BLASTP 2.2.5 [Nov-16-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148264|gb|AAA24759.1| trp repressor binding protein
         (198 letters)

Database: astral_seq95_1.71.fa 
           13,006 sequences; 2,264,470 total letters

Searching...........................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinoc...    84   6e-15

>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA
           {Deinococcus radiodurans}
          Length = 201

 Score = 84.0 bits (206), Expect = 6e-15
 Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 12/173 (6%)

Query: 3   KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGG------KTQ 56
           K+ +++YS  G    M    A  A +  GAEV + +V ET P  + +            +
Sbjct: 4   KLAIVFYSSTGTGYAM-AQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMK 62

Query: 57  TAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGK-LASVFSSTG 115
             P ATP +L   +AI+F +PTRFG  + QMR F+D  GGLW+SG L  K  +++ S+  
Sbjct: 63  DVPEATPADLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQN 122

Query: 116 TGGGQEQTITSTWTTLAHHGMVIVPIAYAAQELFDVSQVRGGTPYGATTIAGG 168
             GGQE T+ + + T  H G V+ P  Y  + +F      GG PYGA+  A G
Sbjct: 123 VNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFK----SGGNPYGASVTANG 171


  Database: astral_seq95_1.71.fa
    Posted date:  Apr 2, 2007  3:57 PM
  Number of letters in database: 2,264,470
  Number of sequences in database:  13,006
  
Lambda     K      H
   0.315    0.132    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 952,560
Number of Sequences: 13006
Number of extensions: 40330
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 1
length of query: 198
length of database: 1,636,675,498
effective HSP length: 128
effective length of query: 70
effective length of database: 1,636,675,498
effective search space: 114567284860
effective search space used: 114567284860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)