Query         537021.9.peg.98_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Mon May 23 14:22:21 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_98.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2eyqa5 c.37.1.19 (A:779-989)   19.3      26  0.0019   16.2   1.9   19   11-29     68-86  (211)
  2 d1hf2a2 c.102.1.1 (A:1-99) Cel  13.9      18  0.0013   17.0  -0.0   12   19-30     35-46  (99)
  3 d1xs8a_ d.279.1.1 (A:) Hypothe   5.2 1.3E+02  0.0093   12.9   1.9   19   12-30     63-81  (91)
  4 d1kfia4 d.129.2.1 (A:444-572)    5.1      67  0.0049   14.2  -0.1   12   11-22     13-24  (129)
  5 d1nu9c2 a.8.6.1 (C:146-281) St   4.9 1.4E+02  0.0098   12.8   1.5   13   13-25     71-83  (136)
  6 d1gm5a4 c.37.1.19 (A:550-755)    4.6 1.4E+02    0.01   12.7   1.6   17   13-29     77-93  (206)
  7 d3pmga4 d.129.2.1 (A:421-561)    4.1      84  0.0061   13.8  -0.1   13   10-22     12-24  (141)
  8 d2otaa1 a.284.1.1 (A:7-68) Hyp   4.0 1.6E+02   0.012   12.5   1.5   14   11-24      2-15  (62)
  9 d1aopa1 d.58.36.1 (A:81-145) S   3.9 1.6E+02   0.012   12.4   1.9   25   10-34     14-39  (65)
 10 d1vyia_ d.293.1.1 (A:) Phospho   3.7 1.7E+02   0.012   12.4   1.1   16    8-23     91-106 (111)

No 1  
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=19.34  E-value=26  Score=16.19  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=14.7

Q ss_pred             EHHHHHHHHHHHHCCCCCC
Q ss_conf             3368999998862264210
Q 537021.9.peg.9   11 QTKRLEKIMNDFFSGGSRI   29 (37)
Q Consensus        11 qtkrlekimndffsggsri   29 (37)
                      ..+..|++|++|.+|-..|
T Consensus        68 ~~~eke~im~~F~~g~~~I   86 (211)
T d2eyqa5          68 RERELERVMNDFHHQRFNV   86 (211)
T ss_dssp             CHHHHHHHHHHHHTTSCCE
T ss_pred             CHHHHHHHHHHHHCCCCCE
T ss_conf             8888999999998298626


No 2  
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.88  E-value=18  Score=16.97  Aligned_cols=12  Identities=50%  Similarity=1.002  Sum_probs=9.5

Q ss_pred             HHHHHCCCCCCC
Q ss_conf             988622642102
Q 537021.9.peg.9   19 MNDFFSGGSRIT   30 (37)
Q Consensus        19 mndffsggsrit   30 (37)
                      |.+||++|.+|.
T Consensus        35 m~~FFa~gdkI~   46 (99)
T d1hf2a2          35 MGGFFAKGDRIS   46 (99)
T ss_dssp             TGGGCCTTCEEE
T ss_pred             HHHHHCCCCEEE
T ss_conf             886633788799


No 3  
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=5.24  E-value=1.3e+02  Score=12.92  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             3689999988622642102
Q 537021.9.peg.9   12 TKRLEKIMNDFFSGGSRIT   30 (37)
Q Consensus        12 tkrlekimndffsggsrit   30 (37)
                      .+-|++-|..||.|+.--.
T Consensus        63 R~~L~~qm~~Flf~~~~~~   81 (91)
T d1xs8a_          63 RKLLEQEMVSFLFEGKDVH   81 (91)
T ss_dssp             HHHHHHHHHHHHTCCCSSC
T ss_pred             HHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999845898878


No 4  
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Probab=5.06  E-value=67  Score=14.24  Aligned_cols=12  Identities=17%  Similarity=0.390  Sum_probs=4.8

Q ss_pred             EHHHHHHHHHHH
Q ss_conf             336899999886
Q 537021.9.peg.9   11 QTKRLEKIMNDF   22 (37)
Q Consensus        11 qtkrlekimndf   22 (37)
                      .+..-+++|++.
T Consensus        13 ds~~A~~~m~~L   24 (129)
T d1kfia4          13 DSAGANKMMEHL   24 (129)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
T ss_conf             839999999999


No 5  
>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=4.90  E-value=1.4e+02  Score=12.80  Aligned_cols=13  Identities=54%  Similarity=0.874  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             6899999886226
Q 537021.9.peg.9   13 KRLEKIMNDFFSG   25 (37)
Q Consensus        13 krlekimndffsg   25 (37)
                      +-||-|..|||.-
T Consensus        71 ~DLeSIIDdFF~e   83 (136)
T d1nu9c2          71 KDLESIIEDFFIE   83 (136)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8899999999988


No 6  
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.64  E-value=1.4e+02  Score=12.70  Aligned_cols=17  Identities=24%  Similarity=0.477  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             68999998862264210
Q 537021.9.peg.9   13 KRLEKIMNDFFSGGSRI   29 (37)
Q Consensus        13 krlekimndffsggsri   29 (37)
                      +..|++|++|.+|-..|
T Consensus        77 ~eke~~m~~F~~g~~~i   93 (206)
T d1gm5a4          77 EEKDRVMLEFAEGRYDI   93 (206)
T ss_dssp             SCSHHHHHHHTTTSSSB
T ss_pred             HHHHHHHHHHHCCCEEE
T ss_conf             99999999997798789


No 7  
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.14  E-value=84  Score=13.78  Aligned_cols=13  Identities=31%  Similarity=0.567  Sum_probs=6.5

Q ss_pred             EEHHHHHHHHHHH
Q ss_conf             6336899999886
Q 537021.9.peg.9   10 VQTKRLEKIMNDF   22 (37)
Q Consensus        10 vqtkrlekimndf   22 (37)
                      |.+..-+++|.+.
T Consensus        12 v~s~~A~~~m~~L   24 (141)
T d3pmga4          12 VEAEGATKMMKDL   24 (141)
T ss_dssp             ECHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
T ss_conf             8879999999999


No 8  
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=4.03  E-value=1.6e+02  Score=12.45  Aligned_cols=14  Identities=36%  Similarity=0.752  Sum_probs=10.7

Q ss_pred             EHHHHHHHHHHHHC
Q ss_conf             33689999988622
Q 537021.9.peg.9   11 QTKRLEKIMNDFFS   24 (37)
Q Consensus        11 qtkrlekimndffs   24 (37)
                      +.+..|+|++|...
T Consensus         2 s~~qvE~il~eli~   15 (62)
T d2otaa1           2 SNERVEKIIQDLLD   15 (62)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             67889999999999


No 9  
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=3.88  E-value=1.6e+02  Score=12.39  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             EEHHHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf             633689999988622-6421027520
Q 537021.9.peg.9   10 VQTKRLEKIMNDFFS-GGSRITNNQF   34 (37)
Q Consensus        10 vqtkrlekimndffs-ggsritnnqf   34 (37)
                      -|-+.+..+-.+|.+ |--++|..|-
T Consensus        14 ~ql~~la~ia~kyg~~g~i~~TtRQ~   39 (65)
T d1aopa1          14 KQWQAIDKFAGENTIYGSIRLTNRQT   39 (65)
T ss_dssp             HHHHHHHHHHHHHBSSCCEEECTTSC
T ss_pred             HHHHHHHHHHHHHCCCCCEEECCCCE
T ss_conf             99999999999966798365637315


No 10 
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=3.67  E-value=1.7e+02  Score=12.37  Aligned_cols=16  Identities=44%  Similarity=0.656  Sum_probs=11.4

Q ss_pred             EEEEHHHHHHHHHHHH
Q ss_conf             7763368999998862
Q 537021.9.peg.9    8 YLVQTKRLEKIMNDFF   23 (37)
Q Consensus         8 ylvqtkrlekimndff   23 (37)
                      .||.+..|.|||.|-.
T Consensus        91 lLv~~dKl~kimQdDl  106 (111)
T d1vyia_          91 LLVEADKLSKIMQDDL  106 (111)
T ss_dssp             HHBCHHHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHHH
T ss_conf             3117799999999998


Done!