BLASTP 2.2.5 [Nov-16-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15800764|ref|NP_286778.1| formate acetyltransferase 1 [Escherichia coli O157:H7 EDL933] (760 letters) Database: astral_seq95_1.71.fa 13,006 sequences; 2,264,470 total letters Searching...........................done Score E Sequences producing significant alignments: (bits) Value d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli} 1555 0.0 d1qhma_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli} 1256 0.0 d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium but... 187 3e-45 >d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli} Length = 759 Score = 1555 bits (4025), Expect = 0.0 Identities = 755/759 (99%), Positives = 757/759 (99%) Query: 2 SELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEG 61 SELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEG Sbjct: 1 SELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEG 60 Query: 62 VKLENRTHAPVDFDTAVASTITSHDAGYINKALEKVVGLQTEAPLKRALIPFGGIKMIEG 121 VKLENRTHAPVDFDTAVASTITSHDAGYINK LEK+VGLQTEAPLKRALIPFGGIKMIEG Sbjct: 61 VKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEG 120 Query: 122 SCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGD 181 SCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGD Sbjct: 121 SCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGD 180 Query: 182 YRRVALYGIDYLMKDKYAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKY 241 YRRVALYGIDYLMKDK AQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKY Sbjct: 181 YRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKY 240 Query: 242 GYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQE 301 GYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQE Sbjct: 241 GYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQE 300 Query: 302 AQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTL 361 AQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTL Sbjct: 301 AQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTL 360 Query: 362 YTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCV 421 YTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCV Sbjct: 361 YTMGPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCV 420 Query: 422 SPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDLLNYDEVMERMD 481 SPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGD+LNYDEVMERMD Sbjct: 421 SPMIVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMD 480 Query: 482 HFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIK 541 HFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIK Sbjct: 481 HFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIK 540 Query: 542 YAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPT 601 YAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPT Sbjct: 541 YAKVKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPT 600 Query: 602 QSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAK 661 QSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAK Sbjct: 601 QSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAK 660 Query: 662 DGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAME 721 DGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAME Sbjct: 661 DGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAME 720 Query: 722 NPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 760 NPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM Sbjct: 721 NPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQSM 759 >d1qhma_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli} Length = 612 Score = 1256 bits (3249), Expect = 0.0 Identities = 608/612 (99%), Positives = 610/612 (99%) Query: 5 NEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKL 64 NEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKL Sbjct: 1 NEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVKL 60 Query: 65 ENRTHAPVDFDTAVASTITSHDAGYINKALEKVVGLQTEAPLKRALIPFGGIKMIEGSCK 124 ENRTHAPVDFDTAVASTITSHDAGYINK LEK+VGLQTEAPLKRALIPFGGIKMIEGSCK Sbjct: 61 ENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQTEAPLKRALIPFGGIKMIEGSCK 120 Query: 125 AYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRR 184 AYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRR Sbjct: 121 AYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGLPDAYGRGRIIGDYRR 180 Query: 185 VALYGIDYLMKDKYAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYD 244 VALYGIDYLMKDK AQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYD Sbjct: 181 VALYGIDYLMKDKLAQFTSLQADLENGVNLEQTIRLREEIAEQHRALGQMKEMAAKYGYD 240 Query: 245 ISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE 304 ISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE Sbjct: 241 ISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQE 300 Query: 305 MVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTM 364 MVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTM Sbjct: 301 MVDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTM 360 Query: 365 GPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPM 424 GPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPM Sbjct: 361 GPSPEPNMTILWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPM 420 Query: 425 IVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFM 484 IVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGD+LNYDEVMERMDHFM Sbjct: 421 IVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFM 480 Query: 485 DWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAK 544 DWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAK Sbjct: 481 DWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAK 540 Query: 545 VKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSV 604 VKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSV Sbjct: 541 VKPIRDEDGLAIDFEIEGEYPQFGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSV 600 Query: 605 LTITSNVVYGKK 616 LTITSNVVYGKK Sbjct: 601 LTITSNVVYGKK 612 >d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium butyricum} Length = 786 Score = 187 bits (476), Expect = 3e-45 Identities = 170/603 (28%), Positives = 283/603 (46%), Gaps = 54/603 (8%) Query: 191 DYLMKDKYAQFTSLQADLENGVN-LEQTIRLREEIAEQHRALGQMKEM--AAKYGYDISG 247 D++ K+K+ S+ E + + + + +EIA+ + E+ AK +SG Sbjct: 196 DFIKKEKF--LNSVIISCEAAITYVNRYAKKAKEIADNTSDAKRKAELNEIAKICSKVSG 253 Query: 248 P-ATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRTSTFLDVYIERDLKAGKITEQEAQEMV 306 A + EA Q +F + NG ++S R ++ Y E D IT++ AQE++ Sbjct: 254 EGAKSFYEACQLFWFIHAIINIESNGHSISPARFDQYMYPYYEND---KNITDKFAQELI 310 Query: 307 DHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGLDGRTLVTKNSFRFLNTLYTMGP 366 D + +KL + +R + F G P++ +GG +G+ K S+ L + Sbjct: 311 DCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKDATNKVSYMALEAAVHV-K 369 Query: 367 SPEPNMTILWSEKLPLNFKKFAAKVSIDTSSL-QYENDDLMRPDF--------NNDDYAI 417 P+P++++ K P F AA+++ + L Y ND+++ P + DY I Sbjct: 370 LPQPSLSVRIWNKTPDEFLLRAAELTREGLGLPAYYNDEVIIPALVSRGLTLEDARDYGI 429 Query: 418 ACCVSPMIVGKQMQFF-GARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDLLNYDEV 476 CV P GK + A NLA+ + IN G D+ Q+GPK++ + ++ ++DE Sbjct: 430 IGCVEPQKPGKTEGWHDSAFFNLARIVELTINSGFDK--NKQIGPKTQNFE-EMKSFDEF 486 Query: 477 MERMDHFMDWLAKQYITALNIIHYMHDKYSYEASLMALHDRDVIRTMA----------CG 526 M+ M++ K A N I H + + L ++ D + + + G Sbjct: 487 MKAYKAQMEYFVKHMCCADNCIDIAHAERAPLPFLSSMVDNCIGKGKSLQDGGAEYNFSG 546 Query: 527 IAGLSVA--ADSLSAIKYA-----KVKPIRDEDGLAIDFEIEGEY-------PQFGNNDP 572 G+ VA DSL A+K K+ P + L DF+ E P+FGN+ Sbjct: 547 PQGVGVANIGDSLVAVKKIVFDENKITPSELKKTLNNDFKNSEEIQALLKNAPKFGNDID 606 Query: 573 RVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGP 632 VD+LA + + +++ K R + + NV +G TG TPDGR++G P Sbjct: 607 EVDNLAREGALVYCREVNKYTNPRGGNFQPGLYPSSINVYFGSLTGATPDGRKSGQPLAD 666 Query: 633 GANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDG 692 G +P G D G A+ SV+KL A +G + P+AL D+ + NL+ L+ Sbjct: 667 GVSPSRGCDVSGPTAACNSVSKLDHFIASNGTLFNQKFHPSALKGDNGL--MNLSSLIRS 724 Query: 693 YFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRFNSLTKEQQQDVI 752 YF + G H+ NV+++++LL A +NPEKY L +RV+GY+ +F SL K Q D+I Sbjct: 725 YFDQK-----GFHVQFNVIDKKILLAAQKNPEKYQDLIVRVAGYSAQFISLDKSIQNDII 779 Query: 753 TRT 755 RT Sbjct: 780 ART 782 Database: astral_seq95_1.71.fa Posted date: Apr 2, 2007 3:57 PM Number of letters in database: 2,264,470 Number of sequences in database: 13,006 Lambda K H 0.318 0.135 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,536,285 Number of Sequences: 13006 Number of extensions: 148695 Number of successful extensions: 405 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 400 Number of HSP's gapped (non-prelim): 3 length of query: 760 length of database: 1,636,675,498 effective HSP length: 144 effective length of query: 616 effective length of database: 1,636,675,498 effective search space: 1008192106768 effective search space used: 1008192106768 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 83 (36.6 bits)