Query 537021.9.peg.993_1 Match_columns 52 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:15:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_993.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1yrt_A Bifunctional hemolysin 10.2 1.6E+02 0.0047 13.8 1.9 31 8-38 101-133 (147) 2 >3it5_A Protease LASA; metallo 9.3 1.2E+02 0.0034 14.5 0.9 10 2-11 24-33 (36) 3 >1ekg_A Frataxin; freidreich'S 6.3 1.7E+02 0.0049 13.7 0.6 14 5-18 53-66 (127) 4 >2fjl_A 1-phosphatidylinositol 5.9 1.5E+02 0.0046 13.9 0.2 23 13-35 32-54 (54) 5 >3iax_B Colicin-A; TOLB, TOLB 4.2 1.6E+02 0.0048 13.8 -0.6 31 5-39 58-88 (115) 6 >2kes_A Synphilin-1; synphilli 3.9 1.1E+02 0.0032 14.6 -1.7 18 7-24 23-40 (48) 7 >1mky_A Probable GTP-binding p 3.2 3E+02 0.009 12.5 0.0 26 14-39 6-36 (80) 8 >1mkf_A M3; decoy receptor, PS 3.2 4.3E+02 0.013 11.8 0.8 23 23-45 137-159 (172) 9 >2hjg_A GTP-binding protein EN 3.2 3.1E+02 0.0092 12.5 0.0 15 25-39 26-40 (83) 10 >1y08_A Hypothetical protein S 2.8 4.9E+02 0.014 11.6 0.7 10 9-18 1-10 (42) No 1 >>1yrt_A Bifunctional hemolysin-adenylate cyclase; CYAA, layse, toxin; 2.10A {Bordetella pertussis} PDB: 1yru_A 1zot_A* 2col_A (A:1-44,A:189-199,A:273-364) Probab=10.23 E-value=1.6e+02 Score=13.84 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=25.4 Q ss_pred CCCE--EEECHHHHHHHHHHHHHEEEEHHHHHH Q ss_conf 3423--898157999986123322312643411 Q 537021.9.peg.9 8 TKGK--IIINDQLQLLMENIIKIRYVTQEARSL 38 (52) Q Consensus 8 tkgk--iiindqlqllmeniikiryvtqearsl 38 (52) ..|+ +.-.+++|.+.+|+++--|+.-+-||. T Consensus 101 P~GE~~~LTK~dt~~fI~n~~~~GY~fY~NRsY 133 (147) T 1yrt_A 101 ATGESQMLTRGQLKEYIGQQRGEGYVFYENRAY 133 (147) T ss_dssp TTSCEEEECHHHHHHHHHHHHHTTBCCCCCTTT T ss_pred CCCCEEECCHHHHHHHHHHHHHCCCEEEECHHH T ss_conf 788578806899999999988579568616565 No 2 >>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* (A:135-170) Probab=9.29 E-value=1.2e+02 Score=14.47 Aligned_cols=10 Identities=50% Similarity=1.065 Sum_probs=7.3 Q ss_pred CEEEECCCCE Q ss_conf 4233123423 Q 537021.9.peg.9 2 AYFFNQTKGK 11 (52) Q Consensus 2 ayffnqtkgk 11 (52) -||+||..|. T Consensus 24 ~y~ynqsagt 33 (36) T 3it5_A 24 YYFYNQSAGT 33 (36) T ss_dssp SEEEETTTCC T ss_pred CCEECCCCCE T ss_conf 3143267873 No 3 >>1ekg_A Frataxin; freidreich'S ataxia, iron transport, mitochondrial, disease, metal transport; 1.80A {Homo sapiens} (A:) Probab=6.34 E-value=1.7e+02 Score=13.74 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=8.7 Q ss_pred EECCCCEEEECHHH Q ss_conf 31234238981579 Q 537021.9.peg.9 5 FNQTKGKIIINDQL 18 (52) Q Consensus 5 fnqtkgkiiindql 18 (52) |...+|++|||.|- T Consensus 53 f~~~~~~~VINkQ~ 66 (127) T 1ekg_A 53 LGGDLGTYVINKQT 66 (127) T ss_dssp CCTTCCEEEEEEEG T ss_pred ECCCCCEEEEECCC T ss_conf 86999789995898 No 4 >>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} (A:97-150) Probab=5.94 E-value=1.5e+02 Score=13.90 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=18.0 Q ss_pred EECHHHHHHHHHHHHHEEEEHHH Q ss_conf 98157999986123322312643 Q 537021.9.peg.9 13 IINDQLQLLMENIIKIRYVTQEA 35 (52) Q Consensus 13 iindqlqllmeniikiryvtqea 35 (52) +-.|.+.-|-+-+.|||-++|.| T Consensus 32 vaAds~Eel~dWv~KIREaaqta 54 (54) T 2fjl_A 32 VAADSQEELQDWVKKIREVAQTA 54 (54) T ss_dssp EEESSHHHHHHHHHHHHHHHTTC T ss_pred EEECCHHHHHHHHHHHHHHHHCC T ss_conf 87254999999999999998429 No 5 >>3iax_B Colicin-A; TOLB, TOLB BOX, complex, periplasm, protein transport, transport, antibiotic, antimicrobial, bacteriocin, cell membrane, membrane; 2.60A {Citrobacter freundii} (B:) Probab=4.24 E-value=1.6e+02 Score=13.80 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=21.9 Q ss_pred EECCCCEEEECHHHHHHHHHHHHHEEEEHHHHHHH Q ss_conf 31234238981579999861233223126434112 Q 537021.9.peg.9 5 FNQTKGKIIINDQLQLLMENIIKIRYVTQEARSLL 39 (52) Q Consensus 5 fnqtkgkiiindqlqllmeniikiryvtqearsll 39 (52) +|..-|++|||+.-|-.|..|+ .|.|..||. T Consensus 58 ynTPWG~ViIN~~G~P~MNGiV----MTeeNSslV 88 (115) T 3iax_B 58 YNTPWGKVIINAAGQPTMNGTV----MTADNSSMV 88 (115) T ss_pred CCCCCCEEEECCCCCCCCCCEE----EECCCCCCC T ss_conf 4477631788689971124358----853566212 No 6 >>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parkinson disease, phosphoprotein, polymorphism, UBL conjugation; NMR {Homo sapiens} (A:) Probab=3.93 E-value=1.1e+02 Score=14.60 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=12.0 Q ss_pred CCCCEEEECHHHHHHHHH Q ss_conf 234238981579999861 Q 537021.9.peg.9 7 QTKGKIIINDQLQLLMEN 24 (52) Q Consensus 7 qtkgkiiindqlqllmen 24 (52) ||...+-...|||.|||. T Consensus 23 Qt~~Rv~LQ~qLQ~lle~ 40 (48) T 2kes_A 23 QTVERVTLQNQLQQFLEA 40 (48) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 999999999999999743 No 7 >>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} (A:360-439) Probab=3.22 E-value=3e+02 Score=12.55 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=15.4 Q ss_pred ECHHHHHHHHH-----HHHHEEEEHHHHHHH Q ss_conf 81579999861-----233223126434112 Q 537021.9.peg.9 14 INDQLQLLMEN-----IIKIRYVTQEARSLL 39 (52) Q Consensus 14 indqlqllmen-----iikiryvtqearsll 39 (52) +|+-|+..++. -+||.|+||..-.-- T Consensus 6 LN~~l~~~~~~~pppk~~ki~Y~tQ~~~~PP 36 (80) T 1mky_A 6 INSALQKVLAFTNLPRGLKIFFGVQVDIKPP 36 (80) T ss_dssp HHHHHHHHHTTCCCSTTCCEEEEEEEETTTT T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCC T ss_conf 9999999997279998852599982799998 No 8 >>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} (A:211-382) Probab=3.21 E-value=4.3e+02 Score=11.83 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=18.8 Q ss_pred HHHHHHEEEEHHHHHHHCEEEEE Q ss_conf 61233223126434112465576 Q 537021.9.peg.9 23 ENIIKIRYVTQEARSLLGITLIK 45 (52) Q Consensus 23 eniikiryvtqearsllgitlik 45 (52) ||....||+......+.||++.- T Consensus 137 q~VL~~~~~~~~~~~lVGvsl~~ 159 (172) T 1mkf_A 137 QNVLQVRVAPTSMPNLVGVSLML 159 (172) T ss_dssp TTEEEEEECGGGGGGEEEEEEEE T ss_pred CEEEEEEECCCCCCCEEEEEEEE T ss_conf 14899998246676405699997 No 9 >>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} (A:354-436) Probab=3.15 E-value=3.1e+02 Score=12.50 Aligned_cols=15 Identities=33% Similarity=0.259 Sum_probs=9.3 Q ss_pred HHHHEEEEHHHHHHH Q ss_conf 233223126434112 Q 537021.9.peg.9 25 IIKIRYVTQEARSLL 39 (52) Q Consensus 25 iikiryvtqearsll 39 (52) -+||.|+||-.-.-. T Consensus 26 ~~Ki~Y~tQ~~~~PP 40 (83) T 2hjg_A 26 RLKIYYATQVSVKPP 40 (83) T ss_dssp ECCEEEEEEEETTTT T ss_pred EEEEEEEEECCCCCC T ss_conf 226998980799999 No 10 >>1y08_A Hypothetical protein SPY0861; cysteine proteinase, papain-like fold with major insertions, hydrolase; 1.93A {Streptococcus pyogenes} (A:108-149) Probab=2.78 E-value=4.9e+02 Score=11.60 Aligned_cols=10 Identities=40% Similarity=0.388 Sum_probs=6.4 Q ss_pred CCEEEECHHH Q ss_conf 4238981579 Q 537021.9.peg.9 9 KGKIIINDQL 18 (52) Q Consensus 9 kgkiiindql 18 (52) |-||+.|+|- T Consensus 1 kqki~f~~qe 10 (42) T 1y08_A 1 KQKINFNGEQ 10 (42) T ss_dssp GSEEEETTEE T ss_pred CCCCCCCCCH T ss_conf 5421457620 Done!