BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.97_1
         (55 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.97_1 
          Length = 55

 Score =  109 bits (273), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  LAACYHRSLLAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIKKLPI 55
          LAACYHRSLLAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIKKLPI
Sbjct: 1  LAACYHRSLLAIICKKREMNDLKLDIKAVVSVFFNILIDIWRFLNIGKNIKKLPI 55


>gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 332

 Score = 23.5 bits (49), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 29 VVSVFFNILIDIWRFLNIGKNIKKLP 54
          VV VFF+IL   W++ +  K  +  P
Sbjct: 61 VVPVFFSILFFAWKYRSTNKKARYDP 86


>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 21.2 bits (43), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 39  DIWRFLNIGKNIKK 52
           DIW+  NI K++KK
Sbjct: 152 DIWKNSNICKHLKK 165


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 20.4 bits (41), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 16/30 (53%)

Query: 24   LDIKAVVSVFFNILIDIWRFLNIGKNIKKL 53
            +DI         +++D+W  +++G  + +L
Sbjct: 1459 IDISETCDTSLLVVLDMWSAISVGLGVDRL 1488


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.147    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,887
Number of Sequences: 1233
Number of extensions: 945
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 55
length of database: 328,796
effective HSP length: 27
effective length of query: 28
effective length of database: 295,505
effective search space:  8274140
effective search space used:  8274140
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 31 (16.5 bits)