Query 537021.9.peg.961_1 Match_columns 32 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 04:20:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_961.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2bcgg3 d.16.1.6 (G:302-399) G 7.5 31 0.0023 15.5 -0.6 24 6-29 18-45 (98) 2 d1d5ta2 d.16.1.6 (A:292-388) G 7.3 32 0.0023 15.4 -0.6 23 6-28 17-43 (97) 3 d2gnoa1 a.80.1.1 (A:209-306) g 3.5 1.6E+02 0.012 12.0 0.9 12 4-15 75-86 (98) 4 d1khba1 c.91.1.1 (A:260-622) C 3.4 1.6E+02 0.011 12.0 0.7 18 12-29 83-100 (363) 5 d1ef1a3 d.15.1.4 (A:4-87) Moes 3.3 1.8E+02 0.013 11.8 1.1 22 9-30 19-40 (84) 6 d1h4ra3 d.15.1.4 (A:20-103) Me 2.8 2E+02 0.015 11.5 1.1 21 9-29 20-40 (84) 7 d1fs1a1 a.158.1.1 (A:109-149) 2.8 2E+02 0.015 11.5 0.7 18 6-23 13-30 (41) 8 d1gg3a3 d.15.1.4 (A:1-81) Eryt 2.7 2E+02 0.014 11.6 0.7 19 10-28 20-38 (81) 9 d1kxpd1 a.126.1.1 (D:17-214) V 2.5 1.7E+02 0.013 11.9 0.1 18 11-28 70-87 (198) 10 d1qhka_ d.100.1.2 (A:) N-termi 2.4 1.3E+02 0.0097 12.4 -0.5 9 22-30 10-18 (47) No 1 >d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=7.53 E-value=31 Score=15.51 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=14.1 Q ss_pred HHCCCCHHH----HHHHHHHCCCCHHHH Q ss_conf 523672267----999997302222355 Q 537021.9.peg.9 6 IANMNTESS----LLLNQVCRKNTIFST 29 (32) Q Consensus 6 ianmntess----lllnqvcrkntifst 29 (32) |.|.+..+| +--+||-|||.||-. T Consensus 18 ipnt~~a~S~QIIiPq~Qv~Rk~DIYv~ 45 (98) T d2bcgg3 18 VPNTSNADSLQIIIPQSQLGRKSDIYVA 45 (98) T ss_dssp CTTSTTCSSEEEEECGGGTTCSSCEEEE T ss_pred CCCCCCCCEEEEEEEHHHHCCCCCEEEE T ss_conf 5898988507899736781977688999 No 2 >d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Probab=7.35 E-value=32 Score=15.44 Aligned_cols=23 Identities=43% Similarity=0.483 Sum_probs=13.7 Q ss_pred HHCCCCHHHH----HHHHHHCCCCHHH Q ss_conf 5236722679----9999730222235 Q 537021.9.peg.9 6 IANMNTESSL----LLNQVCRKNTIFS 28 (32) Q Consensus 6 ianmntessl----llnqvcrkntifs 28 (32) |.|.+..+|. --+||-|||.||- T Consensus 17 Ipnt~~a~S~QIIiPq~Qv~Rk~DIYv 43 (97) T d1d5ta2 17 IKNTNDANSCQIIIPQNQVNRKSDIYV 43 (97) T ss_dssp CTTSTTCSSEEEEECGGGTTCSSCEEE T ss_pred CCCCCCCCCEEEEEEHHHHCCCCCEEE T ss_conf 699898840789963178365798899 No 3 >d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]} Probab=3.48 E-value=1.6e+02 Score=11.99 Aligned_cols=12 Identities=50% Similarity=0.645 Sum_probs=7.6 Q ss_pred HHHHCCCCHHHH Q ss_conf 765236722679 Q 537021.9.peg.9 4 EKIANMNTESSL 15 (32) Q Consensus 4 ekianmntessl 15 (32) -|+||.|+.-.| T Consensus 75 vk~anln~~~tl 86 (98) T d2gnoa1 75 VKIANLNNKLTL 86 (98) T ss_dssp CCGGGCCHHHHH T ss_pred HHHCCCCCHHHH T ss_conf 986033540226 No 4 >d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} Probab=3.40 E-value=1.6e+02 Score=12.05 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=11.2 Q ss_pred HHHHHHHHHHCCCCHHHH Q ss_conf 267999997302222355 Q 537021.9.peg.9 12 ESSLLLNQVCRKNTIFST 29 (32) Q Consensus 12 esslllnqvcrkntifst 29 (32) ++.-..-..+++|+||+. T Consensus 83 ~tnp~am~~l~~~~IFTN 100 (363) T d1khba1 83 KTNPNAIKTIQKNTIFTN 100 (363) T ss_dssp TTCHHHHHHTTBSCEEES T ss_pred CCCHHHHHHHCCCCEEEE T ss_conf 889999997536852443 No 5 >d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Probab=3.26 E-value=1.8e+02 Score=11.78 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=14.6 Q ss_pred CCCHHHHHHHHHHCCCCHHHHH Q ss_conf 6722679999973022223553 Q 537021.9.peg.9 9 MNTESSLLLNQVCRKNTIFSTW 30 (32) Q Consensus 9 mntesslllnqvcrkntifstw 30 (32) -.+...-|+++||+.-.|..+| T Consensus 19 ~~a~G~~l~~~Vc~~l~L~E~d 40 (84) T d1ef1a3 19 PNTTGKQLFDQVVKTIGLREVW 40 (84) T ss_dssp TTCBHHHHHHHHHHHHTCCCGG T ss_pred CCCHHHHHHHHHHHHCCCCCCC T ss_conf 8991999999999885976356 No 6 >d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.83 E-value=2e+02 Score=11.54 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=14.1 Q ss_pred CCCHHHHHHHHHHCCCCHHHH Q ss_conf 672267999997302222355 Q 537021.9.peg.9 9 MNTESSLLLNQVCRKNTIFST 29 (32) Q Consensus 9 mntesslllnqvcrkntifst 29 (32) -.+...-|+++||+.-.|... T Consensus 20 ~~a~G~~L~d~Vc~~L~L~E~ 40 (84) T d1h4ra3 20 MKWKGKDLFDLVCRTLGLRET 40 (84) T ss_dssp TTCBHHHHHHHHHHHHTCCCG T ss_pred CCCHHHHHHHHHHHHCCCCCC T ss_conf 899189999999988597524 No 7 >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Probab=2.76 E-value=2e+02 Score=11.53 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=11.1 Q ss_pred HHCCCCHHHHHHHHHHCC Q ss_conf 523672267999997302 Q 537021.9.peg.9 6 IANMNTESSLLLNQVCRK 23 (32) Q Consensus 6 ianmntesslllnqvcrk 23 (32) ...++..+-.-+.+|||. T Consensus 13 f~~L~~~dl~~~~~Vcr~ 30 (41) T d1fs1a1 13 FSCLCLPELLKVSGVCKR 30 (41) T ss_dssp HTTSCGGGHHHHHTTCHH T ss_pred HHCCCHHHHHHHHHHHHH T ss_conf 986999999999999999 No 8 >d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Probab=2.75 E-value=2e+02 Score=11.56 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=13.1 Q ss_pred CCHHHHHHHHHHCCCCHHH Q ss_conf 7226799999730222235 Q 537021.9.peg.9 10 NTESSLLLNQVCRKNTIFS 28 (32) Q Consensus 10 ntesslllnqvcrkntifs 28 (32) .+...-|+++||+.-.|.. T Consensus 20 ~~~G~~l~~~Vc~~l~l~E 38 (81) T d1gg3a3 20 HAKGQDLLKRVCEHLNLLE 38 (81) T ss_dssp TCCHHHHHHHHHHHHTTCS T ss_pred CCCHHHHHHHHHHHCCCCC T ss_conf 9919999999998869863 No 9 >d1kxpd1 a.126.1.1 (D:17-214) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=2.49 E-value=1.7e+02 Score=11.86 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.3 Q ss_pred CHHHHHHHHHHCCCCHHH Q ss_conf 226799999730222235 Q 537021.9.peg.9 11 TESSLLLNQVCRKNTIFS 28 (32) Q Consensus 11 tesslllnqvcrkntifs 28 (32) .+.+++++++|+....++ T Consensus 70 ~~~~~~~~~iC~~~~~~~ 87 (198) T d1kxpd1 70 TRTSALSAKSCESNSPFP 87 (198) T ss_dssp HHHHHHHHHTTSTTCSSC T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 689999998736887788 No 10 >d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=2.42 E-value=1.3e+02 Score=12.40 Aligned_cols=9 Identities=44% Similarity=1.184 Sum_probs=0.0 Q ss_pred CCCCHHHHH Q ss_conf 022223553 Q 537021.9.peg.9 22 RKNTIFSTW 30 (32) Q Consensus 22 rkntifstw 30 (32) |+..||++| T Consensus 10 ~~~GIy~~W 18 (47) T d1qhka_ 10 RETGIYNTW 18 (47) T ss_dssp SSCEEEEEH T ss_pred CCCCCCCCH T ss_conf 988833899 Done!