No 1: Query=mol1A Sbjct=mol2A Z-score=5.3

DSSP  lhhhhllllllllllllllleeeeeEEEELL.........LLEEEEEEEE.EELLLLLL.
Query adsdiniktgttdigsnttvktgdlVTYDKE.........NGMHKKVFYS.FIDDKNHN.   49
ident                                                |            
Sbjct ........................gLDNELSlvdgqdrtlTVQQWDTFLNgVFPLDRNRl   36
DSSP  ........................lEEEEEEeellllleeEEEEEEEEEEeELLLLLLLl


DSSP  LEEEEEEEeEEELLLlLLLLllllleeeeeEEEEEEEEEELLllllleeeeeelllllll
Query KKLLVIRTkGTIAGQyRVYSeeganksglaWPSAFKVQLQLPdnevaqisdyyprnsidt  109
ident                                        |                    
Sbjct TREWFHSG.RAKYIV.AGPG.......adeFEGTLELGYQIG..................   69
DSSP  LEEEEEEE.EEEEEE.ELLL.......hhhLEEEEEEEEEEE..................


DSSP  leeeeeeeeeeeelleellllleelleeeeeeeeEEEE......................
Query keymstltygfngnvtgddtgkiggliganvsigHTLK......................  147
ident                                                             
Sbjct .........................fpwslgvgiNFSYttpniliddgditrppfglnsv  104
DSSP  .........................lleeeeeeeEEELllllleelllllllllllllle


DSSP  ......llllleeeeeellllLEEE.EEEEElleeelleeeellllllllllllllllll
Query ......yvqpdfktilesptdKKVG.WKVIFnnmvnqnwgpydrdswnpvygnqlfmktr  200
ident                        |    |                               
Sbjct itpnlfpgvsisadlgngpgiQEVAtFSVDV.............................  135
DSSP  elllllleeeeeeeeeellllEEEEeEEEEE.............................


DSSP  lllllhhhllllhhhllhhHHLLLLLLEEEEEEELLlllLLEEEEEEEEEEEEEeeeeee
Query ngsmkaadnfldpnkasslLSSGFSPDFATVITMDRkasKQQTNIDVIYERVRDdyqlhw  260
ident                       |         |                           
Sbjct ..................sGAEGGVAVSNAHGTVTG..aAGGVLLRPFARLIAS......  169
DSSP  ..................eLLEEEEEEEEEEEEELL..eELLLEEEEEEEEEEL......


DSSP  lllleeeeeeeEEEEEEEEE.EEEEElllleeel
Query tstnwkgtntkDKWTDRSSE.RYKIDwekeemtn  293
ident                                   
Sbjct ...........TGDSVTTYGePWNMN........  184
DSSP  ...........LLLEEEEELlLEELL........


No 2: Query=mol1A Sbjct=mol2A Z-score=4.3

DSSP  lhhhhllllllllllllllleeeeeeeeELLL................LEEEEEEE.EEE
Query adsdiniktgttdigsnttvktgdlvtyDKEN................GMHKKVFY.SFI   43
ident                                |                            
Sbjct ............................GLDNelslvdgqdrtltvqqWDTFLNGVfPLD   32
DSSP  ............................LEEEeeeeellllleeeeeeEEEEEEEElLLL


DSSP  LllllllEEEEEEEEEEELLLlLLLLLlllleeEEEEEeEEEEEEELLllLLLEeeeeel
Query DdknhnkKLLVIRTKGTIAGQyRVYSEeganksGLAWPsAFKVQLQLPdnEVAQisdyyp  103
ident         |         |    |                   |   |            
Sbjct R.....nRLTREWFHSGRAKY.IVAGP..gadeFEGTL.ELGYQIGFP..WSLG......   75
DSSP  L.....lLLLEEEEEEEEEEE.EEELL..lhhhLEEEE.EEEEEEELL..EEEE......


DSSP  llllllleeeeeeeeeeeelleellllleelleeeeeeeeeeeellllleeeeeelllLL
Query rnsidtkeymstltygfngnvtgddtgkiggliganvsightlkyvqpdfktilesptDK  163
ident                                                             
Sbjct ...........vginfsyttpniliddgditrppfglnsvitpnlfpgvsisadlgngPG  124
DSSP  ...........eeeeeelllllleelllllllllllllleelllllleeeeeeeeeelLL


DSSP  EEEE.EEEElleeelleeeelllllllllllllllllllllllhhhllllhhhllhhhHL
Query KVGW.KVIFnnmvnqnwgpydrdswnpvygnqlfmktrngsmkaadnfldpnkassllSS  222
ident                                                             
Sbjct IQEVaTFSV...........................................dvsgaeGG  141
DSSP  LEEEeEEEE...........................................eeelleEE


DSSP  LLLL.LEEEEEEellllllleEEEEEEEEEEEEEEeeeelllleeeeEEEEeEEEEE.EE
Query GFSP.DFATVITmdrkaskqqTNIDVIYERVRDDYqlhwtstnwkgtNTKDkWTDRS.SE  280
ident         ||                                           |      
Sbjct VAVSnAHGTVTG.......aaGGVLLRPFARLIAS............TGDS.VTTYGePW  181
DSSP  EEEEeEEEEELL.......eeLLLEEEEEEEEEEL............LLLE.EEEELlLE


DSSP  EEEeelllleeel
Query RYKidwekeemtn  293
ident              
Sbjct NMN..........  184
DSSP  ELL..........


No 3: Query=mol1A Sbjct=mol2A Z-score=3.3

DSSP  lhhhhllllllllllllllleEEEEEEEELlLLEEEEEEEE.EELLLL..........lL
Query adsdiniktgttdigsnttvkTGDLVTYDKeNGMHKKVFYS.FIDDKN..........hN   49
ident                         |   |        |                      
Sbjct ...................glDNELSLVDG.QDRTLTVQQWdTFLNGVfpldrnrltreW   40
DSSP  ...................leEEEEEEELL.LLLEEEEEEEeEEEEEEllllllllleeE


DSSP  LEEEEEEEEEEeLLLLllllllllleeeeeeeeEEEEEEE....................
Query KKLLVIRTKGTiAGQYrvyseeganksglawpsAFKVQLQ....................   89
ident                                   |   |                     
Sbjct FHSGRAKYIVA.GPGA................dEFEGTLElgyqigfpwslgvginfsyt   83
DSSP  EEEEEEEEEEE.LLLH................hHLEEEEEeeeeeelleeeeeeeeeell


DSSP  .......................................lllLLLLEEeeeellllllll
Query .......................................lpdNEVAQIsdyyprnsidtk  110
ident                                            |||              
Sbjct tpniliddgditrppfglnsvitpnlfpgvsisadlgngpgiQEVATF............  131
DSSP  lllleelllllllllllllleelllllleeeeeeeeeellllEEEEEE............


DSSP  eeeeeeeeeeeelleellllleelleeeeeeeeeeeellllleeeeeelllllEEEEEEe
Query eymstltygfngnvtgddtgkiggliganvsightlkyvqpdfktilesptdkKVGWKVi  170
ident                                                       |     
Sbjct .....................................................SVDVSG.  137
DSSP  .....................................................EEEEEL.


DSSP  elleeelleeeelllllllllllllllllllllllhhhllllhhhllhhhhllllLLEEE
Query fnnmvnqnwgpydrdswnpvygnqlfmktrngsmkaadnfldpnkassllssgfsPDFAT  230
ident                                                             
Sbjct .......................................................AEGGV  142
DSSP  .......................................................LEEEE


DSSP  EEE.ELLL......lLLLEEEEEEEEEeeeeeeeeeelllleeeeeeeeeeeEEEEEEEE
Query VIT.MDRK......aSKQQTNIDVIYErvrddyqlhwtstnwkgtntkdkwtDRSSERYK  283
ident                         |                              |    
Sbjct AVSnAHGTvtgaaggVLLRPFARLIAS.........................TGDSVTTY  177
DSSP  EEEeEEEEelleellLEEEEEEEEEEL.........................LLLEEEEE


DSSP  EELLlleeel
Query IDWEkeemtn  293
ident           
Sbjct GEPW...nmn  184
DSSP  LLLE...ell