Query         537021.9.peg.961_1
Match_columns 32
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 05:45:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_961.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2faf_A Phosphoenolpyruvate car   5.5 1.5E+02  0.0062   13.4   0.7   22    8-29    324-345 (608)
  2 1sse_A AP-1 like transcription   4.2 1.9E+02  0.0078   12.9   0.5   10   14-23     25-34  (35)
  3 2wsc_I Photosystem I reaction    3.1 2.2E+02  0.0094   12.5   0.1   10   21-30     28-37  (40)
  4 3bsu_A Ribonuclease H1, RNAse    2.8 2.1E+02  0.0088   12.6  -0.4   10   22-31     12-21  (53)
  5 1qhk_A RNAse HI, protein (ribo   2.7   2E+02  0.0084   12.7  -0.5   10   22-31     10-19  (47)
  6 2dwf_A Pulmonary surfactant-as   2.7   1E+02  0.0043   14.1  -2.1   21    2-22      7-28  (34)
  7 3h8v_A Ubiquitin-like modifier   2.1 4.5E+02   0.019   11.0   1.1   20    7-26    144-163 (292)
  8 2d11_E Na(+)/H(+) exchange reg   1.8 3.7E+02   0.015   11.4  -0.3    9   22-30     20-28  (28)
  9 2isa_A Catalase; peroxidase, h   1.8 4.5E+02   0.019   10.9   0.2   11    2-12     35-45  (483)
 10 3a69_A Flagellar HOOK protein    1.8 4.3E+02   0.018   11.1   0.0    7    6-12     23-29  (402)

No 1  
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=5.52  E-value=1.5e+02  Score=13.36  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=14.7

Q ss_pred             CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf             3672267999997302222355
Q 537021.9.peg.9    8 NMNTESSLLLNQVCRKNTIFST   29 (32)
Q Consensus         8 nmntesslllnqvcrkntifst   29 (32)
                      ..|-++.-..-..+++|+||+.
T Consensus       324 gtn~~tnP~am~~l~~~~IFtN  345 (608)
T 2faf_A          324 GTSSRTNPNAMATIARNTIFTN  345 (608)
T ss_dssp             TCCTTTCHHHHHHTSBSCEEES
T ss_pred             CCCCCCCHHHHHHHHHCCEEEE
T ss_conf             9886659999998752743677


No 2  
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=4.22  E-value=1.9e+02  Score=12.86  Aligned_cols=10  Identities=40%  Similarity=0.640  Sum_probs=6.6

Q ss_pred             HHHHHHHHCC
Q ss_conf             7999997302
Q 537021.9.peg.9   14 SLLLNQVCRK   23 (32)
Q Consensus        14 slllnqvcrk   23 (32)
                      -.-+||||..
T Consensus        25 C~kmnqvcgt   34 (35)
T 1sse_A           25 CSKMNQVCGT   34 (35)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHHHCC
T ss_conf             9999887457


No 3  
>2wsc_I Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_I* 2wsf_I* 2o01_I*
Probab=3.15  E-value=2.2e+02  Score=12.48  Aligned_cols=10  Identities=40%  Similarity=0.454  Sum_probs=7.2

Q ss_pred             HCCCCHHHHH
Q ss_conf             3022223553
Q 537021.9.peg.9   21 CRKNTIFSTW   30 (32)
Q Consensus        21 crkntifstw   30 (32)
                      ..||.||++-
T Consensus        28 vqknkif~~k   37 (40)
T 2wsc_I           28 VEKRLLFSTK   37 (40)
T ss_dssp             TCC-------
T ss_pred             HHHHHHHHCC
T ss_conf             8773441103


No 4  
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=2.82  E-value=2.1e+02  Score=12.61  Aligned_cols=10  Identities=50%  Similarity=0.973  Sum_probs=5.7

Q ss_pred             CCCCHHHHHC
Q ss_conf             0222235531
Q 537021.9.peg.9   22 RKNTIFSTWI   31 (32)
Q Consensus        22 rkntifstwi   31 (32)
                      |+.-||++|.
T Consensus        12 ~~~GIy~sW~   21 (53)
T 3bsu_A           12 RKTGVFLTWN   21 (53)
T ss_dssp             SSCEEESSHH
T ss_pred             CCCCEECCHH
T ss_conf             9999437999


No 5  
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=2.72  E-value=2e+02  Score=12.70  Aligned_cols=10  Identities=40%  Similarity=0.973  Sum_probs=5.7

Q ss_pred             CCCCHHHHHC
Q ss_conf             0222235531
Q 537021.9.peg.9   22 RKNTIFSTWI   31 (32)
Q Consensus        22 rkntifstwi   31 (32)
                      |+.-||++|.
T Consensus        10 ~~~GIy~~W~   19 (47)
T 1qhk_A           10 RETGIYNTWN   19 (47)
T ss_dssp             SSCEEEEEHH
T ss_pred             CCCCEECCHH
T ss_conf             9899578999


No 6  
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=2.69  E-value=1e+02  Score=14.12  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=10.1

Q ss_pred             HHHHHHCCCCHHHHHH-HHHHC
Q ss_conf             3576523672267999-99730
Q 537021.9.peg.9    2 LIEKIANMNTESSLLL-NQVCR   22 (32)
Q Consensus         2 liekianmntesslll-nqvcr   22 (32)
                      ||..|..|-....-.| .-|||
T Consensus         7 likriqamipkggrmlpqlvcr   28 (34)
T 2dwf_A            7 LIKRIQAMIPKGGRMLPQLVCR   28 (34)
T ss_dssp             HHHHHHHHCTTCCSCCSHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHH
T ss_conf             9999998777733013899988


No 7  
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transferase, structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=2.06  E-value=4.5e+02  Score=10.99  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=14.9

Q ss_pred             HCCCCHHHHHHHHHHCCCCH
Q ss_conf             23672267999997302222
Q 537021.9.peg.9    7 ANMNTESSLLLNQVCRKNTI   26 (32)
Q Consensus         7 anmntesslllnqvcrknti   26 (32)
                      +.-|.++..++|+.|++..+
T Consensus       144 ~~Dn~~~r~~in~~c~~~~i  163 (292)
T 3h8v_A          144 CVDNFEARMTINTACNELGQ  163 (292)
T ss_dssp             CCSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHCC
T ss_conf             67898888999999997099


No 8  
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=1.84  E-value=3.7e+02  Score=11.41  Aligned_cols=9  Identities=56%  Similarity=0.940  Sum_probs=0.0

Q ss_pred             CCCCHHHHH
Q ss_conf             022223553
Q 537021.9.peg.9   22 RKNTIFSTW   30 (32)
Q Consensus        22 rkntifstw   30 (32)
                      +|..|||.+
T Consensus        20 kk~eifsnf   28 (28)
T 2d11_E           20 RKREIFSNF   28 (28)
T ss_pred             HHHHHHHCC
T ss_conf             887775159


No 9  
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, 3D-structure, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida LFI1238} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
Probab=1.83  E-value=4.5e+02  Score=10.95  Aligned_cols=11  Identities=36%  Similarity=0.764  Sum_probs=0.0

Q ss_pred             HHHHHHCCCCH
Q ss_conf             35765236722
Q 537021.9.peg.9    2 LIEKIANMNTE   12 (32)
Q Consensus         2 liekianmnte   12 (32)
                      |+||||..|.|
T Consensus        35 l~ekl~~f~re   45 (483)
T 2isa_A           35 FLEKLAHFDRE   45 (483)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHCCCC
T ss_conf             99998732544


No 10 
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=1.80  E-value=4.3e+02  Score=11.09  Aligned_cols=7  Identities=57%  Similarity=0.397  Sum_probs=0.0

Q ss_pred             HHCCCCH
Q ss_conf             5236722
Q 537021.9.peg.9    6 IANMNTE   12 (32)
Q Consensus         6 ianmnte   12 (32)
                      |||.||+
T Consensus        23 IANaNT~   29 (402)
T 3a69_A           23 IANSATY   29 (402)
T ss_dssp             HC-----
T ss_pred             HHHCCCH
T ss_conf             9877764


Done!