RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.993_1
         (52 letters)



>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
          Provisional.
          Length = 352

 Score = 24.4 bits (54), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 7/35 (20%)

Query: 9  KGKIIINDQLQLLMENII-------KIRYVTQEAR 36
          KG+I++N ++    E  I       +I YV Q+AR
Sbjct: 52 KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.329    0.143    0.375 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 797,206
Number of extensions: 34286
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 10
Length of query: 52
Length of database: 5,994,473
Length adjustment: 25
Effective length of query: 27
Effective length of database: 5,454,273
Effective search space: 147265371
Effective search space used: 147265371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)