RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.97_1
         (55 letters)



>gnl|CDD|146680 pfam04168, DUF403, Bacterial domain of unknown function (DUF403). 
          Length = 312

 Score = 24.9 bits (55), Expect = 4.7
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 39  DIWRFLNIGKNI 50
           + WRFL +G+ +
Sbjct: 157 EGWRFLRLGRFL 168


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.333    0.147    0.450 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 672,642
Number of extensions: 24596
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 4
Length of query: 55
Length of database: 6,263,737
Length adjustment: 28
Effective length of query: 27
Effective length of database: 5,658,685
Effective search space: 152784495
Effective search space used: 152784495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.0 bits)