Query 537021.9.peg.97_1
Match_columns 55
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 16:11:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_97.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n81_A Plasmodium falciparum g 25.2 26 0.0011 16.2 1.6 11 14-24 128-138 (186)
2 2krc_A DNA-directed RNA polyme 10.9 46 0.0019 14.7 0.1 44 7-52 33-76 (99)
3 2rjp_A Adamts-4; metalloprotea 9.8 28 0.0012 16.0 -1.3 28 24-51 24-51 (316)
4 1skv_A ORF D-63, hypothetical 9.5 1E+02 0.0042 12.9 3.8 27 15-41 7-33 (69)
5 2eap_A Lymphocyte cytosolic pr 9.4 78 0.0033 13.5 0.8 18 37-54 47-65 (90)
6 2daj_A KIAA0977 protein, COBL- 8.7 1E+02 0.0042 12.9 1.2 16 7-22 34-49 (91)
7 3kmi_A Putative membrane prote 6.4 1.4E+02 0.0059 12.0 2.7 25 29-53 153-177 (177)
8 3ku7_A MINE, cell division top 6.2 1.4E+02 0.006 12.0 1.0 18 19-36 38-55 (80)
9 1hxr_A Guanine nucleotide exch 5.6 39 0.0016 15.1 -2.2 9 39-47 65-73 (115)
10 2kxo_A Cell division topologic 5.5 1.2E+02 0.0052 12.3 0.3 18 19-36 40-57 (95)
No 1
>1n81_A Plasmodium falciparum gamete antigen 27/25; gametocyte, helical, helix-turn-helix, PXXP, unknown function; 2.10A {Plasmodium falciparum 3D7} SCOP: a.185.1.1
Probab=25.17 E-value=26 Score=16.17 Aligned_cols=11 Identities=73% Similarity=0.706 Sum_probs=8.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 73332104678
Q 537021.9.peg.9 14 CKKREMNDLKL 24 (55)
Q Consensus 14 ckkremndlkl 24 (55)
-|||-|||++|
T Consensus 128 eKKrviNdl~l 138 (186)
T 1n81_A 128 EKKRIMNDKKL 138 (186)
T ss_dssp HHHHHHTCHHH
T ss_pred HHHHHHCHHHH
T ss_conf 89988530999
No 2
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=10.87 E-value=46 Score=14.75 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 8899999733321046786999999999999999999533013641
Q 537021.9.peg.9 7 RSLLAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIKK 52 (55)
Q Consensus 7 rsllaiickkremndlkldikavvsvffnilidiwrflnigknikk 52 (55)
+.|+.-|++...+.+- ++++.++-|++-|+-==||.++|.|.=.
T Consensus 33 ~dL~~eI~~~~~~s~~--e~~~~iaq~YTdLn~DgRFv~lG~n~Wg 76 (99)
T 2krc_A 33 QELLNEIASLLGVKKE--ELGDRIAQFYTDLNIDGRFLALSDQTWG 76 (99)
T ss_dssp HHHHHHHHHHHTSCGG--GGTHHHHHHHHHHHTCSSCEESSSSEEE
T ss_pred HHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHCCCEEEECCCCEE
T ss_conf 9999999999688876--8999999999998605862780799582
No 3
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=9.80 E-value=28 Score=15.95 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 8699999999999999999953301364
Q 537021.9.peg.9 24 LDIKAVVSVFFNILIDIWRFLNIGKNIK 51 (55)
Q Consensus 24 ldikavvsvffnilidiwrflnigknik 51 (55)
-+++..+..++|+.-.++|.++||-+|.
T Consensus 24 ~~~~~~i~~~~n~v~~iy~~~si~~~i~ 51 (316)
T 2rjp_A 24 AGLKRYLLTVMAAAAKAFKHPSIRNPVS 51 (316)
T ss_dssp GGHHHHHHHHHHHHHHHTTSGGGCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 7899999999999999973565687579
No 4
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=9.52 E-value=1e+02 Score=12.86 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333210467869999999999999999
Q 537021.9.peg.9 15 KKREMNDLKLDIKAVVSVFFNILIDIW 41 (55)
Q Consensus 15 kkremndlkldikavvsvffnilidiw 41 (55)
.|.-.-+|.-|+....|+.-||-||+-
T Consensus 7 ekeLfleLDediRELLSiIh~iKID~i 33 (69)
T 1skv_A 7 EKELFEMLDEDVRELLSLIHEIKIDRI 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999986999999999988623576
No 5
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.35 E-value=78 Score=13.48 Aligned_cols=18 Identities=56% Similarity=0.800 Sum_probs=12.7
Q ss_pred HHHHHHHHHHCCH-HHHCC
Q ss_conf 9999999533013-64178
Q 537021.9.peg.9 37 LIDIWRFLNIGKN-IKKLP 54 (55)
Q Consensus 37 lidiwrflnigkn-ikklp 54 (55)
-|+--||||...| |+|.|
T Consensus 47 ~I~G~RFLnmseNDiqkFP 65 (90)
T 2eap_A 47 HIDGARFLNLTENDIQKFP 65 (90)
T ss_dssp TCCHHHHHTCCHHHHTTSC
T ss_pred CCCHHHHHCCCHHHHHHCC
T ss_conf 7862888515576788686
No 6
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.71 E-value=1e+02 Score=12.88 Aligned_cols=16 Identities=44% Similarity=0.752 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8899999733321046
Q 537021.9.peg.9 7 RSLLAIICKKREMNDL 22 (55)
Q Consensus 7 rsllaiickkremndl 22 (55)
..++.+||.|.++.-.
T Consensus 34 ~ellp~IC~k~~ldp~ 49 (91)
T 2daj_A 34 QELAPIICSKCEFDPL 49 (91)
T ss_dssp TTHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHCCCCHH
T ss_conf 9999999876288978
No 7
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.96A {Clostridium difficile 630}
Probab=6.39 E-value=1.4e+02 Score=12.04 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHC
Q ss_conf 9999999999999995330136417
Q 537021.9.peg.9 29 VVSVFFNILIDIWRFLNIGKNIKKL 53 (55)
Q Consensus 29 vvsvffnilidiwrflnigknikkl 53 (55)
.-+..|.+|-|+=+||.|-||.+.|
T Consensus 153 ~RA~Lfq~l~dlE~fL~iKk~~~~~ 177 (177)
T 3kmi_A 153 NRAILFLCLTELKQFLVNRKHAQML 177 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999999998605369
No 8
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=6.25 E-value=1.4e+02 Score=11.99 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 104678699999999999
Q 537021.9.peg.9 19 MNDLKLDIKAVVSVFFNI 36 (55)
Q Consensus 19 mndlkldikavvsvffni 36 (55)
|..+|-||-+|+|-++.|
T Consensus 38 l~~lk~dil~VIsKY~~i 55 (80)
T 3ku7_A 38 MEEMRKEIIAVIQKYTKS 55 (80)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999986677
No 9
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=5.60 E-value=39 Score=15.15 Aligned_cols=9 Identities=44% Similarity=0.966 Sum_probs=0.0
Q ss_pred HHHHHHHHC
Q ss_conf 999995330
Q 537021.9.peg.9 39 DIWRFLNIG 47 (55)
Q Consensus 39 diwrflnig 47 (55)
|+|-|-|||
T Consensus 65 Dm~~FeNIG 73 (115)
T 1hxr_A 65 DMFIFENVG 73 (115)
T ss_dssp CGGGCSSCE
T ss_pred CCCCCEEEE
T ss_conf 422100023
No 10
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=5.55 E-value=1.2e+02 Score=12.34 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 104678699999999999
Q 537021.9.peg.9 19 MNDLKLDIKAVVSVFFNI 36 (55)
Q Consensus 19 mndlkldikavvsvffni 36 (55)
|..++-||-.|+|-+++|
T Consensus 40 l~~lk~dIl~VIsKYv~I 57 (95)
T 2kxo_A 40 LPTLRKALMEVLSKYVNV 57 (95)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHEEE
T ss_conf 999999999999987221
Done!