HEADER OXIDOREDUCTASE 18-MAY-11 3S3A TITLE Structure of Thermus thermophilus cytochrome ba3 oxidase 120s after TITLE 2 Xe depressurization COMPND MOL_ID: 3; COMPND 2 MOLECULE: Cytochrome c oxidase polypeptide 2A; COMPND 3 CHAIN: C; COMPND 4 EC: 1.9.3.1; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 4.25 ANGSTORMS DBREF 3S3A C 2 34 UNP P82543 COXA_THET8 2 34 SEQRES 1 C 33 GLU GLU LYS PRO LYS GLY ALA LEU ALA VAL ILE LEU VAL SEQRES 2 C 33 LEU THR LEU THR ILE LEU VAL PHE TRP LEU GLY VAL TYR SEQRES 3 C 33 ALA VAL PHE PHE ALA ARG GLY ATOM 1 N GLU C 1 0.712 5.544 -15.483 1.00123.02 ATOM 2 CA GLU C 1 0.367 5.270 -16.943 1.00123.02 ATOM 3 C GLU C 1 0.190 6.553 -17.796 1.00123.02 ATOM 4 O GLU C 1 1.186 7.125 -18.278 1.00123.02 ATOM 5 CB GLU C 1 -0.878 4.352 -17.069 1.00123.02 ATOM 6 CG GLU C 1 -2.146 4.896 -16.366 1.00123.02 ATOM 7 CD GLU C 1 -3.433 4.239 -16.883 1.00123.02 ATOM 8 OE1 GLU C 1 -3.594 4.121 -18.121 1.00123.02 ATOM 9 OE2 GLU C 1 -4.281 3.844 -16.046 1.00123.02 ATOM 10 N GLU C 2 -1.059 7.005 -17.983 1.00123.02 ATOM 11 CA GLU C 2 -1.303 8.162 -18.841 1.00123.02 ATOM 12 C GLU C 2 -2.332 9.180 -18.332 1.00123.02 ATOM 13 O GLU C 2 -2.830 9.067 -17.209 1.00123.02 ATOM 14 CB GLU C 2 -1.614 7.723 -20.286 1.00123.02 ATOM 15 CG GLU C 2 -1.042 8.685 -21.334 1.00123.02 ATOM 16 CD GLU C 2 0.218 9.404 -20.827 1.00123.02 ATOM 17 OE1 GLU C 2 1.338 8.861 -20.998 1.00123.02 ATOM 18 OE2 GLU C 2 0.088 10.516 -20.245 1.00123.02 ATOM 19 N LYS C 3 -2.599 10.180 -19.186 1.00123.02 ATOM 20 CA LYS C 3 -3.540 11.285 -18.966 1.00123.02 ATOM 21 C LYS C 3 -4.755 10.872 -18.118 1.00123.02 ATOM 22 O LYS C 3 -5.412 9.861 -18.413 1.00123.02 ATOM 23 CB LYS C 3 -3.966 11.868 -20.338 1.00123.02 ATOM 24 CG LYS C 3 -4.796 13.180 -20.310 1.00123.02 ATOM 25 CD LYS C 3 -4.862 13.879 -21.688 1.00123.02 ATOM 26 CE LYS C 3 -5.715 13.107 -22.696 1.00123.02 ATOM 27 NZ LYS C 3 -6.063 13.892 -23.920 1.00123.02 ATOM 28 N PRO C 4 -5.041 11.642 -17.047 1.00123.02 ATOM 29 CA PRO C 4 -6.215 11.367 -16.224 1.00123.02 ATOM 30 C PRO C 4 -7.475 11.732 -16.999 1.00123.02 ATOM 31 O PRO C 4 -8.240 12.599 -16.585 1.00123.02 ATOM 32 CB PRO C 4 -6.023 12.286 -15.009 1.00123.02 ATOM 33 CG PRO C 4 -4.615 12.818 -15.114 1.00123.02 ATOM 34 CD PRO C 4 -4.286 12.809 -16.554 1.00123.02 ATOM 35 N LYS C 5 -7.663 11.066 -18.132 1.00123.02 ATOM 36 CA LYS C 5 -8.774 11.338 -19.038 1.00123.02 ATOM 37 C LYS C 5 -10.123 11.282 -18.315 1.00123.02 ATOM 38 O LYS C 5 -10.997 12.118 -18.562 1.00123.02 ATOM 39 CB LYS C 5 -8.765 10.335 -20.194 1.00123.02 ATOM 40 CG LYS C 5 -7.599 10.486 -21.183 1.00123.02 ATOM 41 CD LYS C 5 -7.768 9.537 -22.376 1.00123.02 ATOM 42 CE LYS C 5 -8.973 9.923 -23.259 1.00123.02 ATOM 43 NZ LYS C 5 -9.406 8.743 -24.105 1.00123.02 ATOM 44 N GLY C 6 -10.275 10.296 -17.421 1.00123.02 ATOM 45 CA GLY C 6 -11.516 10.088 -16.660 1.00123.02 ATOM 46 C GLY C 6 -11.797 11.187 -15.657 1.00123.02 ATOM 47 O GLY C 6 -12.953 11.565 -15.457 1.00123.02 ATOM 48 N ALA C 7 -10.734 11.697 -15.025 1.00123.02 ATOM 49 CA ALA C 7 -10.848 12.825 -14.105 1.00123.02 ATOM 50 C ALA C 7 -11.268 14.096 -14.847 1.00123.02 ATOM 51 O ALA C 7 -12.102 14.862 -14.349 1.00123.02 ATOM 52 CB ALA C 7 -9.532 13.042 -13.365 1.00123.02 ATOM 53 N LEU C 8 -10.683 14.306 -16.039 1.00123.02 ATOM 54 CA LEU C 8 -11.054 15.413 -16.927 1.00123.02 ATOM 55 C LEU C 8 -12.510 15.307 -17.344 1.00123.02 ATOM 56 O LEU C 8 -13.162 16.319 -17.590 1.00123.02 ATOM 57 CB LEU C 8 -10.172 15.435 -18.179 1.00123.02 ATOM 58 CG LEU C 8 -8.765 16.016 -18.017 1.00123.02 ATOM 59 CD1 LEU C 8 -7.907 15.697 -19.241 1.00123.02 ATOM 60 CD2 LEU C 8 -8.823 17.521 -17.759 1.00123.02 ATOM 61 N ALA C 9 -13.002 14.069 -17.427 1.00123.02 ATOM 62 CA ALA C 9 -14.401 13.800 -17.740 1.00123.02 ATOM 63 C ALA C 9 -15.304 14.257 -16.601 1.00123.02 ATOM 64 O ALA C 9 -16.356 14.849 -16.842 1.00123.02 ATOM 65 CB ALA C 9 -14.613 12.307 -18.033 1.00123.02 ATOM 66 N VAL C 10 -14.878 13.989 -15.365 1.00123.02 ATOM 67 CA VAL C 10 -15.685 14.294 -14.183 1.00123.02 ATOM 68 C VAL C 10 -15.749 15.793 -13.914 1.00123.02 ATOM 69 O VAL C 10 -16.818 16.311 -13.596 1.00123.02 ATOM 70 CB VAL C 10 -15.194 13.539 -12.921 1.00123.02 ATOM 71 CG1 VAL C 10 -16.091 13.831 -11.719 1.00123.02 ATOM 72 CG2 VAL C 10 -15.173 12.044 -13.180 1.00123.02 ATOM 73 N ILE C 11 -14.619 16.486 -14.051 1.00123.02 ATOM 74 CA ILE C 11 -14.585 17.940 -13.837 1.00123.02 ATOM 75 C ILE C 11 -15.336 18.722 -14.923 1.00123.02 ATOM 76 O ILE C 11 -15.833 19.822 -14.665 1.00123.02 ATOM 77 CB ILE C 11 -13.144 18.493 -13.687 1.00123.02 ATOM 78 CG1 ILE C 11 -12.299 18.146 -14.924 1.00123.02 ATOM 79 CG2 ILE C 11 -12.504 17.962 -12.410 1.00123.02 ATOM 80 CD1 ILE C 11 -11.141 19.087 -15.183 1.00123.02 ATOM 81 N LEU C 12 -15.412 18.147 -16.126 1.00123.02 ATOM 82 CA LEU C 12 -16.122 18.748 -17.263 1.00123.02 ATOM 83 C LEU C 12 -17.639 18.707 -17.032 1.00123.02 ATOM 84 O LEU C 12 -18.327 19.726 -17.195 1.00123.02 ATOM 85 CB LEU C 12 -15.746 18.024 -18.571 1.00123.02 ATOM 86 CG LEU C 12 -15.630 18.793 -19.914 1.00123.02 ATOM 87 CD1 LEU C 12 -17.008 19.113 -20.489 1.00123.02 ATOM 88 CD2 LEU C 12 -14.760 20.048 -19.788 1.00123.02 ATOM 89 N VAL C 13 -18.145 17.530 -16.645 1.00123.02 ATOM 90 CA VAL C 13 -19.523 17.374 -16.164 1.00123.02 ATOM 91 C VAL C 13 -19.819 18.470 -15.148 1.00123.02 ATOM 92 O VAL C 13 -20.844 19.146 -15.246 1.00123.02 ATOM 93 CB VAL C 13 -19.771 15.965 -15.550 1.00123.02 ATOM 94 CG1 VAL C 13 -21.011 15.948 -14.665 1.00123.02 ATOM 95 CG2 VAL C 13 -19.903 14.925 -16.648 1.00123.02 ATOM 96 N LEU C 14 -18.898 18.664 -14.202 1.00123.02 ATOM 97 CA LEU C 14 -19.016 19.730 -13.209 1.00123.02 ATOM 98 C LEU C 14 -18.961 21.126 -13.837 1.00123.02 ATOM 99 O LEU C 14 -19.625 22.047 -13.354 1.00123.02 ATOM 100 CB LEU C 14 -17.946 19.596 -12.119 1.00123.02 ATOM 101 CG LEU C 14 -18.117 20.472 -10.873 1.00123.02 ATOM 102 CD1 LEU C 14 -19.182 19.917 -9.931 1.00123.02 ATOM 103 CD2 LEU C 14 -16.807 20.631 -10.146 1.00123.02 ATOM 104 N THR C 15 -18.181 21.286 -14.907 1.00123.02 ATOM 105 CA THR C 15 -18.096 22.578 -15.590 1.00123.02 ATOM 106 C THR C 15 -19.411 22.897 -16.301 1.00123.02 ATOM 107 O THR C 15 -19.863 24.049 -16.299 1.00123.02 ATOM 108 CB THR C 15 -16.924 22.631 -16.598 1.00123.02 ATOM 109 OG1 THR C 15 -15.710 22.240 -15.922 1.00123.02 ATOM 110 CG2 THR C 15 -16.739 24.058 -17.152 1.00123.02 ATOM 111 N LEU C 16 -20.026 21.876 -16.896 1.00123.02 ATOM 112 CA LEU C 16 -21.317 22.044 -17.558 1.00123.02 ATOM 113 C LEU C 16 -22.454 22.262 -16.555 1.00123.02 ATOM 114 O LEU C 16 -23.382 23.023 -16.829 1.00123.02 ATOM 115 CB LEU C 16 -21.631 20.851 -18.474 1.00123.02 ATOM 116 CG LEU C 16 -20.774 20.628 -19.731 1.00123.02 ATOM 117 CD1 LEU C 16 -21.216 19.351 -20.475 1.00123.02 ATOM 118 CD2 LEU C 16 -20.791 21.860 -20.666 1.00123.02 ATOM 119 N THR C 17 -22.374 21.596 -15.401 1.00123.02 ATOM 120 CA THR C 17 -23.377 21.746 -14.337 1.00123.02 ATOM 121 C THR C 17 -23.415 23.175 -13.788 1.00123.02 ATOM 122 O THR C 17 -24.492 23.742 -13.624 1.00123.02 ATOM 123 CB THR C 17 -23.167 20.734 -13.172 1.00123.02 ATOM 124 OG1 THR C 17 -23.064 19.404 -13.708 1.00123.02 ATOM 125 CG2 THR C 17 -24.346 20.769 -12.192 1.00123.02 ATOM 126 N ILE C 18 -22.244 23.753 -13.517 1.00123.02 ATOM 127 CA ILE C 18 -22.160 25.135 -13.033 1.00123.02 ATOM 128 C ILE C 18 -22.656 26.127 -14.084 1.00123.02 ATOM 129 O ILE C 18 -23.278 27.128 -13.739 1.00123.02 ATOM 130 CB ILE C 18 -20.726 25.510 -12.581 1.00123.02 ATOM 131 CG1 ILE C 18 -20.281 24.606 -11.426 1.00123.02 ATOM 132 CG2 ILE C 18 -20.642 26.987 -12.165 1.00123.02 ATOM 133 CD1 ILE C 18 -18.773 24.413 -11.338 1.00123.02 ATOM 134 N LEU C 19 -22.395 25.838 -15.361 1.00123.02 ATOM 135 CA LEU C 19 -22.771 26.749 -16.447 1.00123.02 ATOM 136 C LEU C 19 -24.281 26.736 -16.739 1.00123.02 ATOM 137 O LEU C 19 -24.877 27.790 -16.999 1.00123.02 ATOM 138 CB LEU C 19 -21.966 26.444 -17.723 1.00123.02 ATOM 139 CG LEU C 19 -20.427 26.740 -17.719 1.00123.02 ATOM 140 CD1 LEU C 19 -19.836 26.208 -19.033 1.00123.02 ATOM 141 CD2 LEU C 19 -20.059 28.268 -17.665 1.00123.02 ATOM 142 N VAL C 20 -24.890 25.546 -16.697 1.00123.02 ATOM 143 CA VAL C 20 -26.331 25.409 -16.933 1.00123.02 ATOM 144 C VAL C 20 -27.120 26.044 -15.785 1.00123.02 ATOM 145 O VAL C 20 -28.142 26.688 -16.010 1.00123.02 ATOM 146 CB VAL C 20 -26.745 23.921 -17.155 1.00123.02 ATOM 147 CG1 VAL C 20 -28.259 23.783 -17.240 1.00123.02 ATOM 148 CG2 VAL C 20 -26.109 23.382 -18.423 1.00123.02 ATOM 149 N PHE C 21 -26.628 25.869 -14.561 1.00123.02 ATOM 150 CA PHE C 21 -27.226 26.489 -13.379 1.00123.02 ATOM 151 C PHE C 21 -27.061 28.017 -13.374 1.00123.02 ATOM 152 O PHE C 21 -28.059 28.771 -13.363 1.00123.02 ATOM 153 CB PHE C 21 -26.594 25.912 -12.104 1.00123.02 ATOM 154 CG PHE C 21 -27.396 24.818 -11.450 1.00123.02 ATOM 155 CD1 PHE C 21 -27.719 23.660 -12.154 1.00123.02 ATOM 156 CD2 PHE C 21 -27.775 24.927 -10.115 1.00123.02 ATOM 157 CE1 PHE C 21 -28.435 22.624 -11.555 1.00123.02 ATOM 158 CE2 PHE C 21 -28.492 23.916 -9.492 1.00123.02 ATOM 159 CZ PHE C 21 -28.821 22.764 -10.207 1.00123.02 ATOM 160 N TRP C 22 -25.800 28.465 -13.381 1.00123.02 ATOM 161 CA TRP C 22 -25.482 29.884 -13.244 1.00123.02 ATOM 162 C TRP C 22 -26.094 30.716 -14.361 1.00123.02 ATOM 163 O TRP C 22 -26.898 31.607 -14.093 1.00123.02 ATOM 164 CB TRP C 22 -23.975 30.078 -13.215 1.00123.02 ATOM 165 CG TRP C 22 -23.555 31.318 -12.548 1.00123.02 ATOM 166 CD1 TRP C 22 -23.186 31.451 -11.250 1.00123.02 ATOM 167 CD2 TRP C 22 -23.440 32.620 -13.137 1.00123.02 ATOM 168 NE1 TRP C 22 -22.843 32.754 -10.985 1.00123.02 ATOM 169 CE2 TRP C 22 -22.991 33.495 -12.127 1.00123.02 ATOM 170 CE3 TRP C 22 -23.672 33.131 -14.421 1.00123.02 ATOM 171 CZ2 TRP C 22 -22.767 34.855 -12.354 1.00123.02 ATOM 172 CZ3 TRP C 22 -23.450 34.485 -14.649 1.00123.02 ATOM 173 CH2 TRP C 22 -23.003 35.331 -13.617 1.00123.02 ATOM 174 N LEU C 23 -25.715 30.415 -15.607 1.00123.02 ATOM 175 CA LEU C 23 -26.269 31.092 -16.784 1.00123.02 ATOM 176 C LEU C 23 -27.790 30.951 -16.862 1.00123.02 ATOM 177 O LEU C 23 -28.478 31.865 -17.317 1.00123.02 ATOM 178 CB LEU C 23 -25.614 30.574 -18.075 1.00123.02 ATOM 179 CG LEU C 23 -24.438 31.329 -18.722 1.00123.02 ATOM 180 CD1 LEU C 23 -23.434 31.865 -17.710 1.00123.02 ATOM 181 CD2 LEU C 23 -23.727 30.440 -19.735 1.00123.02 ATOM 182 N GLY C 24 -28.305 29.808 -16.413 1.00123.02 ATOM 183 CA GLY C 24 -29.743 29.583 -16.335 1.00123.02 ATOM 184 C GLY C 24 -30.410 30.553 -15.381 1.00123.02 ATOM 185 O GLY C 24 -31.461 31.123 -15.707 1.00123.02 ATOM 186 N VAL C 25 -29.784 30.746 -14.212 1.00123.02 ATOM 187 CA VAL C 25 -30.276 31.669 -13.177 1.00123.02 ATOM 188 C VAL C 25 -30.063 33.143 -13.587 1.00123.02 ATOM 189 O VAL C 25 -30.839 34.028 -13.202 1.00123.02 ATOM 190 CB VAL C 25 -29.629 31.347 -11.786 1.00123.02 ATOM 191 CG1 VAL C 25 -29.922 32.503 -10.790 1.00123.02 ATOM 192 CG2 VAL C 25 -30.253 30.072 -11.200 1.00123.02 ATOM 193 N TYR C 26 -29.018 33.386 -14.390 1.00123.02 ATOM 194 CA TYR C 26 -28.749 34.707 -14.952 1.00123.02 ATOM 195 C TYR C 26 -29.817 35.120 -15.953 1.00123.02 ATOM 196 O TYR C 26 -29.921 36.294 -16.298 1.00123.02 ATOM 197 CB TYR C 26 -27.385 34.698 -15.639 1.00123.02 ATOM 198 CG TYR C 26 -26.758 36.065 -15.821 1.00123.02 ATOM 199 CD1 TYR C 26 -26.113 36.723 -14.749 1.00123.02 ATOM 200 CD2 TYR C 26 -26.781 36.693 -17.065 1.00123.02 ATOM 201 CE1 TYR C 26 -25.517 37.975 -14.914 1.00123.02 ATOM 202 CE2 TYR C 26 -26.189 37.948 -17.243 1.00123.02 ATOM 203 CZ TYR C 26 -25.556 38.587 -16.163 1.00123.02 ATOM 204 OH TYR C 26 -24.963 39.830 -16.346 1.00123.02 ATOM 205 N ALA C 27 -30.595 34.144 -16.421 1.00123.02 ATOM 206 CA ALA C 27 -31.701 34.387 -17.348 1.00123.02 ATOM 207 C ALA C 27 -32.923 34.915 -16.614 1.00123.02 ATOM 208 O ALA C 27 -33.464 35.958 -16.981 1.00123.02 ATOM 209 CB ALA C 27 -32.057 33.113 -18.132 1.00123.02 ATOM 210 N VAL C 28 -33.342 34.194 -15.573 1.00123.02 ATOM 211 CA VAL C 28 -34.561 34.518 -14.833 1.00123.02 ATOM 212 C VAL C 28 -34.447 35.867 -14.123 1.00123.02 ATOM 213 O VAL C 28 -35.439 36.586 -13.991 1.00123.02 ATOM 214 CB VAL C 28 -34.944 33.390 -13.836 1.00123.02 ATOM 215 CG1 VAL C 28 -36.250 33.704 -13.124 1.00123.02 ATOM 216 CG2 VAL C 28 -35.083 32.062 -14.568 1.00123.02 ATOM 217 N PHE C 29 -33.236 36.215 -13.690 1.00123.02 ATOM 218 CA PHE C 29 -32.998 37.502 -13.037 1.00123.02 ATOM 219 C PHE C 29 -33.317 38.691 -13.945 1.00123.02 ATOM 220 O PHE C 29 -33.969 39.639 -13.510 1.00123.02 ATOM 221 CB PHE C 29 -31.562 37.597 -12.519 1.00123.02 ATOM 222 CG PHE C 29 -31.236 38.914 -11.882 1.00123.02 ATOM 223 CD1 PHE C 29 -31.805 39.269 -10.664 1.00123.02 ATOM 224 CD2 PHE C 29 -30.358 39.800 -12.503 1.00123.02 ATOM 225 CE1 PHE C 29 -31.504 40.490 -10.075 1.00123.02 ATOM 226 CE2 PHE C 29 -30.049 41.022 -11.922 1.00123.02 ATOM 227 CZ PHE C 29 -30.624 41.369 -10.706 1.00123.02 ATOM 228 N PHE C 30 -32.860 38.639 -15.196 1.00123.02 ATOM 229 CA PHE C 30 -33.156 39.698 -16.166 1.00123.02 ATOM 230 C PHE C 30 -34.597 39.634 -16.671 1.00123.02 ATOM 231 O PHE C 30 -35.206 40.673 -16.941 1.00123.02 ATOM 232 CB PHE C 30 -32.167 39.685 -17.341 1.00123.02 ATOM 233 CG PHE C 30 -30.874 40.439 -17.064 1.00123.02 ATOM 234 CD1 PHE C 30 -30.890 41.824 -16.858 1.00123.02 ATOM 235 CD2 PHE C 30 -29.648 39.768 -17.028 1.00123.02 ATOM 236 CE1 PHE C 30 -29.706 42.529 -16.609 1.00123.02 ATOM 237 CE2 PHE C 30 -28.449 40.461 -16.781 1.00123.02 ATOM 238 CZ PHE C 30 -28.486 41.846 -16.574 1.00123.02 ATOM 239 N ALA C 31 -35.139 38.418 -16.779 1.00123.02 ATOM 240 CA ALA C 31 -36.559 38.215 -17.119 1.00123.02 ATOM 241 C ALA C 31 -37.508 38.569 -15.957 1.00123.02 ATOM 242 O ALA C 31 -38.745 38.628 -16.145 1.00123.02 ATOM 243 CB ALA C 31 -36.801 36.782 -17.599 1.00123.02 ATOM 244 N ARG C 32 -36.924 38.780 -14.765 1.00123.02 ATOM 245 CA ARG C 32 -37.632 39.385 -13.632 1.00123.02 ATOM 246 C ARG C 32 -37.111 40.799 -13.352 1.00123.02 ATOM 247 O ARG C 32 -37.571 41.469 -12.416 1.00123.02 ATOM 248 CB ARG C 32 -37.462 38.544 -12.369 1.00123.02 ATOM 249 CG ARG C 32 -38.235 37.246 -12.362 1.00123.02 ATOM 250 CD ARG C 32 -38.239 36.660 -10.935 1.00123.02 ATOM 251 NE ARG C 32 -38.523 35.219 -10.942 1.00123.02 ATOM 252 CZ ARG C 32 -38.406 34.419 -9.881 1.00123.02 ATOM 253 NH1 ARG C 32 -38.684 33.122 -10.000 1.00123.02 ATOM 254 NH2 ARG C 32 -38.013 34.909 -8.704 1.00123.02 ATOM 255 N GLY C 33 -36.149 41.239 -14.164 1.00123.02 ATOM 256 CA GLY C 33 -35.509 42.543 -13.992 1.00123.02 ATOM 257 C GLY C 33 -36.222 43.679 -14.718 1.00123.02 ATOM 258 O GLY C 33 -37.109 43.468 -15.575 1.00123.02 ATOM 259 OXT GLY C 33 -35.927 44.854 -14.470 1.00123.02 TER