The input sequences: 0 10 20 30 40 50 60 70 80 90 100 110 1 74774752 AAKLTIYAGRQVRVAGAPAYYTICELLHRHGF-AGATVLLGVDGTAHGRRRRA-RFFGRNVNVPLMIIAVG-TPAQVAVAAMELTAAL--------PNPLLTIERVRLCKR 2 74774753 WQKLMVHTAEATHHEGLPIHRALVHRLMQSETARGATALRGIWGFYGDHKPHGDKLFQLVRRVPVTTIIVD-TPQAIARSFDIVDELTN-------WHGLVTSEMVPAAVS 3 74774751 CLKLTAYFGERQ---GRFLADAMLDLFGSHNV-ATSVMLRGTTSFGPKHEFRCDQSLSLSEDPPVTVAAVD-IESKIRSLVDDVTAMT--------DRGLVTLERARLVTR 4 13424314 VRRLRIYIDENAMTGDRRVFEVLVERARTSGL-AGATVLRGVQGFGSSKTLHGGQPFDLAPNLPIIVEVVD-EEAALRVFINTLTVVD--------AVGLATLEKVEVVRY 5 2128917 AKILKIYLREGDKFEGELMYKHIMKILKREGI-SGATVYKGICGYGVRGVAEF-DIFRLSVNLPVIIECVD-IEENINRVLPKLYEVIK-------NNGLIIITDCHVYKG 6 7451868 TLRLRIYIGENDKWEGRPLYKVIVEKLREMGI-AGATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVVD-RGHNIEKVVNVIKPMIK--------DGMITVEPTIVLWV 7 7451869 MKLLKIYLGEKDKHSGKPLFEYLVKRAYELGM-KGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVD-EEERINLFLKEIDNID--------FDGLVFTADVNVVKM 8 9716152 ALRLTVYVGENDTWHHRPLYSEIVHRAHAAGL-AGASVFRGVEGFGASSIVHTTRLLSLSEDLPVAVVVVD-TEERVRGFLPLLDELV--------TEGLVTLDPCEVVRY 9 7451867 KKLLRIFTSEDESFEGKPFYKYLLERAKERGL-EGATVFRAIAGYGKTKEIRKHKLFQLRSSLPVVVEIID-EEEKIKRFLEEIKGK---------HNGLITLEDVEVIYL 10 7451866 EVLMRIYSSKE------ENLEDYINKLFEGGI-RGAVVLQGIAGFGKGREFHSEEIEVLSYELPVVIEVVE-DREKLLNFLKENRETF--------KNCYITFERVKVWE- 11 RAN00858 AKKLVIVTEK-------ILLKKIANIIEESGA-TGYTVLE-TGGKGSRNVRSTGQPNVSDTQANIKFEVLTPDRDMAENIADQVAVKFF-----LDFAGMIYICDAEVLYG 12 7470454 ANKLVIVTEK-------ILLKKIAKIIDESGA-KGYTVMN-TGGKGSRNVRSSGQPNTSDIEANIKFEILTETREMAEEIADRVAVKYF-----NDYAGIIYICSAEVLYG 13 RNPU04704 VKKIEIIANS-------FELAKILESLDKSGV-HSHAVIRNVVGKGLRGTTE---DLDMTMLDNVYILAFC-MPEELKRVVENIRPVLN------KFGGTCYVSDVMEIRS 14 RCK01544 MKRLDLIFSE-------RELDAIINTLEKANV-PGYTVMKHATGRGPERVVTE-DMEFTGLGSNAHVIVFC-EQELIDQMRDNIKSDLS------YYGGVAYISEATPL-- 15 7517658 MKKVEIIVRG-------EDLDFVLDLLEKAGV-KGYTIIHNLSGKGSHGFHEG-HLLFNEEDVLDMVISVM-PEEKVEAILEGLTPFFN------KHSGVVFVSDVQVSRL 16 5822483 MKLVTVIIKP-------FKLEDVREALSSIGI-QGLTVTE-VKGFGRQKGNA---EYSVNFLPKVKIDVAI-ADDQLDEVIDIVSKAAYTG---KIGDGKIFVAELQRVIR 17 1633299 MKKIDAIIKP-------FKLDDVREALAEVGI-TGMTVTE-VKGFGRQKGHT---EYMVDFLPKVKIEIVV-PDDIVDTCVDTIIRTAQTG---KIGDGKIFVFDVARVIR 18 6277249 MKEIIAFIRP-------SKMAATKKILDKLEI-PSVTAIP-VLGRGNQRGL----VLGMKYIPKRMLVIVA-KDGDVDRIVESIIQVNWTG---YIGDGKIFVCPTDDAVR 19 8572236 MYMIRAIIRP-------ERVSTVLSELLDAGF-PEVTKMA-VYGRGKQKGIKV-GEIYYDELPKEMLLIAV-KDEDKDDVIKVIMRNSRTGEKGAFGDGKIFVAPIEEVYT 20 13422686 MKLIIAVVKP-------FKLDEVREALVAAGV-EGLTVSE-VKGYGRQKGQT---EYQVNFVPKVKLEAVV-DDASAAKAVEAIKGAAATG---KIGDGKVFVLNVEEAVR 21 3885943 FYKVEAIVRP-------WRIQQVSSALLKIGI-RGVTVSD-VRGFGAQGGST---FSEDKFVAKVKMEIVV-KKDQVESVINTIIEGARTG---EIGDGKIFVLPVSDVIR 22 121331 MKMIKAIVRP-------DKVDDIVDSLENAGY-PAFTKIN-SVGRGKQGGLKV-GEIFYDELPKTILLIAV-NDDEVDEVVGLIKSSASTG---NFGDGKIFIQPITEAYT 23 8574401 MKKIEAIIRS-------DKLEDLKNTLTGSGLTKGMTVSQ-VLGHGTQRGFA---RIVPTLLAKVKVEIVV-KDLAVDEVVDTIRSAVATG---EVGDGKIFIVPIDDVIR 24 121342 MKEVIAIIRP-------NTVSKTVKALDVVGF-PAVTMAE-CFGRGKQKGY----GRFIKYIPKRLISIVV-DDADVPLVVGIISKVNRTG---SFGDGRIFVLPVEEAIR 25 75208121 MEELLAIVRK-------EKSYDVMKSLSEAEI--PYVSWT-VKGRGKEGGLR---KVLMPFLPKRAFLVFP-EEGKVNEAVNLIVESAHTG---AYGDGKVFLINQEVGV- PI vector for each site (*10^(-5)) site A R N D C Q E G H I L K M F P S T W Y V All: 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 1 20000 0 0 0 4000 0 4000 0 0 0 0 4000 48000 4000 0 0 4000 4000 0 8000 2 4000 4000 4000 0 0 4000 4000 0 0 0 12000 56000 0 0 0 0 0 0 8000 4000 3 0 16000 0 0 0 0 12000 0 0 4000 20000 40000 8000 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 28000 52000 0 4000 0 0 0 0 0 0 16000 5 0 20000 0 8000 0 0 16000 0 0 12000 4000 12000 4000 0 0 0 16000 0 0 8000 6 40000 0 0 0 0 0 0 0 0 44000 4000 0 0 0 0 0 0 0 0 12000 7 0 0 0 0 0 0 0 0 4000 44000 0 0 0 8000 0 0 0 0 32000 12000 8 8000 0 0 0 0 0 0 0 0 32000 8000 0 0 8000 0 4000 16000 0 0 24000 9 4000 36000 4000 4000 0 0 8000 20000 0 0 0 12000 0 0 0 12000 0 0 0 0 10 0 4000 0 0 0 0 36000 4000 0 0 0 16000 0 0 32000 8000 0 0 0 0 11 10000 10000 30000 10000 0 10000 10000 10000 0 0 0 10000 0 0 0 0 0 0 0 0 12 11111 0 0 44444 0 11111 11111 0 0 0 0 0 0 0 0 0 11111 0 0 11111 13 0 12500 0 0 0 0 0 0 12500 0 0 37500 12500 0 0 12500 12500 0 0 0 14 0 0 0 0 0 0 0 0 25000 0 0 0 0 25000 0 0 12500 25000 0 12500 15 12500 0 0 0 0 0 50000 12500 12500 0 0 0 0 0 0 12500 0 0 0 0 16 0 0 0 11111 0 0 0 77778 11111 0 0 0 0 0 0 0 0 0 0 0 17 11111 44444 0 0 0 0 11111 0 0 0 11111 22222 0 0 0 0 0 0 0 0 18 0 8000 4000 8000 0 0 16000 0 0 8000 4000 0 0 20000 24000 4000 0 4000 0 0 19 4000 8000 4000 4000 0 0 8000 0 0 4000 24000 28000 4000 4000 0 0 4000 0 0 4000 20 4000 0 0 0 0 0 0 0 4000 4000 40000 0 4000 8000 0 4000 0 0 20000 12000 21 8000 4000 0 24000 0 4000 20000 0 0 0 0 20000 0 0 0 12000 0 0 8000 0 22 16000 0 0 24000 0 4000 8000 0 4000 0 0 16000 0 4000 0 0 8000 0 8000 8000 23 0 0 0 0 0 0 0 0 0 36000 20000 0 4000 0 0 0 8000 0 4000 28000 24 8000 12000 0 0 4000 0 0 0 0 8000 20000 8000 8000 0 0 4000 0 0 0 28000 25 0 0 16000 12000 0 0 32000 0 8000 0 0 24000 0 0 0 8000 0 0 0 0 26 20000 20000 0 0 0 0 4000 0 0 16000 12000 8000 0 0 0 12000 8000 0 0 0 27 16000 0 0 0 0 0 0 0 0 8000 72000 0 0 4000 0 0 0 0 0 0 28 4000 8000 0 16000 0 0 16000 4000 8000 0 8000 8000 4000 4000 0 8000 4000 0 4000 4000 29 8000 8000 4000 4000 0 4000 32000 4000 0 0 0 20000 0 0 0 8000 4000 0 0 4000 30 28000 4000 0 0 0 0 4000 4000 8000 8000 8000 0 4000 0 0 24000 0 0 0 8000 31 0 0 8000 0 0 0 12000 80000 0 0 0 0 0 0 0 0 0 0 0 0 32 8000 0 0 0 0 0 0 0 0 32000 16000 0 4000 12000 0 0 4000 0 4000 20000 33 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 34 20833 12500 0 0 0 4167 8333 0 4167 0 0 16667 0 0 20833 4167 8333 0 0 0 35 8000 0 0 0 0 0 4000 72000 0 0 0 0 0 0 4000 8000 4000 0 0 0 36 32000 0 0 0 0 0 0 0 4000 0 8000 0 8000 4000 0 4000 0 0 20000 20000 37 4000 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4000 80000 0 0 12000 38 8000 0 0 0 0 0 0 0 0 4000 0 8000 8000 0 0 4000 0 0 0 68000 39 4000 0 0 0 0 0 0 0 0 16000 24000 0 12000 8000 0 12000 8000 4000 12000 0 40 4000 32000 8000 4000 0 8000 20000 0 4000 0 4000 8000 0 0 4000 0 4000 0 0 0 41 7692 0 15385 0 0 0 0 69231 7692 0 0 0 0 0 0 0 0 0 0 0 42 4000 0 0 0 4000 0 0 0 0 24000 4000 0 0 0 0 4000 12000 0 0 48000 43 8000 4000 0 4000 4000 4000 4000 8000 0 0 8000 16000 4000 4000 0 4000 8000 4000 8000 8000 44 0 0 0 0 0 0 0 96000 0 0 0 0 0 0 0 4000 0 0 0 0 45 0 24000 0 0 0 0 0 0 4000 0 0 16000 0 40000 0 0 4000 0 12000 0 46 4000 0 0 0 0 0 0 92000 0 0 0 0 0 0 0 0 0 0 4000 0 47 8000 12000 4000 0 0 0 0 4000 8000 0 4000 28000 0 0 8000 16000 4000 0 0 4000 48 0 16000 0 4000 0 36000 8000 8000 4000 0 0 12000 0 0 0 8000 4000 0 0 0 49 0 24000 8000 0 0 0 0 24000 8000 0 0 28000 0 0 0 8000 0 0 0 0 50 0 8000 0 0 0 0 12000 40000 4000 4000 0 4000 0 4000 0 0 8000 0 0 16000 51 4000 12000 4000 0 0 4000 0 0 8000 8000 16000 0 4000 12000 4000 4000 4000 0 4000 12000 52 8696 17391 0 0 0 0 13043 0 26087 0 0 8696 0 0 0 8696 17391 0 0 0 53 6250 6250 0 0 6250 0 6250 18750 0 0 0 6250 0 6250 0 18750 12500 0 0 12500 54 0 0 0 20000 0 0 10000 30000 10000 0 0 0 0 0 0 20000 10000 0 0 0 55 0 12500 0 25000 0 25000 6250 12500 6250 0 0 12500 0 0 0 0 0 0 0 0 56 0 4000 0 4000 0 0 20000 4000 0 8000 16000 4000 4000 12000 12000 4000 0 0 0 8000 57 0 4000 8000 0 0 0 8000 0 0 16000 20000 0 0 24000 0 4000 0 0 12000 4000 58 0 8000 0 8000 0 12000 4000 8000 0 0 4000 0 4000 16000 0 16000 4000 0 4000 12000 59 0 4000 4000 4000 0 0 0 0 0 4000 36000 0 12000 0 4000 8000 4000 0 8000 12000 60 4000 4000 12000 20000 0 0 4000 4000 0 0 0 12000 0 0 4000 24000 8000 0 0 4000 61 0 4000 0 0 0 0 20000 0 0 4000 8000 0 4000 20000 8000 4000 8000 0 12000 8000 62 0 4000 12000 20000 0 4000 8000 4000 0 8000 28000 0 0 0 0 4000 0 0 0 8000 63 16000 0 0 4000 0 0 0 0 0 0 28000 0 0 0 36000 4000 0 0 0 12000 64 0 0 16000 0 0 0 0 0 0 0 4000 40000 0 0 40000 0 0 0 0 0 65 4000 12000 0 4000 0 0 4000 0 0 20000 4000 0 0 0 0 0 4000 0 0 48000 66 8000 0 0 0 0 0 0 0 4000 16000 4000 28000 16000 0 0 0 8000 0 4000 12000 67 0 0 0 0 0 0 0 0 0 28000 20000 0 4000 12000 0 0 4000 0 0 32000 68 4000 0 0 4000 0 0 48000 0 0 16000 16000 0 0 0 0 4000 0 0 0 8000 69 16000 0 0 0 4000 0 0 0 0 44000 0 0 0 0 0 4000 0 0 0 32000 70 12000 0 0 0 0 0 0 0 0 4000 8000 0 0 12000 0 0 0 0 0 64000 71 4000 0 0 32000 8000 0 4000 4000 0 4000 0 0 4000 0 4000 0 8000 0 0 28000 72 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 73 4000 4000 4000 16000 0 0 20000 0 0 8000 0 16000 4000 0 8000 0 16000 0 0 0 74 0 12000 0 32000 0 4000 32000 4000 0 0 0 4000 0 0 12000 0 0 0 0 0 75 16000 0 0 20000 0 4000 40000 8000 4000 0 4000 0 0 0 0 4000 0 0 0 0 76 12000 8000 8000 12000 0 12000 8000 0 0 4000 4000 20000 8000 0 0 4000 0 0 0 0 77 12000 0 0 0 0 0 0 0 0 28000 16000 4000 0 0 0 0 0 0 0 40000 78 12000 12000 12000 28000 0 0 20000 0 0 0 4000 8000 0 0 4000 0 0 0 0 0 79 4000 20000 8000 4000 0 4000 20000 4000 0 0 8000 8000 0 0 0 8000 4000 0 0 8000 80 12000 0 0 0 4000 0 0 0 0 16000 4000 0 4000 20000 0 4000 0 0 0 36000 81 12000 4000 0 0 0 0 0 0 0 16000 24000 0 0 4000 0 0 0 0 0 40000 82 0 0 16000 32000 0 0 20000 8000 0 0 0 12000 4000 0 8000 0 0 0 0 0 83 4000 4000 8000 4000 0 4000 16000 4000 0 12000 12000 4000 0 0 0 4000 16000 0 0 8000 84 0 0 4000 0 0 0 0 0 0 56000 20000 0 0 0 0 0 0 0 0 20000 85 8000 12000 0 12000 0 0 0 0 0 12000 0 20000 4000 0 0 8000 16000 0 4000 4000 86 8000 8000 4000 0 0 4000 24000 8000 0 0 0 8000 0 0 12000 12000 0 0 0 12000 87 16000 0 4000 4000 0 0 0 4000 0 4000 8000 12000 8000 4000 0 8000 8000 0 0 20000 88 25000 0 8333 8333 0 0 0 0 0 8333 12500 0 0 12500 0 4167 8333 0 4167 8333 89 11111 16667 16667 0 0 5556 0 0 5556 0 0 11111 0 11111 0 11111 0 5556 5556 0 90 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100000 0 0 0 91 0 0 0 0 0 0 0 100000 0 0 0 0 0 0 0 0 0 0 0 0 92 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 93 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 94 6647 5945 2766 5656 702 1693 7927 8505 1734 8671 8423 7638 2436 3964 3055 4253 5120 413 2808 11643 95 16667 0 16667 0 0 0 16667 0 0 0 8333 25000 0 0 0 8333 0 0 8333 0 96 0 0 0 13333 0 0 0 0 0 33333 0 13333 0 20000 0 0 0 0 13333 6667 97 4167 0 4167 4167 0 0 0 41667 8333 0 0 4167 0 12500 4167 0 4167 4167 8333 0 98 8000 4000 16000 48000 0 0 4000 8000 4000 0 0 0 0 0 0 4000 0 0 0 4000 99 0 0 0 0 4000 0 0 92000 0 0 0 0 0 0 4000 0 0 0 0 0 100 0 4000 0 0 0 0 0 0 0 4000 32000 36000 8000 0 0 0 4000 0 4000 8000 101 8000 0 0 0 4000 0 0 0 0 56000 4000 0 0 0 0 0 0 0 0 28000 102 0 0 0 0 0 0 0 0 0 4000 0 0 0 48000 0 0 32000 0 16000 0 103 0 0 0 0 0 0 0 0 0 28000 20000 0 0 4000 0 4000 4000 0 0 40000 104 12000 0 0 4000 12000 4000 28000 0 0 4000 12000 0 0 4000 0 12000 4000 0 0 4000 105 0 12000 8000 28000 0 0 8000 0 0 0 0 4000 4000 0 32000 4000 0 0 0 0 106 16000 0 0 0 8000 4000 0 0 0 12000 4000 0 0 0 0 0 8000 0 0 48000 107 4000 8000 4000 8000 0 8000 36000 0 4000 4000 0 4000 4000 0 4000 4000 8000 0 0 0 108 4000 8000 0 12000 0 0 20000 0 0 0 8000 0 0 0 4000 0 0 0 0 44000 109 20000 0 0 0 4000 0 0 4000 0 8000 16000 0 0 0 0 4000 0 4000 4000 36000 110 0 16667 0 0 0 0 4167 0 0 20833 0 12500 0 0 0 0 4167 4167 20833 16667 111 0 40909 0 0 0 0 0 13636 0 0 9091 0 4545 0 0 9091 9091 0 9091 4545 The original LOG Likelyhood: -4957.016562141749091 The final LOG likelyhood: -4957.016562141749 site alfa LOG(likelihood) 1 A W C V A T M A K E A A V M M M M M M M F M M M M 1.20240 -60.50186736 2 A Q L R K L K L K V K N K K K K K K Y K Y K K K E 0.62347 -54.74453365 3 K K K R I R L R L L K K K R K L K E M L K M K E E 0.75354 -50.17640842 4 L L L L L L L L L M L L I L V V I I I I V I I V L 0.35959 -27.17305423 5 T M T R K R K T R R V V E D E T D I R I E K E I L 1.34856 -60.88703665 6 I V A I I I I V I I I I I L I V A A A A A A A A A 0.54212 -29.90049832 7 Y H Y Y Y Y Y Y F Y V V I I I I I F I V I I I I I 0.59215 -31.58073833 8 A T F I L I L V T S T T A F V I I I I V V V I I V 0.72330 -49.72098228 9 G A G D R G G G S S E E N S R K K R R K R R R R R 0.80988 -42.43614056 10 R E E E E E E E E K K K S E G P P P P P P P S P K 0.69292 -37.08635262 11 Q A R N G N K N D E - - - - - - - - - - - - - - - 1.00000 -25.80510626 12 V T Q A D D D D E - - - - - - - - - - - - - - - - 1.00000 -21.47269505 13 R H - M K K K T S - - - - - - - - - - - - - - - - 1.00000 -22.92395659 14 V H - T F W H W F - - - - - - - - - - - - - - - - 1.00000 -29.37113870 15 A E - G E E S H E - - - - - - - - - - - - - - - - 1.00000 -21.38964719 16 G G G D G G G H G - - - - - - - - - - - - - - - - 1.00000 -15.30065274 17 A L R R E R K R K - - - - - - - - - - - - - - - - 1.00000 -17.68859324 18 P P F R L P P P P E I I F R E F F S E F W D D N E 1.46358 -62.75711316 19 A I L V M L L L F N L L E E D K K K R K R K K T K 1.20865 -50.40758019 20 Y H A F Y Y F Y Y L L L L L L L L M V L I V L V S 0.74413 -44.80367206 21 Y R D E K K E S K E K K A D D E D A S D Q D E S Y 1.04678 -61.74728435 22 T A A V H V Y E Y D K K K A F D D A T E Q D D K D 1.51964 -65.00560189 23 I L M L I I L I L Y I I I I V V V T V V V I L T V 0.51085 -41.33540490 24 C V L V M V V V L I A A L I L R R K L R S V K V M 0.99485 -55.25716365 25 E H D E K E K H E N N K E N D E E K S E S D N K K 0.83831 -61.06065418 26 L R L R I K R R R K I I S T L A A I E A A S T A S 1.40195 -53.69900055 27 L L F A L L A A A L I I L L L L L L L L L L L L L 0.30812 -34.63145527 28 H M G R K R Y H K F E D D E E S A D L V L E T D S 2.10450 -69.63034627 29 R Q S T R E E A E E E E K K K S E K D A K N G V E 1.03387 -62.16907904 30 H S H S E M L A R G S S S A A I V L A A I A S V A 1.32744 -65.82093403 31 G E N G G G G G G G G G G N G G G E G G G G G G E 0.16178 -29.51774823 32 F T V L I I M L L I A A V V V I I I F V I Y L F I 0.72668 -50.36160527 33 - A - - - - - - - - - - - - - - - - - - - - T - - 0.00000 0.00000000 34 A R A A S A K A E R T K H P K Q T P P E R P K P - 1.26809 -60.30252890 35 G G T G G G G G G G G G S G G G G S E G G A G A P 0.20779 -33.35069935 36 A A S A A A V A A A Y Y H Y Y L M V V L V F M V Y 1.08016 -51.18559329 37 T T V T T T T S T V T T A T T T T T T T T T T T V 0.31766 -25.07925852 38 V A M V V V V V V V V V V V I V V A K V V K V M S 0.39865 -35.78857301 39 L L L L Y Y Y F F L L M I M I T T I M S S I S A W 1.36466 -62.75017599 40 L R R R K R R R R Q E N R K H E E P A E D N Q E T 1.10354 -56.93434229 41 G G G G G G G G A G - - N H N - - - - - - - - - - 0.23483 -17.46658775 42 V I T V I I I V I I T T V A L V V V V V V S V C V 0.47744 -40.24266603 43 D W T Q C Y M E A A G G V T S K K L Y K R V L F K 2.83513 -72.48243267 44 G G S G G G G G G G G G G G G G G G G G G G G G G 0.10451 -8.42817244 45 T F F F Y F F F Y F K K K R K F F R R Y F R H R R 0.67324 -44.05318319 46 A Y G G G G G G G G G G G G G G G G G G G G G G G 0.11659 -15.23718119 47 H G P S V K H A K K S S L P S R R N K R A K T K K 1.41483 -61.99987454 48 G D K S R K K S T G R R R E H Q Q Q Q Q Q Q Q Q E 1.26416 -50.10773340 49 R H H K G S R S K R N N G R G K K R K K G G R K G 0.77170 -60.21574611 50 R K E T V R H I E E V V T V F G G G G G G G G G G 0.71689 -48.23226685 51 R P F L A V M V I F R R T V H N H L I Q S L F Y L 1.98539 -69.79179479 52 R H R H E H H H R H S S E T E A T - K T T K A - R 1.26714 -47.59009378 53 A G C G F S R T K S T S - E G - - - V - - V - - - 1.89980 -45.16000443 54 - D D G - S S T H E G G - - - - - - - - - - - - - 1.00000 -26.55594994 55 R K Q Q D D D R K E Q Q - D H - - - G - - G - - - 1.28750 -37.90464033 56 F L S P I V F L L I P P D M L E E V E E F E R G K 1.71527 -63.88857262 57 F F L F F I F L F E N N L E L Y Y L I Y S I I R V 1.14252 -54.69967241 58 G Q S D R R S S Q V V T D F F S M G Y Q E F V F L 2.36347 -76.50953051 59 R L L L L L L L L L S S M T N V V M Y V D Y P I M 1.02699 -54.55752612 60 N V S A S S S S R S D D T G E N D K D N K D T K P 1.46047 -58.49081492 61 V R E P V T P E S Y T I M L E F F Y E F F E L Y F 1.66593 -63.86215507 62 N R D N N D D D S E Q E L G D L L I L V V L L I L 1.24903 -54.49044399 63 V V P L L L L L L L A A D S V P P P P P A P A P P 0.70029 -39.48853308 64 P P P P P P P P P P N N N N L K K K K K K K K K K 0.54394 -24.20829181 65 L V V I V I I V V V I I V A D V V R E V V T V R R 0.54787 -43.36181669 66 M T T I I I V A V V K K Y H M K K M M K K I K L A 1.28441 -56.85783226 67 I T V V I V L V V I F F I V V I I L L L M L V I F 0.53446 -43.30822707 68 I I A E E E E V E E E E L I I D E V L E E L E S L 0.69973 -50.92090309 69 A I A V C V I V I V V I A V S V I I I A I I I I V 0.47482 -45.89344192 70 V V V V V V V V I V L L F F V A V V A V V A V V F 0.41127 -35.97473380 71 G D D D D D D D D E T T C C M I V A V V V V V V P 1.08119 -46.24684121 72 - - - - - - - - - - P E - - - - - - - - - - - - - 0.00000 0.00000000 73 T T I E I R E T E D D T M E P A P K K D K N K D E 1.39114 -71.36100882 74 P P E E E G E E E R R R P Q E D D D D D K D D D E 0.68952 -45.13842980 75 A Q S A E H E E E E D E E E E D D G E A D D L A G 0.73104 -58.07916283 76 Q A K A N N R R K K M M E L K Q I D D S Q E A D K 1.71843 -66.87431121 77 V I I L I I I V I L A A L I V L V V K A V V V V V 0.47769 -39.79213318 78 A A R R N E N R K L E E K D E D D D D A E D D P N 1.00563 -53.15897450 79 V R S V R K L G R N N E R Q A E T R D K S E E L E 1.58176 -69.59262023 80 A S L F V V F F F F I I V M I V C I V A V V V V A 0.73243 -51.01836408 81 A F V I L V L L L L A A V R L I V V I V I V V V V 0.54374 -41.26373232 82 M D D N P N K P E K D D E D E D D E K E N G D G N 0.86198 -60.77078322 83 E I D T K V E L E E Q R N N G I T S V A T L T I L 1.80661 -65.15625912 84 L V V L L I I L I N V V I I L V I I I I I I I I I 0.38961 -32.21763241 85 T D T T Y K D D K R A A R K T S I I M K I K R S V 1.64042 -70.84726429 86 A E A V E P N E G E V V P S P K R Q R G E S S K E 1.56516 -66.69782240 87 A L M V V M I L K T K K V D F A T V N A G S A V S 1.65129 -61.09116559 88 L T T D I I D V - F F Y L L F A A N S A A A V N A 1.59262 -58.95847699 89 - N - - K K - - - - F F N S N Y Q W R A R S A R H 2.31988 -56.80330532 90 - - - - - - - - - - - - - - - T T T T T T T T T T 1.00000 -8.80963265 91 - - - - - - - - - - - - - - - G G G G G G G G G G 1.00000 -4.77735860 92 - - - - - - - - - - - - - - - - - - E - - - - - - 0.00000 0.00000000 93 - - - - - - - - - - - - - - - - - - K - - - - - - 0.00000 0.00000000 94 - - - - - - - - - - - - - - - - - - G - - - - - - 0.00000 0.00000000 95 - - - - - - - - - - L N - - - K K Y A K E N E S A 1.69878 -33.90903001 96 - - - - - - - - - - D D K Y K I I I F I I F V F Y 1.19923 -30.06829194 97 P W D A N - F T H K F Y F Y H G G G G G G G G G G 0.74385 -55.42547748 98 N H R V N D D E N N A A G G S D D D D D D D D D D 0.69819 -44.07493894 99 P G G G G G G G G C G G G G G G G G G G G G G G G 0.11746 -18.10911497 100 L L L L L M L L L Y M I T V V K K K K K K K K R K 0.79596 -38.46319917 101 L V V A I I V V I I I I C A V I I I I V I I I I V 0.39017 -36.30564525 102 T T T T I T F T T T Y Y Y Y F F F F F F F F F F F 0.48576 -29.08462582 103 I S L L I V T L L F I I V I V V V V V V V I I V L 0.46118 -40.49975885 104 E E E E T E A D E E C C S S S A F C A L L Q V L I 1.51626 -65.61638290 105 R M R K D P D P D R D S D E D E D P P N P P P P N 0.86049 -62.01371363 106 V V A V C T V C V V A A V A V L V T I V V I I V Q 0.59038 -53.40319865 107 R P R E H I N E E K E E M T Q Q A D E E S T D E E 1.18168 -68.41373346 108 L A L V V V V V V V V V E P V R R D E E D E D E V 0.80992 -47.50334092 109 C A V V Y L V V I W L L I L S V V A V A V A V A G 0.83384 -56.57951129 110 K V T R K W K R Y E Y Y R - R I I V Y V I Y I I V 1.18602 -55.64009841 111 R S R Y G V M Y L - G G S - L R R R T R R T R R - 1.00146 -49.51518227 best point: branch No: 23 distance from left point: 0.389108 left point: 33: right point: 38: The prediction for midpoint: 0 Root_MidPoint MKKLEIIIRE-------PELEYILNTLEKAGIEKGYTVYRNVVGFGKRRVVHGGDLFFLSLDANVVVEVVC-EEEKIDRVLDEIKPVLK-------HNGLIYISDVEVVRR The transition probability: Sequence Number: 0 (probability*10^(-4)) SN AA A R N D C Q E G H I L K M F P S T W Y V 1 M 1025 103 33 27 10 58 117 48 13 1172 888 225 3689 65 30 165 777 2 18 1534 2 K 9 251 28 5 0 37 64 3 3 2 2 9569 3 0 2 7 13 0 0 3 3 K 112 2387 75 20 2 168 179 19 35 328 959 4872 259 26 26 67 148 3 11 306 4 L 3 1 0 0 0 1 1 0 0 2148 7280 1 97 18 0 1 5 0 1 443 5 E 245 1234 306 1229 2 493 3440 151 90 32 35 2244 23 5 58 170 145 2 13 83 6 I 61 2 2 0 0 1 3 1 0 7338 316 4 117 11 1 5 45 0 2 2092 7 I 37 19 40 6 5 4 15 3 33 4419 453 18 159 777 5 36 81 9 2513 1368 8 I 75 5 3 1 2 2 7 1 1 4373 1643 9 285 85 3 12 155 1 6 3331 9 R 154 5595 343 93 3 99 162 1418 49 7 10 1112 8 2 20 826 74 2 5 18 10 E 458 95 163 763 1 212 5668 196 15 8 8 578 6 2 403 1227 159 0 4 33 11 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 P 659 537 247 764 6 246 1223 158 198 235 396 747 92 183 2836 540 374 18 149 392 19 E 459 521 223 614 5 512 1988 88 94 530 1401 1446 486 97 84 201 333 6 53 858 20 L 29 38 15 7 5 14 13 4 87 426 5096 17 192 1543 11 35 26 21 2124 297 21 E 155 212 438 2782 0 243 3838 78 36 11 10 1938 9 1 24 102 82 0 5 34 22 Y 394 581 680 925 9 270 943 150 1531 172 181 835 70 396 86 410 264 17 1815 269 23 I 9 2 1 0 0 1 2 0 0 6602 1136 2 102 17 1 2 18 0 2 2105 24 L 156 95 12 7 5 23 40 8 7 2350 3026 111 982 81 10 30 144 2 12 2900 25 N 65 108 3004 2382 0 132 2569 58 55 12 5 1360 4 1 9 127 84 0 7 17 26 T 962 1520 199 105 19 152 334 164 74 657 531 1205 239 52 120 897 1790 6 35 937 27 L 3 0 0 0 0 0 0 0 0 26 9933 0 17 5 0 0 0 0 0 14 28 E 440 1172 549 1461 7 397 2038 340 400 109 101 1759 51 34 130 377 341 6 90 199 29 K 136 707 169 501 0 425 3584 70 29 13 12 4127 12 1 22 75 81 0 3 32 30 A 3107 401 202 216 16 134 517 291 44 197 166 524 137 26 133 2628 793 2 21 445 31 G 1 0 0 0 0 0 0 9997 0 0 0 0 0 0 0 1 0 0 0 0 32 I 37 4 2 1 1 2 6 1 1 4382 1126 6 306 34 2 4 43 0 4 4039 33 E 0 0 0 0 23 0 8314 0 722 0 0 0 0 0 106 0 0 0 836 0 34 K 929 1558 297 245 5 445 813 149 278 51 51 2989 35 9 854 728 423 2 20 119 35 G 2 0 0 1 0 0 0 9996 0 0 0 0 0 0 0 1 0 0 0 0 36 Y 1880 141 137 112 30 56 193 112 262 496 502 149 349 787 79 502 320 17 2894 981 37 T 6 0 2 0 0 0 1 0 0 4 0 3 1 0 0 15 9962 0 0 5 38 V 18 0 0 0 1 0 2 0 0 536 29 1 11 2 0 0 9 0 0 9390 39 Y 211 90 95 43 20 29 74 31 125 1266 1369 91 532 1925 32 289 320 27 2184 1245 40 R 56 5361 111 85 1 654 446 37 332 10 20 2705 13 2 21 66 49 2 8 19 41 N 44 33 4726 203 1 13 44 4377 283 2 1 73 1 1 3 163 22 0 5 5 42 V 42 1 1 0 1 0 3 0 0 4331 203 3 74 8 1 3 64 0 1 5263 43 V 730 441 203 296 720 115 473 490 137 1042 985 530 283 475 181 471 588 52 363 1425 44 G 0 0 0 0 0 0 0 9999 0 0 0 0 0 0 0 0 0 0 0 0 45 F 75 1422 153 29 5 101 108 21 1859 126 297 1308 104 2099 24 145 81 22 1892 130 46 G 0 0 0 0 0 0 0 9999 0 0 0 0 0 0 0 0 0 0 0 0 47 K 688 1551 352 209 9 241 558 160 134 166 141 2465 75 21 722 1246 963 3 26 272 48 R 81 4003 149 95 1 1111 500 45 401 17 29 3267 21 4 30 115 92 2 12 29 49 R 51 6820 132 22 1 52 53 1357 36 3 6 1211 4 1 8 207 27 1 2 6 50 V 1057 509 146 154 7 177 886 552 83 843 247 728 178 50 34 323 1074 3 26 2923 51 V 434 286 127 108 26 90 221 87 369 1630 1584 316 451 970 78 227 467 18 536 1976 52 H 548 475 744 863 6 466 1533 138 1780 83 73 839 43 32 113 763 1245 2 112 143 53 G 952 792 410 606 32 190 872 1337 139 354 298 981 120 155 192 1141 731 12 128 556 54 G 844 263 516 460 23 71 379 3057 87 67 53 327 28 24 123 3056 454 5 37 127 55 D 159 122 691 5089 1 239 2182 470 370 11 11 344 6 3 31 153 68 1 21 29 56 L 512 340 123 229 13 153 536 88 74 1513 2222 472 557 281 247 217 434 8 90 1890 57 F 56 20 14 8 5 11 23 5 27 1095 2951 25 350 3951 8 40 59 9 420 924 58 F 450 941 206 221 31 177 444 185 311 814 1054 812 305 1188 129 370 425 53 850 1036 59 L 328 88 79 28 8 45 72 21 25 1543 3348 130 988 127 144 366 1056 3 30 1569 60 S 695 255 1132 1217 9 124 961 701 70 57 36 585 24 13 105 2935 940 2 29 109 61 L 567 165 88 83 20 69 201 72 61 1488 1870 232 532 715 515 405 844 10 217 1847 62 D 383 168 998 3677 3 275 2081 345 126 164 289 488 76 27 54 321 223 2 36 265 63 A 3217 89 39 58 11 61 157 45 20 446 2359 109 255 80 783 712 330 2 21 1206 64 N 218 289 2922 388 1 135 319 86 147 26 25 1881 9 4 2497 707 289 0 20 39 65 V 101 1 1 1 1 1 6 1 0 1898 94 3 40 6 1 2 30 0 1 7811 66 V 369 779 269 113 12 212 364 63 794 1350 869 1187 484 314 57 200 482 10 471 1600 67 V 22 1 1 0 1 0 3 0 0 3702 232 2 65 12 1 1 21 0 1 5933 68 E 184 29 38 435 0 191 7890 18 7 195 94 242 47 5 13 31 94 0 3 485 69 V 115 1 1 0 46 0 4 1 0 2546 91 2 43 6 1 7 41 0 1 7093 70 V 24 1 0 0 1 0 3 0 0 1083 347 2 48 536 1 2 13 0 11 7926 71 C 1041 166 420 1175 2721 65 778 349 65 294 183 212 87 43 54 738 408 8 84 1108 72 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 E 436 621 304 1228 3 451 3321 117 66 120 83 1913 58 10 264 276 487 1 13 228 74 E 42 27 41 1326 0 584 7703 13 9 1 2 188 2 0 23 16 13 0 1 8 75 E 36 7 30 1643 0 83 8061 13 4 1 1 87 1 0 4 10 10 0 1 8 76 K 452 1416 789 840 6 494 1416 216 185 189 187 2484 97 27 91 388 399 3 37 284 77 I 13 1 1 0 0 0 2 0 0 5354 187 2 60 8 0 1 21 0 1 4348 78 D 82 92 1879 4445 0 133 2247 81 50 8 6 744 4 1 13 118 65 0 8 21 79 R 229 3607 232 371 3 617 1151 143 151 39 48 2856 30 6 66 199 159 3 14 75 80 V 48 5 3 1 3 2 8 2 3 3148 807 8 348 1502 3 11 45 3 77 3973 81 L 74 11 1 1 2 4 5 1 1 1238 5516 7 234 37 3 5 23 1 3 2832 82 D 77 53 1038 5517 0 89 2356 58 31 5 4 527 3 1 79 95 45 0 5 15 83 E 590 573 906 1468 7 295 1960 613 139 148 90 1383 53 18 102 610 753 2 30 258 84 I 1 0 1 0 0 0 0 0 0 9098 292 1 39 5 0 0 8 0 1 554 85 K 318 2739 428 383 6 298 798 151 199 117 101 3220 60 32 77 359 447 6 79 181 86 P 717 408 302 880 4 238 1515 269 82 60 61 759 26 12 3326 806 369 2 20 144 87 V 1023 168 105 151 21 78 352 108 42 1848 1244 305 591 273 74 272 592 6 95 2652 88 L 227 40 22 18 12 16 51 19 20 2145 2386 55 454 1663 21 74 185 9 248 2337 89 K 522 1649 580 763 15 319 1142 461 332 192 175 2090 80 64 174 548 478 10 108 298 90 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 92 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 94 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 96 - 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 H 53 66 886 100 2 25 42 201 4300 16 20 60 7 302 8 262 48 8 3574 19 98 N 152 29 3336 3192 1 19 352 2147 28 4 2 113 2 1 6 540 59 0 6 11 99 G 1 0 0 0 0 0 0 9999 0 0 0 0 0 0 0 0 0 0 0 0 100 L 120 79 15 7 3 31 41 5 8 2007 3807 180 926 76 12 38 302 2 10 2333 101 I 8 0 1 0 1 0 1 0 0 6834 75 1 36 4 0 1 13 0 1 3023 102 Y 100 37 110 21 7 10 35 9 81 600 225 44 106 2272 17 314 1551 6 4075 382 103 I 15 2 1 0 1 1 2 0 0 4835 862 2 88 15 1 1 19 0 1 4154 104 S 1249 280 388 706 259 185 1347 297 61 281 224 602 99 48 158 2056 1171 4 46 542 105 D 39 6 153 8288 0 20 1198 28 9 1 1 39 1 0 164 36 12 0 2 5 106 V 230 2 1 1 99 1 7 2 0 1103 90 4 37 7 1 6 40 0 1 8367 107 E 185 255 647 1728 1 1174 4025 75 348 28 26 989 23 5 33 162 219 1 16 60 108 V 887 35 52 324 4 66 1491 37 8 1069 210 150 97 17 138 77 276 1 9 5052 109 V 68 7 4 2 3 3 9 2 3 3120 2293 10 283 134 3 11 64 3 50 3928 110 R 117 5558 110 42 4 174 192 43 173 147 160 2501 84 40 30 120 150 51 116 187 111 R 859 1567 162 84 19 143 216 1471 84 499 918 736 626 82 73 1094 490 13 88 776 The tree structure: +---------25:(75208121) +---------29 | | +---------19:(8572236) | +---------30 | +---------22:(121331) +---------28 | | +---------18:(6277249) | +---------31 | +---------24:(121342) +---------27 | | +---------23:(8574401) | +---------32 | | +---------15:(7517658) | | +---------35 | | | +---------13:(RNPU04704) | | +---------34 | | | | +---------14:(RCK01544) | | | +---------36 | | | | +---------12:(7470454) | | | +---------37 | | | +---------11:(RAN00858) | +---------33 | | +---------5:(2128917) | +---------38 | | +---------10:(7451866) | | +---------41 | | | +---------9:(7451867) | | +---------40 | | | +---------7:(7451869) | +---------39 | | +---------6:(7451868) | +---------42 | | +---------2:(74774753) | +---------43 | | +---------4:(13424314) | +---------44 | | +---------8:(9716152) | +---------45 | | +---------3:(74774751) | +---------46 | +---------1:(74774752) 26 +---------21:(3885943) | +---------20:(13422686) +---------47 | +---------17:(1633299) +---------48 +---------16:(5822483)