RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.97_1
         (55 letters)



>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on
          PAIR of basic residues, extracellular matrix,
          glycoprotein, hydrolase, metal-binding; HET: NAG BAT;
          2.60A {Homo sapiens} (A:1-158)
          Length = 158

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 4/42 (9%), Positives = 15/42 (35%)

Query: 10 LAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIK 51
          L ++            ++  +    +I   ++   +I  +I+
Sbjct: 10 LLLVADASMARLYGRGLQHYLLTLASIANRLYSHASIENHIR 51


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.147    0.450 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 410,810
Number of extensions: 12541
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 55
Length of database: 4,956,049
Length adjustment: 25
Effective length of query: 30
Effective length of database: 4,110,924
Effective search space: 123327720
Effective search space used: 123327720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.6 bits)