HEADER OXIDOREDUCTASE 20-AUG-12 4GP5 TITLE Structure of Recombinant Cytochrome ba3 Oxidase mutant Y133W from TITLE 2 Thermus thermophilus COMPND MOL_ID: 3; COMPND 2 MOLECULE: Cytochrome c oxidase polypeptide 2A; COMPND 3 CHAIN: C; COMPND 4 EC: 1.9.3.1; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.70 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 DBREF 4GP5 C 1 34 UNP P82543 COXA_THET8 1 34 SEQRES 1 C 30 MET GLU GLU LYS PRO LYS GLY ALA LEU ALA VAL ILE LEU SEQRES 2 C 30 VAL LEU THR LEU THR ILE LEU VAL PHE TRP LEU GLY VAL SEQRES 3 C 30 TYR ALA VAL PHE ATOM 1 N LYS C 4 -24.844 -19.546 -4.225 1.00 43.14 ATOM 2 CA LYS C 4 -23.586 -18.794 -4.499 1.00 43.08 ATOM 3 C LYS C 4 -23.288 -18.680 -6.012 1.00 42.24 ATOM 4 O LYS C 4 -23.622 -19.588 -6.785 1.00 42.09 ATOM 5 CB LYS C 4 -22.384 -19.393 -3.722 1.00 43.63 ATOM 6 CG LYS C 4 -21.903 -20.812 -4.163 1.00 45.70 ATOM 7 CD LYS C 4 -20.474 -21.223 -3.627 1.00 47.62 ATOM 8 CE LYS C 4 -20.414 -22.760 -3.346 1.00 50.42 ATOM 9 NZ LYS C 4 -19.335 -23.533 -4.065 1.00 49.60 ATOM 10 N PRO C 5 -22.669 -17.568 -6.425 1.00 41.10 ATOM 11 CA PRO C 5 -22.270 -17.388 -7.801 1.00 40.40 ATOM 12 C PRO C 5 -21.087 -18.288 -8.173 1.00 39.97 ATOM 13 O PRO C 5 -19.983 -17.791 -8.439 1.00 40.04 ATOM 14 CB PRO C 5 -21.859 -15.915 -7.832 1.00 40.55 ATOM 15 CG PRO C 5 -21.409 -15.614 -6.428 1.00 40.00 ATOM 16 CD PRO C 5 -22.356 -16.378 -5.602 1.00 40.89 ATOM 17 N LYS C 6 -21.327 -19.595 -8.195 1.00 39.42 ATOM 18 CA LYS C 6 -20.295 -20.597 -8.534 1.00 39.40 ATOM 19 C LYS C 6 -19.578 -20.390 -9.901 1.00 37.97 ATOM 20 O LYS C 6 -18.355 -20.537 -9.999 1.00 36.81 ATOM 21 CB LYS C 6 -20.880 -22.027 -8.454 1.00 40.28 ATOM 22 CG LYS C 6 -21.852 -22.269 -7.245 1.00 44.57 ATOM 23 CD LYS C 6 -22.138 -23.776 -6.871 1.00 49.67 ATOM 24 CE LYS C 6 -22.744 -24.599 -8.051 1.00 52.20 ATOM 25 NZ LYS C 6 -23.587 -23.770 -9.008 1.00 52.23 ATOM 26 N GLY C 7 -20.343 -20.057 -10.938 1.00 36.52 ATOM 27 CA GLY C 7 -19.761 -19.791 -12.257 1.00 35.26 ATOM 28 C GLY C 7 -18.856 -18.556 -12.306 1.00 34.21 ATOM 29 O GLY C 7 -17.742 -18.599 -12.860 1.00 33.35 ATOM 30 N ALA C 8 -19.342 -17.458 -11.727 1.00 32.72 ATOM 31 CA ALA C 8 -18.565 -16.250 -11.608 1.00 31.15 ATOM 32 C ALA C 8 -17.254 -16.595 -10.939 1.00 30.35 ATOM 33 O ALA C 8 -16.190 -16.318 -11.476 1.00 30.73 ATOM 34 CB ALA C 8 -19.322 -15.208 -10.823 1.00 31.13 ATOM 35 N LEU C 9 -17.332 -17.221 -9.770 1.00 29.26 ATOM 36 CA LEU C 9 -16.146 -17.653 -9.062 1.00 27.73 ATOM 37 C LEU C 9 -15.174 -18.424 -9.954 1.00 27.22 ATOM 38 O LEU C 9 -13.972 -18.147 -9.956 1.00 27.43 ATOM 39 CB LEU C 9 -16.550 -18.440 -7.832 1.00 27.55 ATOM 40 CG LEU C 9 -17.051 -17.520 -6.702 1.00 28.66 ATOM 41 CD1 LEU C 9 -17.833 -18.336 -5.655 1.00 25.50 ATOM 42 CD2 LEU C 9 -15.882 -16.683 -6.060 1.00 26.92 ATOM 43 N ALA C 10 -15.697 -19.371 -10.728 1.00 26.63 ATOM 44 CA ALA C 10 -14.874 -20.153 -11.657 1.00 25.82 ATOM 45 C ALA C 10 -14.207 -19.272 -12.734 1.00 25.58 ATOM 46 O ALA C 10 -13.098 -19.559 -13.196 1.00 25.50 ATOM 47 CB ALA C 10 -15.688 -21.250 -12.297 1.00 25.12 ATOM 48 N VAL C 11 -14.884 -18.203 -13.125 1.00 25.09 ATOM 49 CA VAL C 11 -14.308 -17.294 -14.068 1.00 25.31 ATOM 50 C VAL C 11 -13.108 -16.622 -13.421 1.00 26.37 ATOM 51 O VAL C 11 -12.059 -16.475 -14.083 1.00 26.77 ATOM 52 CB VAL C 11 -15.329 -16.298 -14.668 1.00 25.40 ATOM 53 CG1 VAL C 11 -14.618 -15.084 -15.340 1.00 24.38 ATOM 54 CG2 VAL C 11 -16.225 -17.035 -15.652 1.00 23.98 ATOM 55 N ILE C 12 -13.230 -16.226 -12.149 1.00 26.56 ATOM 56 CA ILE C 12 -12.104 -15.533 -11.488 1.00 26.53 ATOM 57 C ILE C 12 -10.967 -16.468 -11.055 1.00 26.45 ATOM 58 O ILE C 12 -9.820 -16.026 -10.846 1.00 25.87 ATOM 59 CB ILE C 12 -12.492 -14.506 -10.409 1.00 26.08 ATOM 60 CG1 ILE C 12 -13.300 -15.143 -9.305 1.00 27.96 ATOM 61 CG2 ILE C 12 -13.205 -13.317 -11.014 1.00 26.25 ATOM 62 CD1 ILE C 12 -12.464 -15.678 -8.194 1.00 28.73 ATOM 63 N LEU C 13 -11.279 -17.759 -10.943 1.00 26.37 ATOM 64 CA LEU C 13 -10.249 -18.771 -10.649 1.00 25.84 ATOM 65 C LEU C 13 -9.326 -18.763 -11.888 1.00 24.82 ATOM 66 O LEU C 13 -8.122 -18.469 -11.781 1.00 24.64 ATOM 67 CB LEU C 13 -10.893 -20.152 -10.346 1.00 26.05 ATOM 68 CG LEU C 13 -10.232 -21.384 -9.670 1.00 26.83 ATOM 69 CD1 LEU C 13 -9.925 -22.607 -10.616 1.00 30.33 ATOM 70 CD2 LEU C 13 -8.982 -21.022 -8.905 1.00 30.09 ATOM 71 N VAL C 14 -9.914 -19.031 -13.054 1.00 23.58 ATOM 72 CA VAL C 14 -9.198 -19.023 -14.323 1.00 22.23 ATOM 73 C VAL C 14 -8.375 -17.761 -14.464 1.00 22.20 ATOM 74 O VAL C 14 -7.210 -17.804 -14.880 1.00 22.10 ATOM 75 CB VAL C 14 -10.167 -19.167 -15.521 1.00 22.48 ATOM 76 CG1 VAL C 14 -9.464 -18.849 -16.865 1.00 20.32 ATOM 77 CG2 VAL C 14 -10.799 -20.572 -15.522 1.00 20.86 ATOM 78 N LEU C 15 -8.971 -16.632 -14.105 1.00 22.38 ATOM 79 CA LEU C 15 -8.293 -15.357 -14.241 1.00 22.55 ATOM 80 C LEU C 15 -7.104 -15.250 -13.251 1.00 22.78 ATOM 81 O LEU C 15 -6.019 -14.806 -13.628 1.00 22.84 ATOM 82 CB LEU C 15 -9.297 -14.203 -14.132 1.00 22.60 ATOM 83 CG LEU C 15 -8.757 -12.781 -13.901 1.00 23.93 ATOM 84 CD1 LEU C 15 -8.101 -12.210 -15.163 1.00 26.02 ATOM 85 CD2 LEU C 15 -9.866 -11.888 -13.465 1.00 24.69 ATOM 86 N THR C 16 -7.312 -15.674 -12.004 1.00 22.96 ATOM 87 CA THR C 16 -6.249 -15.646 -10.999 1.00 22.51 ATOM 88 C THR C 16 -5.086 -16.557 -11.423 1.00 22.95 ATOM 89 O THR C 16 -3.919 -16.217 -11.238 1.00 21.97 ATOM 90 CB THR C 16 -6.780 -16.108 -9.657 1.00 22.32 ATOM 91 OG1 THR C 16 -7.721 -15.153 -9.160 1.00 22.87 ATOM 92 CG2 THR C 16 -5.678 -16.189 -8.677 1.00 23.24 ATOM 93 N LEU C 17 -5.420 -17.715 -11.991 1.00 23.14 ATOM 94 CA LEU C 17 -4.415 -18.664 -12.402 1.00 23.82 ATOM 95 C LEU C 17 -3.660 -18.133 -13.619 1.00 23.46 ATOM 96 O LEU C 17 -2.430 -18.311 -13.772 1.00 22.94 ATOM 97 CB LEU C 17 -5.052 -20.025 -12.701 1.00 24.70 ATOM 98 CG LEU C 17 -4.981 -21.162 -11.649 1.00 27.35 ATOM 99 CD1 LEU C 17 -5.162 -20.653 -10.186 1.00 27.16 ATOM 100 CD2 LEU C 17 -5.991 -22.353 -11.986 1.00 27.94 ATOM 101 N THR C 18 -4.396 -17.473 -14.497 1.00 22.85 ATOM 102 CA THR C 18 -3.768 -16.904 -15.671 1.00 22.45 ATOM 103 C THR C 18 -2.748 -15.865 -15.165 1.00 21.89 ATOM 104 O THR C 18 -1.569 -15.964 -15.487 1.00 21.81 ATOM 105 CB THR C 18 -4.817 -16.380 -16.735 1.00 22.44 ATOM 106 OG1 THR C 18 -5.712 -17.454 -17.096 1.00 21.11 ATOM 107 CG2 THR C 18 -4.114 -15.819 -17.970 1.00 20.49 ATOM 108 N ILE C 19 -3.202 -14.914 -14.349 1.00 21.08 ATOM 109 CA ILE C 19 -2.314 -13.864 -13.817 1.00 20.71 ATOM 110 C ILE C 19 -1.066 -14.466 -13.166 1.00 21.20 ATOM 111 O ILE C 19 0.059 -14.005 -13.399 1.00 21.48 ATOM 112 CB ILE C 19 -3.048 -12.902 -12.822 1.00 20.20 ATOM 113 CG1 ILE C 19 -4.058 -12.020 -13.576 1.00 20.48 ATOM 114 CG2 ILE C 19 -2.047 -12.016 -12.016 1.00 18.03 ATOM 115 CD1 ILE C 19 -5.204 -11.435 -12.711 1.00 18.23 ATOM 116 N LEU C 20 -1.271 -15.501 -12.359 1.00 21.29 ATOM 117 CA LEU C 20 -0.200 -16.101 -11.646 1.00 21.83 ATOM 118 C LEU C 20 0.759 -16.856 -12.558 1.00 22.39 ATOM 119 O LEU C 20 1.980 -16.764 -12.367 1.00 22.81 ATOM 120 CB LEU C 20 -0.734 -17.008 -10.555 1.00 22.60 ATOM 121 CG LEU C 20 -0.707 -16.548 -9.090 1.00 23.11 ATOM 122 CD1 LEU C 20 -0.689 -15.048 -8.928 1.00 21.50 ATOM 123 CD2 LEU C 20 -1.933 -17.178 -8.398 1.00 22.78 ATOM 124 N VAL C 21 0.233 -17.598 -13.533 1.00 22.48 ATOM 125 CA VAL C 21 1.106 -18.322 -14.464 1.00 22.18 ATOM 126 C VAL C 21 1.952 -17.266 -15.166 1.00 22.11 ATOM 127 O VAL C 21 3.174 -17.330 -15.112 1.00 21.95 ATOM 128 CB VAL C 21 0.333 -19.277 -15.428 1.00 22.52 ATOM 129 CG1 VAL C 21 1.144 -19.614 -16.641 1.00 21.19 ATOM 130 CG2 VAL C 21 -0.057 -20.589 -14.691 1.00 22.60 ATOM 131 N PHE C 22 1.295 -16.276 -15.773 1.00 21.94 ATOM 132 CA PHE C 22 1.982 -15.110 -16.370 1.00 21.67 ATOM 133 C PHE C 22 3.041 -14.455 -15.469 1.00 21.60 ATOM 134 O PHE C 22 4.187 -14.315 -15.880 1.00 22.17 ATOM 135 CB PHE C 22 0.976 -14.046 -16.814 1.00 21.68 ATOM 136 CG PHE C 22 0.440 -14.235 -18.216 1.00 22.99 ATOM 137 CD1 PHE C 22 -0.292 -15.375 -18.560 1.00 23.53 ATOM 138 CD2 PHE C 22 0.636 -13.240 -19.189 1.00 23.14 ATOM 139 CE1 PHE C 22 -0.810 -15.528 -19.847 1.00 24.35 ATOM 140 CE2 PHE C 22 0.144 -13.383 -20.485 1.00 22.45 ATOM 141 CZ PHE C 22 -0.588 -14.520 -20.819 1.00 24.39 ATOM 142 N TRP C 23 2.661 -14.066 -14.253 1.00 21.13 ATOM 143 CA TRP C 23 3.529 -13.227 -13.423 1.00 21.01 ATOM 144 C TRP C 23 4.770 -13.947 -12.887 1.00 21.93 ATOM 145 O TRP C 23 5.885 -13.545 -13.176 1.00 22.89 ATOM 146 CB TRP C 23 2.740 -12.605 -12.298 1.00 20.96 ATOM 147 CG TRP C 23 3.299 -11.297 -11.861 1.00 20.12 ATOM 148 CD1 TRP C 23 2.916 -10.060 -12.295 1.00 20.48 ATOM 149 CD2 TRP C 23 4.315 -11.076 -10.883 1.00 18.54 ATOM 150 NE1 TRP C 23 3.638 -9.079 -11.646 1.00 18.48 ATOM 151 CE2 TRP C 23 4.505 -9.679 -10.778 1.00 18.39 ATOM 152 CE3 TRP C 23 5.075 -11.918 -10.067 1.00 18.58 ATOM 153 CZ2 TRP C 23 5.442 -9.113 -9.912 1.00 18.28 ATOM 154 CZ3 TRP C 23 5.990 -11.339 -9.181 1.00 15.73 ATOM 155 CH2 TRP C 23 6.169 -9.962 -9.124 1.00 15.68 ATOM 156 N LEU C 24 4.570 -15.017 -12.117 1.00 22.00 ATOM 157 CA LEU C 24 5.664 -15.857 -11.667 1.00 21.02 ATOM 158 C LEU C 24 6.414 -16.443 -12.835 1.00 20.90 ATOM 159 O LEU C 24 7.603 -16.658 -12.746 1.00 20.99 ATOM 160 CB LEU C 24 5.138 -16.995 -10.826 1.00 21.00 ATOM 161 CG LEU C 24 4.866 -16.797 -9.347 1.00 21.64 ATOM 162 CD1 LEU C 24 4.940 -15.349 -8.894 1.00 21.79 ATOM 163 CD2 LEU C 24 3.513 -17.432 -9.013 1.00 20.66 ATOM 164 N GLY C 25 5.720 -16.717 -13.933 1.00 20.64 ATOM 165 CA GLY C 25 6.412 -17.059 -15.171 1.00 21.08 ATOM 166 C GLY C 25 7.503 -16.036 -15.501 1.00 21.67 ATOM 167 O GLY C 25 8.700 -16.382 -15.586 1.00 20.99 ATOM 168 N VAL C 26 7.099 -14.776 -15.665 1.00 21.95 ATOM 169 CA VAL C 26 8.050 -13.715 -16.037 1.00 22.61 ATOM 170 C VAL C 26 9.106 -13.405 -14.943 1.00 23.25 ATOM 171 O VAL C 26 10.307 -13.155 -15.218 1.00 23.26 ATOM 172 CB VAL C 26 7.352 -12.479 -16.616 1.00 22.42 ATOM 173 CG1 VAL C 26 8.341 -11.311 -16.766 1.00 21.47 ATOM 174 CG2 VAL C 26 6.668 -12.852 -17.991 1.00 21.87 ATOM 175 N TYR C 27 8.664 -13.451 -13.701 1.00 23.33 ATOM 176 CA TYR C 27 9.570 -13.241 -12.587 1.00 24.02 ATOM 177 C TYR C 27 10.740 -14.269 -12.675 1.00 23.73 ATOM 178 O TYR C 27 11.922 -13.952 -12.377 1.00 22.90 ATOM 179 CB TYR C 27 8.753 -13.410 -11.310 1.00 23.73 ATOM 180 CG TYR C 27 9.341 -12.827 -10.079 1.00 23.05 ATOM 181 CD1 TYR C 27 9.366 -11.439 -9.884 1.00 22.59 ATOM 182 CD2 TYR C 27 9.823 -13.665 -9.056 1.00 22.87 ATOM 183 CE1 TYR C 27 9.869 -10.881 -8.677 1.00 22.20 ATOM 184 CE2 TYR C 27 10.352 -13.127 -7.861 1.00 23.17 ATOM 185 CZ TYR C 27 10.364 -11.740 -7.679 1.00 24.28 ATOM 186 OH TYR C 27 10.890 -11.224 -6.504 1.00 28.58 ATOM 187 N ALA C 28 10.389 -15.487 -13.093 1.00 23.55 ATOM 188 CA ALA C 28 11.340 -16.599 -13.180 1.00 23.00 ATOM 189 C ALA C 28 12.274 -16.254 -14.302 1.00 22.92 ATOM 190 O ALA C 28 13.479 -16.415 -14.166 1.00 23.43 ATOM 191 CB ALA C 28 10.632 -17.932 -13.446 1.00 21.62 ATOM 192 N VAL C 29 11.722 -15.748 -15.401 1.00 22.69 ATOM 193 CA VAL C 29 12.548 -15.366 -16.557 1.00 22.74 ATOM 194 C VAL C 29 13.444 -14.156 -16.249 1.00 23.03 ATOM 195 O VAL C 29 14.594 -14.120 -16.667 1.00 23.32 ATOM 196 CB VAL C 29 11.730 -15.144 -17.882 1.00 22.79 ATOM 197 CG1 VAL C 29 12.613 -14.528 -18.964 1.00 20.29 ATOM 198 CG2 VAL C 29 11.133 -16.459 -18.354 1.00 21.43 ATOM 199 N PHE C 30 12.916 -13.184 -15.510 1.00 22.82 ATOM 200 CA PHE C 30 13.722 -12.036 -15.076 1.00 22.15 ATOM 201 C PHE C 30 14.966 -12.462 -14.309 1.00 22.33 ATOM 202 O PHE C 30 16.029 -11.898 -14.527 1.00 22.47 ATOM 203 CB PHE C 30 12.872 -11.027 -14.264 1.00 21.80 ATOM 204 CG PHE C 30 13.666 -9.897 -13.644 1.00 19.47 ATOM 205 CD1 PHE C 30 14.046 -8.782 -14.411 1.00 18.93 ATOM 206 CD2 PHE C 30 14.011 -9.937 -12.295 1.00 19.04 ATOM 207 CE1 PHE C 30 14.768 -7.745 -13.862 1.00 17.66 ATOM 208 CE2 PHE C 30 14.748 -8.909 -11.721 1.00 18.65 ATOM 209 CZ PHE C 30 15.119 -7.807 -12.505 1.00 20.44 TER