Query 537021.9.peg.98_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Mon May 23 14:22:21 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_98.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2eyqa5 c.37.1.19 (A:779-989) 19.3 26 0.0019 16.2 1.9 19 11-29 68-86 (211) 2 d1hf2a2 c.102.1.1 (A:1-99) Cel 13.9 18 0.0013 17.0 -0.0 12 19-30 35-46 (99) 3 d1xs8a_ d.279.1.1 (A:) Hypothe 5.2 1.3E+02 0.0093 12.9 1.9 19 12-30 63-81 (91) 4 d1kfia4 d.129.2.1 (A:444-572) 5.1 67 0.0049 14.2 -0.1 12 11-22 13-24 (129) 5 d1nu9c2 a.8.6.1 (C:146-281) St 4.9 1.4E+02 0.0098 12.8 1.5 13 13-25 71-83 (136) 6 d1gm5a4 c.37.1.19 (A:550-755) 4.6 1.4E+02 0.01 12.7 1.6 17 13-29 77-93 (206) 7 d3pmga4 d.129.2.1 (A:421-561) 4.1 84 0.0061 13.8 -0.1 13 10-22 12-24 (141) 8 d2otaa1 a.284.1.1 (A:7-68) Hyp 4.0 1.6E+02 0.012 12.5 1.5 14 11-24 2-15 (62) 9 d1aopa1 d.58.36.1 (A:81-145) S 3.9 1.6E+02 0.012 12.4 1.9 25 10-34 14-39 (65) 10 d1vyia_ d.293.1.1 (A:) Phospho 3.7 1.7E+02 0.012 12.4 1.1 16 8-23 91-106 (111) No 1 >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Probab=19.34 E-value=26 Score=16.19 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=14.7 Q ss_pred EHHHHHHHHHHHHCCCCCC Q ss_conf 3368999998862264210 Q 537021.9.peg.9 11 QTKRLEKIMNDFFSGGSRI 29 (37) Q Consensus 11 qtkrlekimndffsggsri 29 (37) ..+..|++|++|.+|-..| T Consensus 68 ~~~eke~im~~F~~g~~~I 86 (211) T d2eyqa5 68 RERELERVMNDFHHQRFNV 86 (211) T ss_dssp CHHHHHHHHHHHHTTSCCE T ss_pred CHHHHHHHHHHHHCCCCCE T ss_conf 8888999999998298626 No 2 >d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=13.88 E-value=18 Score=16.97 Aligned_cols=12 Identities=50% Similarity=1.002 Sum_probs=9.5 Q ss_pred HHHHHCCCCCCC Q ss_conf 988622642102 Q 537021.9.peg.9 19 MNDFFSGGSRIT 30 (37) Q Consensus 19 mndffsggsrit 30 (37) |.+||++|.+|. T Consensus 35 m~~FFa~gdkI~ 46 (99) T d1hf2a2 35 MGGFFAKGDRIS 46 (99) T ss_dssp TGGGCCTTCEEE T ss_pred HHHHHCCCCEEE T ss_conf 886633788799 No 3 >d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]} Probab=5.24 E-value=1.3e+02 Score=12.92 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 3689999988622642102 Q 537021.9.peg.9 12 TKRLEKIMNDFFSGGSRIT 30 (37) Q Consensus 12 tkrlekimndffsggsrit 30 (37) .+-|++-|..||.|+.--. T Consensus 63 R~~L~~qm~~Flf~~~~~~ 81 (91) T d1xs8a_ 63 RKLLEQEMVSFLFEGKDVH 81 (91) T ss_dssp HHHHHHHHHHHHTCCCSSC T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999999845898878 No 4 >d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein, pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]} Probab=5.06 E-value=67 Score=14.24 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=4.8 Q ss_pred EHHHHHHHHHHH Q ss_conf 336899999886 Q 537021.9.peg.9 11 QTKRLEKIMNDF 22 (37) Q Consensus 11 qtkrlekimndf 22 (37) .+..-+++|++. T Consensus 13 ds~~A~~~m~~L 24 (129) T d1kfia4 13 DSAGANKMMEHL 24 (129) T ss_dssp CHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 839999999999 No 5 >d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]} Probab=4.90 E-value=1.4e+02 Score=12.80 Aligned_cols=13 Identities=54% Similarity=0.874 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHCC Q ss_conf 6899999886226 Q 537021.9.peg.9 13 KRLEKIMNDFFSG 25 (37) Q Consensus 13 krlekimndffsg 25 (37) +-||-|..|||.- T Consensus 71 ~DLeSIIDdFF~e 83 (136) T d1nu9c2 71 KDLESIIEDFFIE 83 (136) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8899999999988 No 6 >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Probab=4.64 E-value=1.4e+02 Score=12.70 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 68999998862264210 Q 537021.9.peg.9 13 KRLEKIMNDFFSGGSRI 29 (37) Q Consensus 13 krlekimndffsggsri 29 (37) +..|++|++|.+|-..| T Consensus 77 ~eke~~m~~F~~g~~~i 93 (206) T d1gm5a4 77 EEKDRVMLEFAEGRYDI 93 (206) T ss_dssp SCSHHHHHHHTTTSSSB T ss_pred HHHHHHHHHHHCCCEEE T ss_conf 99999999997798789 No 7 >d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=4.14 E-value=84 Score=13.78 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=6.5 Q ss_pred EEHHHHHHHHHHH Q ss_conf 6336899999886 Q 537021.9.peg.9 10 VQTKRLEKIMNDF 22 (37) Q Consensus 10 vqtkrlekimndf 22 (37) |.+..-+++|.+. T Consensus 12 v~s~~A~~~m~~L 24 (141) T d3pmga4 12 VEAEGATKMMKDL 24 (141) T ss_dssp ECHHHHHHHHHHH T ss_pred CCHHHHHHHHHHH T ss_conf 8879999999999 No 8 >d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]} Probab=4.03 E-value=1.6e+02 Score=12.45 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.7 Q ss_pred EHHHHHHHHHHHHC Q ss_conf 33689999988622 Q 537021.9.peg.9 11 QTKRLEKIMNDFFS 24 (37) Q Consensus 11 qtkrlekimndffs 24 (37) +.+..|+|++|... T Consensus 2 s~~qvE~il~eli~ 15 (62) T d2otaa1 2 SNERVEKIIQDLLD 15 (62) T ss_dssp CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 67889999999999 No 9 >d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]} Probab=3.88 E-value=1.6e+02 Score=12.39 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=18.6 Q ss_pred EEHHHHHHHHHHHHC-CCCCCCCCCC Q ss_conf 633689999988622-6421027520 Q 537021.9.peg.9 10 VQTKRLEKIMNDFFS-GGSRITNNQF 34 (37) Q Consensus 10 vqtkrlekimndffs-ggsritnnqf 34 (37) -|-+.+..+-.+|.+ |--++|..|- T Consensus 14 ~ql~~la~ia~kyg~~g~i~~TtRQ~ 39 (65) T d1aopa1 14 KQWQAIDKFAGENTIYGSIRLTNRQT 39 (65) T ss_dssp HHHHHHHHHHHHHBSSCCEEECTTSC T ss_pred HHHHHHHHHHHHHCCCCCEEECCCCE T ss_conf 99999999999966798365637315 No 10 >d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]} Probab=3.67 E-value=1.7e+02 Score=12.37 Aligned_cols=16 Identities=44% Similarity=0.656 Sum_probs=11.4 Q ss_pred EEEEHHHHHHHHHHHH Q ss_conf 7763368999998862 Q 537021.9.peg.9 8 YLVQTKRLEKIMNDFF 23 (37) Q Consensus 8 ylvqtkrlekimndff 23 (37) .||.+..|.|||.|-. T Consensus 91 lLv~~dKl~kimQdDl 106 (111) T d1vyia_ 91 LLVEADKLSKIMQDDL 106 (111) T ss_dssp HHBCHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHH T ss_conf 3117799999999998 Done!