~i 163 (292) T 3h8v_A 144 CVDNFEARMTINTACNELGQ 163 (292) T ss_dssp CCSSHHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHHHCC T ss_conf 67898888999999997099 No 8 >2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus} Probab=1.84 E-value=3.7e+02 Score=11.41 Aligned_cols=9 Identities=56% Similarity=0.940 Sum_probs=0.0 Q ss_pred CCCCHHHHH Q ss_conf 022223553 Q 537021.9.peg.9 22 RKNTIFSTW 30 (32) Q Consensus 22 rkntifstw 30 (32) +|..|||.+ T Consensus 20 kk~eifsnf 28 (28) T 2d11_E 20 RKREIFSNF 28 (28) T ss_pred HHHHHHHCC T ss_conf 887775159 No 9 >2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, 3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A* Probab=1.83 E-value=4.5e+02 Score=10.95 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=0.0 Q ss_pred HHHHHHCCCCH Q ss_conf 35765236722 Q 537021.9.peg.9 2 LIEKIANMNTE 12 (32) Q Consensus 2 liekianmnte 12 (32) |+||||..|.| T Consensus 35 l~ekl~~f~re 45 (483) T 2isa_A 35 FLEKLAHFDRE 45 (483) T ss_dssp HHHHHHHHTTC T ss_pred HHHHHHHCCCC T ss_conf 99998732544 No 10 >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Probab=1.80 E-value=4.3e+02 Score=11.09 Aligned_cols=7 Identities=57% Similarity=0.397 Sum_probs=0.0 Q ss_pred HHCCCCH Q ss_conf 5236722 Q 537021.9.peg.9 6 IANMNTE 12 (32) Q Consensus 6 ianmnte 12 (32) |||.||+ T Consensus 23 IANaNT~ 29 (402) T 3a69_A 23 IANSATY 29 (402) T ss_dssp HC----- T ss_pred HHHCCCH T ss_conf 9877764 Done!