HEADER BLOOD CLOTTING 06-MAR-09 3GIS TITLE Crystal Structure of Na-free Thrombin in Complex with Thrombomodulin COMPND MOL_ID: 3; COMPND 2 MOLECULE: Thrombomodulin; COMPND 3 CHAIN: X, Y, Z; COMPND 4 MUTATION: YES; COMPND 5 FRAGMENT: Thrombomodulin EGF domains 4-5-6, UNP residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.40 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN Y 58 REMARK 465 THR Y 59 REMARK 465 GLN Y 60 DBREF 3GIS Y 345 465 UNP P07204 TRBM_HUMAN 363 483 SEQRES 1 Y 35 LEU PHE CYS ASN GLN THR ALA CYS PRO ALA ASP CYS ASP SEQRES 2 Y 35 PRO ASN THR GLN ALA SER CYS GLU CYS PRO GLU GLY TYR SEQRES 3 Y 35 ILE LEU ASP ASP GLY PHE ILE CYS THR ATOM 1 N LEU Y 44 6.670 -4.460 22.226 1.00 54.93 ATOM 2 CA LEU Y 44 5.824 -5.467 22.854 1.00 55.31 ATOM 3 C LEU Y 44 5.533 -6.640 21.921 1.00 55.26 ATOM 4 O LEU Y 44 5.336 -6.468 20.716 1.00 54.82 ATOM 5 CB LEU Y 44 4.507 -4.838 23.321 1.00 55.53 ATOM 6 CG LEU Y 44 4.547 -4.155 24.690 1.00 56.46 ATOM 7 CD1 LEU Y 44 3.395 -3.173 24.826 1.00 56.59 ATOM 8 CD2 LEU Y 44 4.493 -5.218 25.777 1.00 56.04 ATOM 9 N PHE Y 45 5.527 -7.837 22.499 1.00 54.56 ATOM 10 CA PHE Y 45 5.248 -9.062 21.764 1.00 52.95 ATOM 11 C PHE Y 45 3.756 -9.375 21.909 1.00 52.90 ATOM 12 O PHE Y 45 3.101 -8.887 22.833 1.00 53.69 ATOM 13 CB PHE Y 45 6.084 -10.205 22.342 1.00 51.51 ATOM 14 CG PHE Y 45 5.768 -11.550 21.757 1.00 49.61 ATOM 15 CD1 PHE Y 45 6.041 -11.826 20.426 1.00 49.34 ATOM 16 CD2 PHE Y 45 5.195 -12.543 22.543 1.00 48.80 ATOM 17 CE1 PHE Y 45 5.746 -13.074 19.886 1.00 49.31 ATOM 18 CE2 PHE Y 45 4.898 -13.791 22.011 1.00 48.35 ATOM 19 CZ PHE Y 45 5.174 -14.057 20.680 1.00 48.28 ATOM 20 N CYS Y 46 3.235 -10.188 20.995 1.00 51.32 ATOM 21 CA CYS Y 46 1.827 -10.586 20.982 1.00 50.17 ATOM 22 C CYS Y 46 0.933 -9.570 20.287 1.00 48.30 ATOM 23 O CYS Y 46 0.690 -8.477 20.804 1.00 47.22 ATOM 24 CB CYS Y 46 1.284 -10.826 22.400 1.00 50.68 ATOM 25 SG CYS Y 46 -0.473 -11.346 22.406 1.00 51.67 ATOM 26 N ASN Y 47 0.446 -9.947 19.111 1.00 46.76 ATOM 27 CA ASN Y 47 -0.440 -9.095 18.331 1.00 45.41 ATOM 28 C ASN Y 47 -1.743 -9.842 18.087 1.00 43.67 ATOM 29 O ASN Y 47 -2.407 -9.626 17.078 1.00 44.75 ATOM 30 CB ASN Y 47 0.208 -8.731 16.990 1.00 45.80 ATOM 31 N GLN Y 48 -2.092 -10.735 19.010 1.00 41.94 ATOM 32 CA GLN Y 48 -3.324 -11.511 18.903 1.00 40.36 ATOM 33 C GLN Y 48 -4.469 -10.687 19.487 1.00 39.94 ATOM 34 O GLN Y 48 -4.236 -9.646 20.106 1.00 39.18 ATOM 35 CB GLN Y 48 -3.189 -12.833 19.667 1.00 39.30 ATOM 36 N THR Y 49 -5.702 -11.145 19.296 1.00 39.13 ATOM 37 CA THR Y 49 -6.849 -10.414 19.820 1.00 38.01 ATOM 38 C THR Y 49 -6.815 -10.381 21.340 1.00 36.70 ATOM 39 O THR Y 49 -7.474 -9.553 21.968 1.00 36.65 ATOM 40 CB THR Y 49 -8.173 -11.044 19.370 1.00 38.85 ATOM 41 OG1 THR Y 49 -8.192 -11.137 17.942 1.00 41.18 ATOM 42 CG2 THR Y 49 -9.345 -10.184 19.818 1.00 38.89 ATOM 43 N ALA Y 50 -6.037 -11.283 21.930 1.00 35.81 ATOM 44 CA ALA Y 50 -5.914 -11.350 23.380 1.00 35.69 ATOM 45 C ALA Y 50 -4.467 -11.610 23.800 1.00 36.08 ATOM 46 O ALA Y 50 -3.836 -12.554 23.326 1.00 36.09 ATOM 47 CB ALA Y 50 -6.823 -12.437 23.923 1.00 33.51 ATOM 48 N CYS Y 51 -3.944 -10.769 24.685 1.00 36.65 ATOM 49 CA CYS Y 51 -2.576 -10.924 25.158 1.00 39.72 ATOM 50 C CYS Y 51 -2.536 -10.995 26.668 1.00 39.69 ATOM 51 O CYS Y 51 -3.419 -10.478 27.341 1.00 40.22 ATOM 52 CB CYS Y 51 -1.709 -9.752 24.687 1.00 41.43 ATOM 53 SG CYS Y 51 -1.538 -9.670 22.875 1.00 48.88 ATOM 54 N PRO Y 52 -1.512 -11.653 27.225 1.00 40.99 ATOM 55 CA PRO Y 52 -1.408 -11.753 28.683 1.00 40.92 ATOM 56 C PRO Y 52 -1.142 -10.360 29.231 1.00 40.63 ATOM 57 O PRO Y 52 -0.338 -9.620 28.667 1.00 42.10 ATOM 58 CB PRO Y 52 -0.203 -12.671 28.889 1.00 40.47 ATOM 59 CG PRO Y 52 -0.153 -13.479 27.632 1.00 41.15 ATOM 60 CD PRO Y 52 -0.463 -12.453 26.570 1.00 41.63 ATOM 61 N ALA Y 53 -1.812 -9.999 30.318 1.00 40.23 ATOM 62 CA ALA Y 53 -1.607 -8.687 30.915 1.00 39.74 ATOM 63 C ALA Y 53 -0.249 -8.668 31.601 1.00 40.03 ATOM 64 O ALA Y 53 0.291 -9.715 31.954 1.00 39.03 ATOM 65 CB ALA Y 53 -2.705 -8.393 31.929 1.00 38.23 ATOM 66 N ASP Y 54 0.307 -7.477 31.781 1.00 42.12 ATOM 67 CA ASP Y 54 1.590 -7.344 32.448 1.00 43.17 ATOM 68 C ASP Y 54 1.359 -6.797 33.848 1.00 45.09 ATOM 69 O ASP Y 54 1.594 -5.619 34.120 1.00 45.28 ATOM 70 CB ASP Y 54 2.515 -6.419 31.657 1.00 42.30 ATOM 71 CG ASP Y 54 3.792 -6.088 32.412 1.00 43.65 ATOM 72 OD1 ASP Y 54 4.256 -6.939 33.205 1.00 41.61 ATOM 73 OD2 ASP Y 54 4.336 -4.979 32.204 1.00 46.01 ATOM 74 N CYS Y 55 0.881 -7.662 34.735 1.00 47.96 ATOM 75 CA CYS Y 55 0.617 -7.266 36.111 1.00 52.12 ATOM 76 C CYS Y 55 1.895 -7.381 36.942 1.00 54.40 ATOM 77 O CYS Y 55 2.768 -8.198 36.644 1.00 55.02 ATOM 78 CB CYS Y 55 -0.470 -8.153 36.718 1.00 52.45 ATOM 79 SG CYS Y 55 -1.937 -8.438 35.666 1.00 56.53 ATOM 80 N ASP Y 56 1.998 -6.555 37.980 1.00 57.04 ATOM 81 CA ASP Y 56 3.164 -6.554 38.860 1.00 59.38 ATOM 82 C ASP Y 56 2.816 -7.229 40.188 1.00 61.10 ATOM 83 O ASP Y 56 2.054 -6.683 40.995 1.00 61.51 ATOM 84 CB ASP Y 56 3.635 -5.115 39.115 1.00 59.01 ATOM 85 N PRO Y 57 3.380 -8.429 40.430 1.00 62.23 ATOM 86 CA PRO Y 57 3.163 -9.229 41.643 1.00 62.66 ATOM 87 C PRO Y 57 3.095 -8.428 42.945 1.00 63.03 ATOM 88 O PRO Y 57 2.057 -8.559 43.627 1.00 63.01 ATOM 89 CB PRO Y 57 4.342 -10.197 41.621 1.00 62.65 ATOM 90 CG PRO Y 57 4.524 -10.439 40.167 1.00 62.68 ATOM 91 CD PRO Y 57 4.438 -9.037 39.600 1.00 62.35 ATOM 92 N ALA Y 61 -1.633 -7.538 41.134 1.00 54.58 ATOM 93 CA ALA Y 61 -1.766 -6.071 41.359 1.00 54.63 ATOM 94 C ALA Y 61 -1.947 -5.302 40.044 1.00 53.50 ATOM 95 O ALA Y 61 -2.445 -5.852 39.058 1.00 53.25 ATOM 96 CB ALA Y 61 -0.545 -5.551 42.121 1.00 55.06 ATOM 97 N SER Y 62 -1.533 -4.036 40.044 1.00 52.12 ATOM 98 CA SER Y 62 -1.656 -3.148 38.887 1.00 51.12 ATOM 99 C SER Y 62 -1.226 -3.754 37.556 1.00 50.00 ATOM 100 O SER Y 62 -0.038 -3.947 37.309 1.00 51.15 ATOM 101 CB SER Y 62 -0.857 -1.872 39.143 1.00 50.62 ATOM 102 OG SER Y 62 -1.251 -1.277 40.368 1.00 52.18 ATOM 103 N CYS Y 63 -2.197 -4.025 36.690 1.00 47.84 ATOM 104 CA CYS Y 63 -1.915 -4.614 35.386 1.00 46.05 ATOM 105 C CYS Y 63 -1.859 -3.552 34.300 1.00 43.32 ATOM 106 O CYS Y 63 -2.521 -2.520 34.392 1.00 43.56 ATOM 107 CB CYS Y 63 -2.989 -5.639 35.014 1.00 47.95 ATOM 108 SG CYS Y 63 -3.267 -6.989 36.208 1.00 53.13 ATOM 109 N GLU Y 64 -1.070 -3.816 33.265 1.00 40.39 ATOM 110 CA GLU Y 64 -0.931 -2.889 32.151 1.00 36.33 ATOM 111 C GLU Y 64 -1.379 -3.573 30.867 1.00 33.82 ATOM 112 O GLU Y 64 -1.304 -4.795 30.745 1.00 32.60 ATOM 113 CB GLU Y 64 0.524 -2.448 32.015 1.00 37.19 ATOM 114 CG GLU Y 64 1.084 -1.777 33.258 1.00 40.38 ATOM 115 CD GLU Y 64 0.524 -0.385 33.477 1.00 43.07 ATOM 116 OE1 GLU Y 64 0.811 0.215 34.540 1.00 44.17 ATOM 117 OE2 GLU Y 64 -0.197 0.112 32.584 1.00 45.57 ATOM 118 N CYS Y 65 -1.863 -2.782 29.918 1.00 30.64 ATOM 119 CA CYS Y 65 -2.302 -3.316 28.637 1.00 29.67 ATOM 120 C CYS Y 65 -1.833 -2.390 27.535 1.00 28.77 ATOM 121 O CYS Y 65 -1.809 -1.172 27.706 1.00 29.78 ATOM 122 CB CYS Y 65 -3.831 -3.428 28.561 1.00 29.30 ATOM 123 SG CYS Y 65 -4.575 -4.814 29.472 1.00 29.47 ATOM 124 N PRO Y 66 -1.437 -2.952 26.388 1.00 27.66 ATOM 125 CA PRO Y 66 -0.992 -2.057 25.324 1.00 26.15 ATOM 126 C PRO Y 66 -2.181 -1.250 24.835 1.00 24.71 ATOM 127 O PRO Y 66 -3.326 -1.643 25.042 1.00 23.63 ATOM 128 CB PRO Y 66 -0.435 -3.017 24.275 1.00 26.18 ATOM 129 CG PRO Y 66 -1.194 -4.287 24.523 1.00 26.62 ATOM 130 CD PRO Y 66 -1.241 -4.364 26.018 1.00 27.32 ATOM 131 N GLU Y 67 -1.912 -0.114 24.208 1.00 24.39 ATOM 132 CA GLU Y 67 -2.980 0.735 23.699 1.00 24.33 ATOM 133 C GLU Y 67 -3.835 -0.066 22.719 1.00 23.78 ATOM 134 O GLU Y 67 -3.317 -0.886 21.960 1.00 23.04 ATOM 135 CB GLU Y 67 -2.388 1.972 23.007 1.00 25.20 ATOM 136 N GLY Y 68 -5.145 0.164 22.745 1.00 23.56 ATOM 137 CA GLY Y 68 -6.034 -0.561 21.854 1.00 21.70 ATOM 138 C GLY Y 68 -6.585 -1.824 22.491 1.00 21.08 ATOM 139 O GLY Y 68 -7.419 -2.516 21.906 1.00 20.83 ATOM 140 N TYR Y 69 -6.096 -2.139 23.686 1.00 20.40 ATOM 141 CA TYR Y 69 -6.569 -3.306 24.414 1.00 22.29 ATOM 142 C TYR Y 69 -7.174 -2.828 25.725 1.00 23.54 ATOM 143 O TYR Y 69 -6.969 -1.680 26.132 1.00 24.24 ATOM 144 CB TYR Y 69 -5.430 -4.282 24.721 1.00 21.90 ATOM 145 CG TYR Y 69 -4.875 -5.000 23.519 1.00 22.89 ATOM 146 CD1 TYR Y 69 -4.032 -4.349 22.619 1.00 22.67 ATOM 147 CD2 TYR Y 69 -5.209 -6.331 23.264 1.00 22.20 ATOM 148 CE1 TYR Y 69 -3.535 -5.004 21.492 1.00 21.43 ATOM 149 CE2 TYR Y 69 -4.715 -6.997 22.139 1.00 22.22 ATOM 150 CZ TYR Y 69 -3.881 -6.323 21.256 1.00 22.13 ATOM 151 OH TYR Y 69 -3.416 -6.957 20.125 1.00 24.98 ATOM 152 N ILE Y 70 -7.916 -3.709 26.385 1.00 23.45 ATOM 153 CA ILE Y 70 -8.533 -3.361 27.648 1.00 25.19 ATOM 154 C ILE Y 70 -8.457 -4.572 28.579 1.00 24.06 ATOM 155 O ILE Y 70 -8.731 -5.695 28.161 1.00 24.97 ATOM 156 CB ILE Y 70 -10.008 -2.887 27.413 1.00 27.64 ATOM 157 CG1 ILE Y 70 -10.567 -2.239 28.679 1.00 30.60 ATOM 158 CG2 ILE Y 70 -10.890 -4.049 27.005 1.00 27.28 ATOM 159 CD1 ILE Y 70 -11.858 -1.478 28.438 1.00 30.50 ATOM 160 N LEU Y 71 -8.040 -4.347 29.822 1.00 22.71 ATOM 161 CA LEU Y 71 -7.937 -5.422 30.803 1.00 23.48 ATOM 162 C LEU Y 71 -9.264 -6.165 30.880 1.00 25.17 ATOM 163 O LEU Y 71 -10.328 -5.548 30.955 1.00 24.98 ATOM 164 CB LEU Y 71 -7.598 -4.861 32.181 1.00 23.15 ATOM 165 CG LEU Y 71 -7.332 -5.918 33.253 1.00 23.27 ATOM 166 CD1 LEU Y 71 -6.146 -6.776 32.807 1.00 23.70 ATOM 167 CD2 LEU Y 71 -7.035 -5.255 34.597 1.00 21.31 ATOM 168 N ASP Y 72 -9.195 -7.491 30.869 1.00 26.00 ATOM 169 CA ASP Y 72 -10.389 -8.328 30.906 1.00 26.76 ATOM 170 C ASP Y 72 -10.220 -9.393 31.981 1.00 27.17 ATOM 171 O ASP Y 72 -9.142 -9.545 32.550 1.00 26.46 ATOM 172 CB ASP Y 72 -10.581 -8.994 29.535 1.00 27.14 ATOM 173 CG ASP Y 72 -11.980 -9.549 29.332 1.00 29.03 ATOM 174 OD1 ASP Y 72 -12.279 -10.025 28.212 1.00 31.12 ATOM 175 OD2 ASP Y 72 -12.783 -9.513 30.284 1.00 31.89 ATOM 176 N ASP Y 73 -11.295 -10.120 32.256 1.00 28.24 ATOM 177 CA ASP Y 73 -11.284 -11.188 33.246 1.00 30.43 ATOM 178 C ASP Y 73 -10.159 -12.160 32.974 1.00 31.03 ATOM 179 O ASP Y 73 -9.953 -12.581 31.834 1.00 31.36 ATOM 180 CB ASP Y 73 -12.590 -11.978 33.185 1.00 31.92 ATOM 181 CG ASP Y 73 -13.654 -11.424 34.086 1.00 33.97 ATOM 182 OD1 ASP Y 73 -14.820 -11.839 33.916 1.00 36.81 ATOM 183 OD2 ASP Y 73 -13.331 -10.594 34.966 1.00 33.14 ATOM 184 N GLY Y 74 -9.436 -12.530 34.020 1.00 31.89 ATOM 185 CA GLY Y 74 -8.370 -13.498 33.847 1.00 33.11 ATOM 186 C GLY Y 74 -6.993 -13.021 33.448 1.00 33.76 ATOM 187 O GLY Y 74 -6.285 -13.712 32.713 1.00 34.29 ATOM 188 N PHE Y 75 -6.608 -11.843 33.922 1.00 35.01 ATOM 189 CA PHE Y 75 -5.291 -11.299 33.626 1.00 35.63 ATOM 190 C PHE Y 75 -4.967 -11.244 32.140 1.00 33.87 ATOM 191 O PHE Y 75 -3.831 -11.493 31.747 1.00 36.34 ATOM 192 CB PHE Y 75 -4.220 -12.137 34.322 1.00 37.73 ATOM 193 CG PHE Y 75 -4.659 -12.710 35.630 1.00 40.17 ATOM 194 CD1 PHE Y 75 -4.958 -11.878 36.706 1.00 40.58 ATOM 195 CD2 PHE Y 75 -4.774 -14.089 35.789 1.00 41.51 ATOM 196 CE1 PHE Y 75 -5.367 -12.415 37.929 1.00 42.53 ATOM 197 CE2 PHE Y 75 -5.183 -14.640 37.007 1.00 43.44 ATOM 198 CZ PHE Y 75 -5.480 -13.800 38.080 1.00 43.22 ATOM 199 N ILE Y 76 -5.948 -10.939 31.304 1.00 31.77 ATOM 200 CA ILE Y 76 -5.669 -10.844 29.882 1.00 31.25 ATOM 201 C ILE Y 76 -6.117 -9.485 29.370 1.00 30.15 ATOM 202 O ILE Y 76 -6.945 -8.826 29.988 1.00 31.46 ATOM 203 CB ILE Y 76 -6.398 -11.937 29.056 1.00 30.38 ATOM 204 CG1 ILE Y 76 -7.900 -11.662 29.035 1.00 31.65 ATOM 205 CG2 ILE Y 76 -6.117 -13.305 29.635 1.00 29.82 ATOM 206 CD1 ILE Y 76 -8.682 -12.518 28.043 1.00 32.93 ATOM 207 N CYS Y 77 -5.546 -9.058 28.252 1.00 29.32 ATOM 208 CA CYS Y 77 -5.924 -7.799 27.636 1.00 27.71 ATOM 209 C CYS Y 77 -6.665 -8.207 26.368 1.00 27.71 ATOM 210 O CYS Y 77 -6.146 -8.976 25.556 1.00 27.09 ATOM 211 CB CYS Y 77 -4.689 -6.967 27.275 1.00 28.40 ATOM 212 SG CYS Y 77 -3.657 -6.456 28.688 1.00 32.00 ATOM 213 N THR Y 78 -7.886 -7.715 26.208 1.00 26.91 ATOM 214 CA THR Y 78 -8.678 -8.046 25.035 1.00 25.46 ATOM 215 C THR Y 78 -8.728 -6.867 24.086 1.00 24.72 ATOM 216 O THR Y 78 -8.857 -5.722 24.518 1.00 24.07 ATOM 217 CB THR Y 78 -10.113 -8.425 25.423 1.00 25.71 ATOM 218 OG1 THR Y 78 -10.095 -9.652 26.162 1.00 27.16 ATOM 219 CG2 THR Y 78 -10.970 -8.603 24.178 1.00 26.87 TER