HEADER PROTEIN BINDING/METAL BINDING PROTEIN 09-JUL-12 3VUY TITLE Crystal structure of A20 ZF7 in complex with linear tetraubiquitin COMPND MOL_ID: 2; COMPND 2 MOLECULE: Tumor necrosis factor alpha-induced protein 3; COMPND 3 CHAIN: D, F, E; COMPND 4 FRAGMENT: A20-type 7 Zinc finger domain, residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.98 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY F 1 REMARK 465 PRO F 2 REMARK 465 PRO F 3 DBREF 3VUY F 757 790 UNP P21580 TNAP3_HUMAN 757 790 SEQRES 1 F 31 GLY PRO PRO LYS GLN ARG CYS ARG ALA PRO ALA CYS ASP SEQRES 2 F 31 HIS PHE GLY ASN ALA LYS CYS ASN GLY TYR CYS ASN GLU SEQRES 3 F 31 CYS PHE GLN PHE LYS ATOM 1 N LYS F 4 18.448 15.166 36.709 1.00 59.81 ATOM 2 CA LYS F 4 19.615 14.910 35.871 1.00 63.95 ATOM 3 C LYS F 4 19.210 14.411 34.491 1.00 60.66 ATOM 4 O LYS F 4 18.995 13.216 34.288 1.00 65.70 ATOM 5 CB LYS F 4 20.559 13.909 36.543 1.00 64.78 ATOM 6 CG LYS F 4 21.817 14.543 37.122 1.00 63.39 ATOM 7 CD LYS F 4 22.636 13.549 37.935 1.00 53.76 ATOM 8 CE LYS F 4 23.392 12.570 37.050 1.00 46.37 ATOM 9 NZ LYS F 4 24.179 11.594 37.858 1.00 49.91 ATOM 10 N GLN F 5 19.115 15.336 33.543 1.00 53.59 ATOM 11 CA GLN F 5 18.687 15.008 32.191 1.00 45.01 ATOM 12 C GLN F 5 19.876 14.954 31.240 1.00 37.13 ATOM 13 O GLN F 5 20.769 15.799 31.301 1.00 37.70 ATOM 14 CB GLN F 5 17.685 16.048 31.692 1.00 45.23 ATOM 15 CG GLN F 5 16.687 16.504 32.741 1.00 52.53 ATOM 16 CD GLN F 5 15.797 17.624 32.243 1.00 69.54 ATOM 17 OE1 GLN F 5 15.521 18.582 32.966 1.00 76.92 ATOM 18 NE2 GLN F 5 15.341 17.510 31.000 1.00 65.29 ATOM 19 N ARG F 6 19.882 13.957 30.362 1.00 35.71 ATOM 20 CA ARG F 6 20.888 13.869 29.312 1.00 36.01 ATOM 21 C ARG F 6 20.731 15.052 28.364 1.00 33.53 ATOM 22 O ARG F 6 19.654 15.639 28.274 1.00 35.41 ATOM 23 CB ARG F 6 20.739 12.558 28.540 1.00 33.43 ATOM 24 CG ARG F 6 20.942 11.312 29.381 1.00 48.82 ATOM 25 CD ARG F 6 22.399 11.136 29.772 1.00 43.28 ATOM 26 NE ARG F 6 22.593 9.957 30.610 1.00 45.33 ATOM 27 CZ ARG F 6 23.779 9.442 30.915 1.00 47.32 ATOM 28 NH1 ARG F 6 24.888 10.000 30.447 1.00 45.20 ATOM 29 NH2 ARG F 6 23.857 8.365 31.685 1.00 49.49 ATOM 30 N CYS F 7 21.804 15.403 27.663 1.00 31.99 ATOM 31 CA CYS F 7 21.764 16.516 26.720 1.00 43.58 ATOM 32 C CYS F 7 20.720 16.322 25.619 1.00 34.12 ATOM 33 O CYS F 7 20.403 15.195 25.242 1.00 47.80 ATOM 34 CB CYS F 7 23.136 16.742 26.091 1.00 30.84 ATOM 35 SG CYS F 7 23.075 17.868 24.695 1.00 35.26 ATOM 36 N ARG F 8 20.198 17.434 25.106 1.00 35.53 ATOM 37 CA ARG F 8 19.153 17.411 24.084 1.00 37.67 ATOM 38 C ARG F 8 19.662 16.947 22.723 1.00 41.46 ATOM 39 O ARG F 8 18.895 16.423 21.914 1.00 42.40 ATOM 40 CB ARG F 8 18.509 18.791 23.946 1.00 40.05 ATOM 41 CG ARG F 8 17.634 19.191 25.116 1.00 55.16 ATOM 42 CD ARG F 8 17.128 20.611 24.948 1.00 66.29 ATOM 43 NE ARG F 8 16.324 20.776 23.740 1.00 70.19 ATOM 44 CZ ARG F 8 15.981 21.953 23.228 1.00 63.17 ATOM 45 NH1 ARG F 8 15.246 22.009 22.126 1.00 56.05 ATOM 46 NH2 ARG F 8 16.378 23.075 23.815 1.00 47.26 ATOM 47 N ALA F 9 20.952 17.151 22.473 1.00 37.36 ATOM 48 CA ALA F 9 21.563 16.724 21.219 1.00 39.18 ATOM 49 C ALA F 9 21.470 15.210 21.064 1.00 43.87 ATOM 50 O ALA F 9 21.893 14.466 21.948 1.00 45.06 ATOM 51 CB ALA F 9 23.012 17.178 21.151 1.00 33.40 ATOM 52 N PRO F 10 20.913 14.750 19.933 1.00 49.55 ATOM 53 CA PRO F 10 20.730 13.318 19.679 1.00 53.19 ATOM 54 C PRO F 10 22.060 12.568 19.661 1.00 47.29 ATOM 55 O PRO F 10 23.042 13.078 19.119 1.00 42.02 ATOM 56 CB PRO F 10 20.075 13.288 18.294 1.00 64.40 ATOM 57 CG PRO F 10 20.457 14.584 17.662 1.00 64.79 ATOM 58 CD PRO F 10 20.494 15.572 18.786 1.00 56.03 ATOM 59 N ALA F 11 22.073 11.383 20.271 1.00 40.07 ATOM 60 CA ALA F 11 23.254 10.517 20.361 1.00 37.62 ATOM 61 C ALA F 11 24.376 11.036 21.267 1.00 31.13 ATOM 62 O ALA F 11 25.430 10.412 21.370 1.00 38.33 ATOM 63 CB ALA F 11 23.795 10.158 18.969 1.00 34.41 ATOM 64 N CYS F 12 24.156 12.169 21.924 1.00 30.65 ATOM 65 CA CYS F 12 25.110 12.636 22.925 1.00 35.41 ATOM 66 C CYS F 12 24.697 12.214 24.331 1.00 34.41 ATOM 67 O CYS F 12 23.585 12.503 24.773 1.00 39.10 ATOM 68 CB CYS F 12 25.279 14.151 22.876 1.00 32.14 ATOM 69 SG CYS F 12 26.409 14.745 24.145 1.00 27.24 ATOM 70 N ASP F 13 25.602 11.541 25.035 1.00 29.99 ATOM 71 CA ASP F 13 25.308 11.046 26.376 1.00 39.96 ATOM 72 C ASP F 13 25.853 11.935 27.494 1.00 38.01 ATOM 73 O ASP F 13 25.893 11.522 28.651 1.00 38.31 ATOM 74 CB ASP F 13 25.805 9.609 26.552 1.00 50.38 ATOM 75 CG ASP F 13 24.837 8.586 25.989 1.00 71.58 ATOM 76 OD1 ASP F 13 23.644 8.922 25.828 1.00 79.55 ATOM 77 OD2 ASP F 13 25.267 7.445 25.716 1.00 78.48 ATOM 78 N HIS F 14 26.273 13.148 27.150 1.00 34.11 ATOM 79 CA HIS F 14 26.625 14.129 28.169 1.00 32.90 ATOM 80 C HIS F 14 25.357 14.573 28.882 1.00 31.21 ATOM 81 O HIS F 14 24.255 14.421 28.356 1.00 30.52 ATOM 82 CB HIS F 14 27.319 15.347 27.557 1.00 26.29 ATOM 83 CG HIS F 14 28.741 15.101 27.150 1.00 32.96 ATOM 84 ND1 HIS F 14 29.501 16.050 26.507 1.00 25.50 ATOM 85 CD2 HIS F 14 29.533 14.015 27.302 1.00 24.65 ATOM 86 CE1 HIS F 14 30.708 15.559 26.275 1.00 25.50 ATOM 87 NE2 HIS F 14 30.754 14.328 26.747 1.00 24.36 ATOM 88 N PHE F 15 25.515 15.119 30.083 1.00 32.93 ATOM 89 CA PHE F 15 24.387 15.673 30.817 1.00 38.33 ATOM 90 C PHE F 15 24.203 17.139 30.450 1.00 30.46 ATOM 91 O PHE F 15 25.169 17.898 30.396 1.00 48.69 ATOM 92 CB PHE F 15 24.597 15.518 32.326 1.00 35.91 ATOM 93 CG PHE F 15 24.563 14.092 32.795 1.00 33.77 ATOM 94 CD1 PHE F 15 25.730 13.351 32.889 1.00 31.48 ATOM 95 CD2 PHE F 15 23.362 13.489 33.128 1.00 31.50 ATOM 96 CE1 PHE F 15 25.699 12.037 33.313 1.00 29.13 ATOM 97 CE2 PHE F 15 23.325 12.174 33.552 1.00 36.45 ATOM 98 CZ PHE F 15 24.494 11.448 33.646 1.00 33.57 ATOM 99 N GLY F 16 22.961 17.532 30.189 1.00 41.63 ATOM 100 CA GLY F 16 22.662 18.906 29.833 1.00 37.47 ATOM 101 C GLY F 16 22.430 19.769 31.057 1.00 46.30 ATOM 102 O GLY F 16 22.075 19.263 32.121 1.00 57.04 ATOM 103 N ASN F 17 22.637 21.073 30.911 1.00 39.50 ATOM 104 CA ASN F 17 22.376 22.006 32.002 1.00 43.63 ATOM 105 C ASN F 17 21.377 23.091 31.610 1.00 51.72 ATOM 106 O ASN F 17 21.205 23.392 30.428 1.00 49.52 ATOM 107 CB ASN F 17 23.678 22.623 32.525 1.00 37.42 ATOM 108 CG ASN F 17 24.367 23.499 31.499 1.00 37.37 ATOM 109 OD1 ASN F 17 24.042 24.676 31.354 1.00 39.33 ATOM 110 ND2 ASN F 17 25.335 22.932 30.791 1.00 38.64 ATOM 111 N ALA F 18 20.721 23.673 32.610 1.00 53.64 ATOM 112 CA ALA F 18 19.657 24.647 32.380 1.00 53.65 ATOM 113 C ALA F 18 20.156 25.930 31.719 1.00 47.61 ATOM 114 O ALA F 18 19.415 26.585 30.987 1.00 49.04 ATOM 115 CB ALA F 18 18.936 24.964 33.685 1.00 50.03 ATOM 116 N LYS F 19 21.408 26.288 31.985 1.00 44.92 ATOM 117 CA LYS F 19 22.010 27.463 31.364 1.00 56.83 ATOM 118 C LYS F 19 22.155 27.279 29.855 1.00 49.64 ATOM 119 O LYS F 19 21.951 28.216 29.082 1.00 51.03 ATOM 120 CB LYS F 19 23.367 27.782 32.002 1.00 61.64 ATOM 121 CG LYS F 19 24.335 28.513 31.081 1.00 72.09 ATOM 122 CD LYS F 19 25.354 29.325 31.862 1.00 79.96 ATOM 123 CE LYS F 19 25.173 30.812 31.599 1.00 85.95 ATOM 124 NZ LYS F 19 26.114 31.648 32.394 1.00 89.53 ATOM 125 N CYS F 20 22.492 26.062 29.441 1.00 48.26 ATOM 126 CA CYS F 20 22.680 25.761 28.026 1.00 45.32 ATOM 127 C CYS F 20 21.416 25.196 27.374 1.00 44.38 ATOM 128 O CYS F 20 21.495 24.452 26.397 1.00 47.11 ATOM 129 CB CYS F 20 23.853 24.797 27.834 1.00 38.27 ATOM 130 SG CYS F 20 25.458 25.460 28.343 1.00 39.60 ATOM 131 N ASN F 21 20.260 25.554 27.927 1.00 43.44 ATOM 132 CA ASN F 21 18.962 25.184 27.360 1.00 50.96 ATOM 133 C ASN F 21 18.718 23.685 27.214 1.00 49.17 ATOM 134 O ASN F 21 18.034 23.257 26.287 1.00 48.31 ATOM 135 CB ASN F 21 18.752 25.863 26.004 1.00 51.97 ATOM 136 CG ASN F 21 18.585 27.358 26.124 1.00 62.23 ATOM 137 OD1 ASN F 21 17.489 27.846 26.386 1.00 74.86 ATOM 138 ND2 ASN F 21 19.671 28.096 25.930 1.00 62.24 ATOM 139 N GLY F 22 19.271 22.893 28.125 1.00 41.24 ATOM 140 CA GLY F 22 19.098 21.454 28.071 1.00 39.93 ATOM 141 C GLY F 22 20.215 20.770 27.309 1.00 43.12 ATOM 142 O GLY F 22 20.232 19.547 27.175 1.00 47.46 ATOM 143 N TYR F 23 21.150 21.566 26.801 1.00 36.97 ATOM 144 CA TYR F 23 22.326 21.030 26.127 1.00 34.96 ATOM 145 C TYR F 23 23.508 20.979 27.087 1.00 35.82 ATOM 146 O TYR F 23 23.504 21.647 28.120 1.00 39.66 ATOM 147 CB TYR F 23 22.683 21.877 24.902 1.00 35.77 ATOM 148 CG TYR F 23 21.722 21.723 23.743 1.00 41.70 ATOM 149 CD1 TYR F 23 21.944 20.772 22.756 1.00 40.51 ATOM 150 CD2 TYR F 23 20.595 22.528 23.636 1.00 45.90 ATOM 151 CE1 TYR F 23 21.070 20.625 21.694 1.00 49.51 ATOM 152 CE2 TYR F 23 19.713 22.388 22.577 1.00 54.75 ATOM 153 CZ TYR F 23 19.958 21.436 21.609 1.00 51.17 ATOM 154 OH TYR F 23 19.086 21.292 20.554 1.00 54.72 ATOM 155 N CYS F 24 24.515 20.181 26.750 1.00 31.77 ATOM 156 CA CYS F 24 25.743 20.159 27.531 1.00 30.78 ATOM 157 C CYS F 24 26.575 21.377 27.161 1.00 38.75 ATOM 158 O CYS F 24 26.276 22.065 26.186 1.00 32.49 ATOM 159 CB CYS F 24 26.541 18.884 27.258 1.00 44.51 ATOM 160 SG CYS F 24 27.526 18.930 25.741 1.00 35.22 ATOM 161 N ASN F 25 27.619 21.638 27.940 1.00 34.86 ATOM 162 CA ASN F 25 28.503 22.770 27.686 1.00 38.11 ATOM 163 C ASN F 25 29.210 22.686 26.333 1.00 41.72 ATOM 164 O ASN F 25 29.332 23.685 25.626 1.00 33.52 ATOM 165 CB ASN F 25 29.537 22.897 28.806 1.00 36.08 ATOM 166 CG ASN F 25 28.914 23.283 30.131 1.00 34.09 ATOM 167 OD1 ASN F 25 28.166 24.257 30.217 1.00 35.95 ATOM 168 ND2 ASN F 25 29.212 22.514 31.171 1.00 33.50 ATOM 169 N GLU F 26 29.670 21.491 25.981 1.00 30.39 ATOM 170 CA GLU F 26 30.428 21.295 24.750 1.00 30.12 ATOM 171 C GLU F 26 29.556 21.489 23.512 1.00 36.93 ATOM 172 O GLU F 26 29.944 22.185 22.575 1.00 36.05 ATOM 173 CB GLU F 26 31.078 19.909 24.734 1.00 28.47 ATOM 174 CG GLU F 26 32.061 19.691 23.595 1.00 30.66 ATOM 175 CD GLU F 26 32.931 18.466 23.808 1.00 39.16 ATOM 176 OE1 GLU F 26 32.713 17.746 24.805 1.00 39.50 ATOM 177 OE2 GLU F 26 33.836 18.224 22.982 1.00 34.29 ATOM 178 N CYS F 27 28.377 20.877 23.515 1.00 30.46 ATOM 179 CA CYS F 27 27.456 20.997 22.390 1.00 31.49 ATOM 180 C CYS F 27 26.899 22.407 22.264 1.00 33.53 ATOM 181 O CYS F 27 26.632 22.881 21.158 1.00 34.91 ATOM 182 CB CYS F 27 26.318 19.982 22.505 1.00 31.15 ATOM 183 SG CYS F 27 26.754 18.337 21.914 1.00 42.19 ATOM 184 N PHE F 28 26.725 23.076 23.398 1.00 34.04 ATOM 185 CA PHE F 28 26.266 24.458 23.397 1.00 46.72 ATOM 186 C PHE F 28 27.334 25.348 22.775 1.00 40.97 ATOM 187 O PHE F 28 27.022 26.325 22.099 1.00 46.91 ATOM 188 CB PHE F 28 25.946 24.925 24.817 1.00 36.88 ATOM 189 CG PHE F 28 25.158 26.202 24.871 1.00 39.52 ATOM 190 CD1 PHE F 28 23.804 26.206 24.580 1.00 40.65 ATOM 191 CD2 PHE F 28 25.768 27.397 25.217 1.00 56.16 ATOM 192 CE1 PHE F 28 23.072 27.379 24.630 1.00 48.71 ATOM 193 CE2 PHE F 28 25.041 28.573 25.268 1.00 54.44 ATOM 194 CZ PHE F 28 23.692 28.563 24.974 1.00 48.37 ATOM 195 N GLN F 29 28.594 24.996 23.006 1.00 41.48 ATOM 196 CA GLN F 29 29.717 25.724 22.427 1.00 48.31 ATOM 197 C GLN F 29 29.778 25.521 20.915 1.00 49.95 ATOM 198 O GLN F 29 29.997 26.470 20.162 1.00 50.11 ATOM 199 CB GLN F 29 31.032 25.282 23.075 1.00 54.33 ATOM 200 CG GLN F 29 32.277 25.892 22.447 1.00 68.26 ATOM 201 CD GLN F 29 33.553 25.472 23.152 1.00 80.53 ATOM 202 OE1 GLN F 29 33.558 25.221 24.358 1.00 80.93 ATOM 203 NE2 GLN F 29 34.645 25.389 22.399 1.00 84.75 ATOM 204 N PHE F 30 29.581 24.280 20.477 1.00 45.08 ATOM 205 CA PHE F 30 29.591 23.960 19.053 1.00 45.56 ATOM 206 C PHE F 30 28.430 24.612 18.310 1.00 44.24 ATOM 207 O PHE F 30 28.554 24.956 17.135 1.00 43.55 ATOM 208 CB PHE F 30 29.564 22.446 18.830 1.00 34.75 ATOM 209 CG PHE F 30 30.919 21.802 18.871 1.00 33.64 ATOM 210 CD1 PHE F 30 31.859 22.078 17.890 1.00 37.98 ATOM 211 CD2 PHE F 30 31.251 20.912 19.879 1.00 31.74 ATOM 212 CE1 PHE F 30 33.107 21.485 17.920 1.00 38.84 ATOM 213 CE2 PHE F 30 32.498 20.314 19.913 1.00 39.00 ATOM 214 CZ PHE F 30 33.427 20.601 18.932 1.00 32.62 ATOM 215 N LYS F 31 27.302 24.773 18.996 1.00 43.56 ATOM 216 CA LYS F 31 26.135 25.417 18.402 1.00 47.15 ATOM 217 C LYS F 31 26.442 26.854 17.992 1.00 51.98 ATOM 218 O LYS F 31 25.994 27.320 16.945 1.00 53.00 ATOM 219 CB LYS F 31 24.941 25.381 19.361 1.00 49.62 ATOM 220 CG LYS F 31 23.783 26.273 18.934 1.00 64.65 ATOM 221 CD LYS F 31 22.440 25.616 19.194 1.00 70.32 ATOM 222 CE LYS F 31 22.238 25.330 20.672 1.00 73.64 ATOM 223 NZ LYS F 31 22.012 23.876 20.917 1.00 75.66 TER