HEADER OXIDOREDUCTASE 31-DEC-69 3VAZ TITLE Crystal structure of Staphylococcal GAPDH1 in a hexagonal space group COMPND MOL_ID: 1; COMPND 2 MOLECULE: Glyceraldehyde-3-phosphate dehydrogenase 1; COMPND 3 CHAIN: P, R, O, Q, B, A; COMPND 4 EC: 1.2.1.12; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.19 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 9 DBREF 3VAZ A 1 336 UNP Q6GIL8 G3P1_STAAR 1 336 SEQRES 1 A 141 MET ALA VAL LYS VAL ALA ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 141 GLY ARG LEU ALA PHE ARG ARG ILE GLN GLU VAL GLU GLY SEQRES 3 A 141 LEU GLU VAL VAL ALA VAL ASN ASP LEU THR ASP ASP ASP SEQRES 4 A 141 MET LEU ALA HIS LEU LEU LYS TYR ASP THR MET GLN GLY SEQRES 5 A 141 ARG PHE THR GLY GLU VAL GLU VAL VAL ASP GLY GLY PHE SEQRES 6 A 141 ARG VAL ASN GLY LYS GLU VAL LYS SER PHE SER GLU PRO SEQRES 7 A 141 ASP ALA SER LYS LEU PRO TRP LYS ASP LEU ASN ILE ASP SEQRES 8 A 141 VAL VAL LEU GLU CYS THR GLY PHE TYR THR ASP LYS ASP SEQRES 9 A 141 LYS ALA GLN ALA HIS ILE GLU ALA GLY ALA LYS LYS VAL SEQRES 10 A 141 LEU ILE SER ALA PRO ALA THR GLY ASP LEU LYS THR ILE SEQRES 11 A 141 VAL PHE ASN THR ASN HIS GLN GLU LEU ASP GLY SEQRES 1 A 20 LEU VAL LYS VAL ALA ALA TRP TYR ASP ASN GLU MET SER SEQRES 2 A 20 TYR THR ALA GLN LEU VAL ARG ATOM 1 N LEU A 315 -3.857 60.343 13.995 1.00 14.49 ATOM 2 CA LEU A 315 -5.224 59.861 13.822 1.00 13.52 ATOM 3 C LEU A 315 -5.876 60.699 12.729 1.00 13.10 ATOM 4 O LEU A 315 -5.841 61.932 12.784 1.00 13.33 ATOM 5 CB LEU A 315 -6.030 60.005 15.117 1.00 13.31 ATOM 6 CG LEU A 315 -5.917 58.966 16.234 1.00 13.36 ATOM 7 CD1 LEU A 315 -6.530 59.507 17.513 1.00 13.36 ATOM 8 CD2 LEU A 315 -6.581 57.654 15.841 1.00 12.85 ATOM 9 N VAL A 316 -6.462 60.038 11.735 1.00 12.47 ATOM 10 CA VAL A 316 -7.163 60.740 10.659 1.00 12.03 ATOM 11 C VAL A 316 -8.662 60.460 10.746 1.00 11.21 ATOM 12 O VAL A 316 -9.083 59.302 10.803 1.00 10.88 ATOM 13 CB VAL A 316 -6.617 60.357 9.255 1.00 12.18 ATOM 14 CG1 VAL A 316 -7.268 61.214 8.169 1.00 12.03 ATOM 15 CG2 VAL A 316 -5.100 60.520 9.204 1.00 12.89 ATOM 16 N LYS A 317 -9.458 61.526 10.768 1.00 10.90 ATOM 17 CA LYS A 317 -10.914 61.412 10.830 1.00 10.17 ATOM 18 C LYS A 317 -11.565 61.847 9.518 1.00 9.86 ATOM 19 O LYS A 317 -11.178 62.857 8.924 1.00 10.17 ATOM 20 CB LYS A 317 -11.472 62.226 12.005 1.00 10.14 ATOM 21 CG LYS A 317 -12.995 62.176 12.149 1.00 9.59 ATOM 22 CD LYS A 317 -13.481 62.892 13.401 1.00 9.63 ATOM 23 CE LYS A 317 -13.462 61.974 14.614 1.00 9.59 ATOM 24 NZ LYS A 317 -13.922 62.664 15.849 1.00 9.69 ATOM 25 N VAL A 318 -12.550 61.069 9.077 1.00 9.29 ATOM 26 CA VAL A 318 -13.335 61.375 7.878 1.00 8.98 ATOM 27 C VAL A 318 -14.836 61.281 8.170 1.00 8.44 ATOM 28 O VAL A 318 -15.241 60.701 9.182 1.00 8.21 ATOM 29 CB VAL A 318 -12.969 60.444 6.690 1.00 9.02 ATOM 30 CG1 VAL A 318 -11.609 60.812 6.115 1.00 9.54 ATOM 31 CG2 VAL A 318 -13.005 58.975 7.110 1.00 8.81 ATOM 32 N ALA A 319 -15.654 61.853 7.286 1.00 8.23 ATOM 33 CA ALA A 319 -17.110 61.824 7.443 1.00 7.78 ATOM 34 C ALA A 319 -17.849 61.736 6.108 1.00 7.63 ATOM 35 O ALA A 319 -17.496 62.421 5.145 1.00 7.87 ATOM 36 CB ALA A 319 -17.588 63.035 8.237 1.00 7.80 ATOM 37 N ALA A 320 -18.875 60.889 6.068 1.00 7.28 ATOM 38 CA ALA A 320 -19.686 60.693 4.868 1.00 7.17 ATOM 39 C ALA A 320 -21.183 60.747 5.177 1.00 6.87 ATOM 40 O ALA A 320 -21.650 60.134 6.140 1.00 6.66 ATOM 41 CB ALA A 320 -19.328 59.373 4.197 1.00 7.20 ATOM 42 N TRP A 321 -21.922 61.488 4.353 1.00 6.91 ATOM 43 CA TRP A 321 -23.375 61.592 4.477 1.00 6.69 ATOM 44 C TRP A 321 -24.073 60.477 3.707 1.00 6.62 ATOM 45 O TRP A 321 -23.541 59.971 2.715 1.00 6.78 ATOM 46 CB TRP A 321 -23.872 62.934 3.937 1.00 6.83 ATOM 47 CG TRP A 321 -23.423 64.135 4.706 1.00 6.93 ATOM 48 CD1 TRP A 321 -22.399 64.974 4.382 1.00 7.23 ATOM 49 CD2 TRP A 321 -23.997 64.649 5.916 1.00 6.78 ATOM 50 NE1 TRP A 321 -22.290 65.975 5.317 1.00 7.31 ATOM 51 CE2 TRP A 321 -23.257 65.799 6.271 1.00 7.04 ATOM 52 CE3 TRP A 321 -25.057 64.245 6.739 1.00 6.52 ATOM 53 CZ2 TRP A 321 -23.545 66.553 7.413 1.00 7.04 ATOM 54 CZ3 TRP A 321 -25.342 64.996 7.877 1.00 6.52 ATOM 55 CH2 TRP A 321 -24.587 66.137 8.201 1.00 6.78 ATOM 56 N TYR A 322 -25.268 60.110 4.166 1.00 6.43 ATOM 57 CA TYR A 322 -26.142 59.194 3.432 1.00 6.42 ATOM 58 C TYR A 322 -27.601 59.318 3.855 1.00 6.29 ATOM 59 O TYR A 322 -27.919 59.263 5.046 1.00 6.13 ATOM 60 CB TYR A 322 -25.662 57.734 3.533 1.00 6.42 ATOM 61 CG TYR A 322 -25.660 57.124 4.923 1.00 6.30 ATOM 62 CD1 TYR A 322 -24.798 57.592 5.916 1.00 6.31 ATOM 63 CD2 TYR A 322 -26.493 56.050 5.231 1.00 6.28 ATOM 64 CE1 TYR A 322 -24.785 57.022 7.183 1.00 6.24 ATOM 65 CE2 TYR A 322 -26.485 55.474 6.498 1.00 6.23 ATOM 66 CZ TYR A 322 -25.628 55.962 7.465 1.00 6.20 ATOM 67 OH TYR A 322 -25.621 55.394 8.717 1.00 6.17 ATOM 68 N ASP A 323 -28.481 59.502 2.873 1.00 6.38 ATOM 69 CA ASP A 323 -29.910 59.353 3.101 1.00 6.30 ATOM 70 C ASP A 323 -30.162 57.860 3.244 1.00 6.24 ATOM 71 O ASP A 323 -30.432 57.169 2.260 1.00 6.41 ATOM 72 CB ASP A 323 -30.730 59.934 1.943 1.00 6.52 ATOM 73 CG ASP A 323 -32.238 59.827 2.169 1.00 6.56 ATOM 74 OD1 ASP A 323 -32.671 59.544 3.306 1.00 6.41 ATOM 75 OD2 ASP A 323 -32.998 60.035 1.202 1.00 6.80 ATOM 76 N ASN A 324 -30.058 57.373 4.479 1.00 6.03 ATOM 77 CA ASN A 324 -30.183 55.945 4.784 1.00 5.99 ATOM 78 C ASN A 324 -31.390 55.262 4.132 1.00 6.14 ATOM 79 O ASN A 324 -31.488 54.033 4.123 1.00 6.24 ATOM 80 CB ASN A 324 -30.160 55.701 6.300 1.00 5.85 ATOM 81 CG ASN A 324 -31.165 56.554 7.051 1.00 5.79 ATOM 82 OD1 ASN A 324 -32.247 56.089 7.404 1.00 5.84 ATOM 83 ND2 ASN A 324 -30.811 57.809 7.301 1.00 5.72 ATOM 84 N GLU A 325 -32.292 56.073 3.584 1.00 6.19 ATOM 85 CA GLU A 325 -33.416 55.582 2.795 1.00 6.40 ATOM 86 C GLU A 325 -33.084 55.524 1.298 1.00 6.61 ATOM 87 O GLU A 325 -32.809 54.444 0.774 1.00 6.76 ATOM 88 CB GLU A 325 -34.669 56.424 3.054 1.00 6.44 ATOM 89 CG GLU A 325 -35.283 56.214 4.434 1.00 6.32 ATOM 90 CD GLU A 325 -36.635 56.891 4.600 1.00 6.44 ATOM 91 OE1 GLU A 325 -36.978 57.778 3.787 1.00 6.56 ATOM 92 OE2 GLU A 325 -37.358 56.535 5.553 1.00 6.46 ATOM 93 N MET A 326 -33.096 56.676 0.624 1.00 6.65 ATOM 94 CA MET A 326 -32.889 56.738 -0.830 1.00 6.93 ATOM 95 C MET A 326 -31.472 56.341 -1.255 1.00 6.92 ATOM 96 O MET A 326 -31.300 55.650 -2.260 1.00 7.19 ATOM 97 CB MET A 326 -33.254 58.121 -1.386 1.00 7.05 ATOM 98 CG MET A 326 -33.364 58.188 -2.911 1.00 7.45 ATOM 99 SD MET A 326 -34.722 57.213 -3.598 1.00 7.82 ATOM 100 CE MET A 326 -36.134 58.231 -3.173 1.00 7.86 ATOM 101 N SER A 327 -30.472 56.786 -0.495 1.00 6.67 ATOM 102 CA SER A 327 -29.075 56.429 -0.750 1.00 6.68 ATOM 103 C SER A 327 -28.900 54.917 -0.795 1.00 6.76 ATOM 104 O SER A 327 -28.300 54.383 -1.731 1.00 6.98 ATOM 105 CB SER A 327 -28.156 57.026 0.317 1.00 6.43 ATOM 106 OG SER A 327 -28.165 58.441 0.261 1.00 6.45 ATOM 107 N TYR A 328 -29.435 54.239 0.219 1.00 6.60 ATOM 108 CA TYR A 328 -29.424 52.785 0.257 1.00 6.73 ATOM 109 C TYR A 328 -30.271 52.194 -0.869 1.00 7.09 ATOM 110 O TYR A 328 -29.866 51.224 -1.513 1.00 7.33 ATOM 111 CB TYR A 328 -29.912 52.257 1.609 1.00 6.55 ATOM 112 CG TYR A 328 -29.874 50.752 1.667 1.00 6.73 ATOM 113 CD1 TYR A 328 -28.661 50.081 1.793 1.00 6.76 ATOM 114 CD2 TYR A 328 -31.040 49.996 1.554 1.00 6.97 ATOM 115 CE1 TYR A 328 -28.605 48.703 1.828 1.00 6.99 ATOM 116 CE2 TYR A 328 -30.994 48.609 1.586 1.00 7.21 ATOM 117 CZ TYR A 328 -29.771 47.972 1.725 1.00 7.20 ATOM 118 OH TYR A 328 -29.699 46.601 1.760 1.00 7.48 ATOM 119 N THR A 329 -31.444 52.787 -1.089 1.00 7.18 ATOM 120 CA THR A 329 -32.385 52.343 -2.117 1.00 7.59 ATOM 121 C THR A 329 -31.778 52.401 -3.519 1.00 7.94 ATOM 122 O THR A 329 -31.829 51.416 -4.261 1.00 8.27 ATOM 123 CB THR A 329 -33.695 53.166 -2.068 1.00 7.64 ATOM 124 OG1 THR A 329 -34.393 52.882 -0.849 1.00 7.47 ATOM 125 CG2 THR A 329 -34.594 52.841 -3.247 1.00 8.12 ATOM 126 N ALA A 330 -31.206 53.553 -3.870 1.00 7.91 ATOM 127 CA ALA A 330 -30.542 53.734 -5.159 1.00 8.29 ATOM 128 C ALA A 330 -29.442 52.693 -5.358 1.00 8.43 ATOM 129 O ALA A 330 -29.287 52.154 -6.453 1.00 8.83 ATOM 130 CB ALA A 330 -29.980 55.139 -5.279 1.00 8.19 ATOM 131 N GLN A 331 -28.697 52.411 -4.289 1.00 8.18 ATOM 132 CA GLN A 331 -27.667 51.372 -4.295 1.00 8.34 ATOM 133 C GLN A 331 -28.258 49.975 -4.466 1.00 8.66 ATOM 134 O GLN A 331 -27.693 49.140 -5.177 1.00 8.98 ATOM 135 CB GLN A 331 -26.842 51.422 -3.005 1.00 7.95 ATOM 136 CG GLN A 331 -25.823 52.542 -2.957 1.00 7.83 ATOM 137 CD GLN A 331 -24.613 52.270 -3.824 1.00 8.10 ATOM 138 OE1 GLN A 331 -24.565 52.677 -4.983 1.00 8.39 ATOM 139 NE2 GLN A 331 -23.632 51.565 -3.272 1.00 8.05 ATOM 140 N LEU A 332 -29.393 49.733 -3.811 1.00 8.69 ATOM 141 CA LEU A 332 -30.056 48.429 -3.832 1.00 9.08 ATOM 142 C LEU A 332 -30.624 48.087 -5.210 1.00 9.72 ATOM 143 O LEU A 332 -30.600 46.927 -5.624 1.00 10.08 ATOM 144 CB LEU A 332 -31.160 48.369 -2.767 1.00 8.90 ATOM 145 CG LEU A 332 -31.826 47.022 -2.462 1.00 9.15 ATOM 146 CD1 LEU A 332 -30.895 46.096 -1.685 1.00 9.05 ATOM 147 CD2 LEU A 332 -33.123 47.234 -1.697 1.00 9.09 ATOM 148 N VAL A 333 -31.127 49.102 -5.911 1.00 9.97 ATOM 149 CA VAL A 333 -31.680 48.931 -7.256 1.00 10.69 ATOM 150 C VAL A 333 -30.566 48.719 -8.291 1.00 11.12 ATOM 151 O VAL A 333 -30.744 47.980 -9.262 1.00 11.66 ATOM 152 CB VAL A 333 -32.606 50.121 -7.643 1.00 10.72 ATOM 153 CG1 VAL A 333 -33.021 50.060 -9.110 1.00 11.34 ATOM 154 CG2 VAL A 333 -33.841 50.140 -6.748 1.00 10.58 ATOM 155 N ARG A 334 -29.420 49.361 -8.065 1.00 11.06 ATOM 156 CA ARG A 334 -28.251 49.219 -8.939 1.00 11.57 ATOM 157 C ARG A 334 -27.659 47.813 -8.884 1.00 11.97 ATOM 158 O ARG A 334 -27.261 47.263 -9.914 1.00 12.46 ATOM 159 CB ARG A 334 -27.176 50.244 -8.582 1.00 11.22 ATOM 160 CG ARG A 334 -27.469 51.655 -9.042 1.00 11.22 ATOM 161 CD ARG A 334 -26.463 52.608 -8.437 1.00 10.87 ATOM 162 NE ARG A 334 -26.955 53.981 -8.403 1.00 10.76 ATOM 163 CZ ARG A 334 -26.506 54.918 -7.573 1.00 10.42 ATOM 164 NH1 ARG A 334 -25.555 54.637 -6.692 1.00 10.14 ATOM 165 NH2 ARG A 334 -27.016 56.140 -7.619 1.00 10.39 ATOM 166 PA NAD A -40.503 48.935 7.610 1.00 41.10 ATOM 167 O1A NAD A -41.205 48.536 8.882 1.00 43.97 ATOM 168 O2A NAD A -40.939 50.143 6.894 1.00 41.13 ATOM 169 O5B NAD A -40.845 47.766 6.593 1.00 41.95 ATOM 170 C5B NAD A -41.383 46.614 7.130 1.00 39.07 ATOM 171 C4B NAD A -42.393 46.282 6.080 1.00 39.98 ATOM 172 O4B NAD A -42.442 44.891 5.886 1.00 48.14 ATOM 173 C3B NAD A -43.724 46.694 6.621 1.00 43.21 ATOM 174 O3B NAD A -44.494 47.183 5.554 1.00 46.44 ATOM 175 C2B NAD A -44.276 45.414 7.211 1.00 46.13 ATOM 176 O2B NAD A -45.674 45.487 7.248 1.00 50.50 ATOM 177 C1B NAD A -43.750 44.415 6.212 1.00 45.38 ATOM 178 N9A NAD A -43.664 43.062 6.758 1.00 42.50 ATOM 179 C8A NAD A -43.229 42.693 8.022 1.00 48.06 ATOM 180 N7A NAD A -43.306 41.342 8.111 1.00 46.78 ATOM 181 C5A NAD A -43.762 40.855 6.911 1.00 45.10 ATOM 182 C6A NAD A -44.019 39.574 6.437 1.00 43.28 ATOM 183 N6A NAD A -43.333 38.554 6.940 1.00 49.08 ATOM 184 N1A NAD A -44.489 39.405 5.158 1.00 45.66 ATOM 185 C2A NAD A -44.706 40.487 4.339 1.00 45.02 ATOM 186 N3A NAD A -44.444 41.742 4.824 1.00 44.40 ATOM 187 C4A NAD A -43.978 41.932 6.065 1.00 39.45 ATOM 188 O3 NAD A -38.894 48.816 7.690 1.00 37.87 ATOM 189 PN NAD A -37.864 49.410 6.601 1.00 43.50 ATOM 190 O1N NAD A -37.268 50.629 7.204 1.00 42.95 ATOM 191 O2N NAD A -38.378 49.469 5.241 1.00 50.79 ATOM 192 O5D NAD A -36.763 48.261 6.525 1.00 42.27 ATOM 193 C5D NAD A -36.938 46.934 6.046 1.00 42.09 ATOM 194 C4D NAD A -35.556 46.222 5.984 1.00 43.68 ATOM 195 O4D NAD A -34.608 47.095 5.390 1.00 46.82 ATOM 196 C3D NAD A -34.878 45.922 7.334 1.00 42.39 ATOM 197 O3D NAD A -34.094 44.774 7.185 1.00 40.77 ATOM 198 C2D NAD A -33.939 47.093 7.596 1.00 46.04 ATOM 199 O2D NAD A -32.847 46.885 8.473 1.00 42.12 ATOM 200 C1D NAD A -33.456 47.330 6.190 1.00 43.78 ATOM 201 N1N NAD A -32.922 48.683 5.975 1.00 45.32 ATOM 202 C2N NAD A -33.538 49.787 6.518 1.00 46.31 ATOM 203 C3N NAD A -33.020 51.073 6.296 1.00 42.99 ATOM 204 C7N NAD A -33.814 52.297 6.660 1.00 44.54 ATOM 205 O7N NAD A -33.193 53.552 6.686 1.00 47.86 ATOM 206 N7N NAD A -35.113 52.214 6.928 1.00 49.13 ATOM 207 C4N NAD A -31.881 51.211 5.515 1.00 39.78 ATOM 208 C5N NAD A -31.284 50.078 4.936 1.00 41.62 ATOM 209 C6N NAD A -31.809 48.814 5.175 1.00 41.67 ATOM 210 P PO4 A -38.986 36.125 -17.758 1.00 73.04 ATOM 211 O1 PO4 A -39.473 35.207 -18.853 1.00 73.03 ATOM 212 O2 PO4 A -39.864 37.352 -17.712 1.00 73.04 ATOM 213 O3 PO4 A -37.560 36.534 -18.040 1.00 73.03 ATOM 214 O4 PO4 A -39.052 35.417 -16.426 1.00 73.04 TER