No 1: Query=mol1A Sbjct=mol2A Z-score=6.0

DSSP  lLLLLlLLLLlLEEEEEELLllhhhhhhlhhhlllllllLHHHHHHHHHHHHHHLLLEEE
Query dKVYQmKSKPrGYCLIINNHnfakarekvpklhsirdrnGTHLDAGALTTTFEELHFEIK   60
ident            |    |                          |                
Sbjct .YTPVeEKEN.GRMIVIVAK...................KYEGDIKDFVDWKNQRGLRTE   39
DSSP  .LLLLlLLLL.LEEEEEELH...................HHHHHLHHHHHHHHHLLLEEE


DSSP  EEEL......LLHHHHHHHHHHHHHLLLlllllEEEEEELLEellEEEL..lllleeEHH
Query PHDD......CTVEQIYEILKIYQLMDHsnmdcFICCILSHGdkgIIYG..tdgqeaPIY  112
ident            |   |    |                                       
Sbjct VKVAediaspVTANAIQQFVKQEYEKEG..ndlTYVLLVGDH...KDIPakitpgikSDQ   94
DSSP  EEEHhhhlllLLHHHHHHHHHHHHHLLL..lleEEEEEELLL...LLLLleeelleeELH


DSSP  HHHHHhLLLLlhhhllllEEEEEELL..................................
Query ELTSQfTGLKcpslagkpKVFFIQAC..................................  138
ident        |                 |                                  
Sbjct VYGQI.VGND....hyneVFIGRFSCeskedlktqidrtihyernittedkwlgqalcia  149
DSSP  HHHLL.LLLL....llllLEEEEELLllhhhhhhhhhhhhhhhhlllllllllleeeeee


DSSP  ............................................................
Query ............................................................  138
ident                                                             
Sbjct saeggpsadngesdiqhenvianlltqygytkiikcydpgvtpkniidafnggislvnyt  209
DSSP  llllllllhhhllhhhhhhhhhhhhhhhllleeeeeelllllhhhhhhhhhhllleeeee


DSSP  .......................................LLLLLL...............
Query .......................................QGDNYQ...............  144
ident                                                             
Sbjct ghgsetawgtshfgtthvkqltnsnqlpfifdvacvngdFLFSMPcfaealmraqkdgkp  269
DSSP  lllllllllllllllllhhhlllllllleeeeellllllLLLLLLlhhhhhhhleellee


DSSP  ............................................................
Query ............................................................  144
ident                                                             
Sbjct tgtvaiiastidqywappmrgqdemneilcekhpnnikrtfggvtmngmfamvekykkdg  329
DSSP  lllleeeeelllllllhhhhhhhhhhhhhlllllllllllhhhhhhhhhhhhhhhhhhhh


DSSP  .............llllllll
Query .............kgipvetd  152
ident                      
Sbjct enmldtwtvfgdpsllvrtlv  350
DSSP  hhhhhheeeelllllllllll


No 2: Query=mol1A Sbjct=mol2A Z-score=5.0

DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct ytpveekengrmivivakkyegdikdfvdwknqrglrtevkvaediaspvtanaiqqfvk   60
DSSP  lllllllllleeeeeelhhhhhhlhhhhhhhhhllleeeeeehhhhlllllhhhhhhhhh


DSSP  ............................................................
Query ............................................................    0
ident                                                             
Sbjct qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked  120
DSSP  hhhhllllleeeeeeelllllllleeelleeelhhhhllllllllllleeeeellllhhh


DSSP  ...........lLLLLLLLllLLEEEEEELLLlhhhhhhlhhhllllllLLHHHHHHHHH
Query ...........dKVYQMKSkpRGYCLIINNHNfakarekvpklhsirdrNGTHLDAGALT   49
ident                       |  | |                                
Sbjct lktqidrtihyeRNITTEDkwLGQALCIASAE.........ggpsadngESDIQHENVIA  171
DSSP  hhhhhhhhhhhhHLLLLLLllLLEEEEEELLL.........lllllhhhLLHHHHHHHHH


DSSP  HHHHHLLL.EEEEEELLLhhHHHHHHHHHHHLlllllllEEEEEELLEELLEEELllllE
Query TTFEELHF.EIKPHDDCTveQIYEILKIYQLMdhsnmdcFICCILSHGDKGIIYGtdgqE  108
ident           |    |                              ||            
Sbjct NLLTQYGYtKIIKCYDPG..VTPKNIIDAFNG.....giSLVNYTGHGSETAWGT...sH  221
DSSP  HHHHHHLLlEEEEEELLL..LLHHHHHHHHHH.....llLEEEEELLLLLLLLLL...lL


DSSP  EEHHHhHHHHlllLLHHHlllLEEEEEELLL.............................
Query APIYElTSQFtglKCPSLagkPKVFFIQACQ.............................  139
ident         |                |  ||                              
Sbjct FGTTH.VKQL...TNSNQ...LPFIFDVACVngdflfsmpcfaealmraqkdgkptgtva  274
DSSP  LLLLL.HHHL...LLLLL...LLEEEEELLLllllllllllhhhhhhhleelleelllle


DSSP  ......................................................llLLLL
Query ......................................................gdNYQK  145
ident                                                         |   
Sbjct iiastidqywappmrgqdemneilcekhpnnikrtfggvtmngmfamvekykkdgeNMLD  334
DSSP  eeeelllllllhhhhhhhhhhhhhlllllllllllhhhhhhhhhhhhhhhhhhhhhHHHH


DSSP  .........lllllll
Query .........gipvetd  152
ident                 
Sbjct twtvfgdpsllvrtlv  350
DSSP  heeeelllllllllll


No 3: Query=mol1B Sbjct=mol2A Z-score=1.7

DSSP  ....................LLLL....................................
Query ....................TRYI....................................    4
ident                        |                                    
Sbjct ytpveekengrmivivakkyEGDIkdfvdwknqrglrtevkvaediaspvtanaiqqfvk   60
DSSP  lllllllllleeeeeelhhhHHHLhhhhhhhhhllleeeeeehhhhlllllhhhhhhhhh


DSSP  ............................................................
Query ............................................................    4
ident                                                             
Sbjct qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked  120
DSSP  hhhhllllleeeeeeelllllllleeelleeelhhhhllllllllllleeeeellllhhh


DSSP  .LLLL.......................................................
Query .PDEA.......................................................    8
ident                                                             
Sbjct lKTQIdrtihyernittedkwlgqalciasaeggpsadngesdiqhenvianlltqygyt  180
DSSP  hHHHHhhhhhhhhlllllllllleeeeeellllllllhhhllhhhhhhhhhhhhhhhlll


DSSP  ............................................................
Query ............................................................    8
ident                                                             
Sbjct kiikcydpgvtpkniidafnggislvnytghgsetawgtshfgtthvkqltnsnqlpfif  240
DSSP  eeeeeelllllhhhhhhhhhhllleeeeelllllllllllllllllhhhlllllllleee


DSSP  ...............................lEEEEElllllLLLLEellleEHHHHHHH
Query ...............................dFLLGMatvnnCVSYRnpaegTWYIQSLC   37
ident                                              |              
Sbjct dvacvngdflfsmpcfaealmraqkdgkptgtVAIIA...stIDQYW.....APPMRGQD  292
DSSP  eelllllllllllllhhhhhhhleelleelllLEEEE...elLLLLL.....LHHHHHHH


DSSP  HHHHHHHH.....hlLLHHHHHHHHHHHHH.HLLLlllllLLLL..EEEELLlLLLLLLL
Query QSLRERCP.....rgDDILTILTEVNYEVS.NKDDkknmgKQMP..QPTFTLrKKLVFPS   89
ident       |                                   |      |     ||   
Sbjct EMNEILCEkhpnnikRTFGGVTMNGMFAMVeKYKK...dgENMLdtWTVFGDpSLLVRTL  349
DSSP  HHHHHHLLlllllllLLHHHHHHHHHHHHHhHHHH...hhHHHHhhEEEELLlLLLLLLL


DSSP  L
Query D   90
ident  
Sbjct V  350
DSSP  L