HEADER HYDROLASE 25-JUL-16 5GNW TITLE Crystal structure of Uracil DNA glycosylase-Uracil complex from TITLE 2 Bradyrhizobium diazoefficiens. COMPND MOL_ID: 1; COMPND 2 MOLECULE: Blr0248 protein; COMPND 3 CHAIN: C, D, E, F, A, B, G, H; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.87 ANGSTORMS DBREF 5GNW H 1 272 UNP Q89XR0 Q89XR0_BRAD 1 272 MODRES 5GNW MSE H 1 MET modified residue MODRES 5GNW MSE H 92 MET modified residue MODRES 5GNW MSE H 189 MET modified residue MODRES 5GNW MSE H 241 MET modified residue MODRES 5GNW MSE H 263 MET modified residue SEQRES 1 H 272 MET LEU THR GLU PHE ASP ALA GLY TYR GLY GLU GLN PRO SEQRES 2 H 272 PHE ARG ASP LEU CYS ALA ASN TYR PRO GLY ALA GLU ALA SEQRES 3 H 272 TYR ASP PRO HIS ASP PHE ARG ILE GLU TRP GLY PRO ILE SEQRES 4 H 272 PHE HIS ARG GLY ARG LEU ASP GLY SER ALA ARG VAL LEU SEQRES 5 H 272 ILE VAL GLY GLN ASP PRO ALA GLN HIS GLU THR ILE VAL SEQRES 6 H 272 ARG ARG ILE LEU VAL GLY THR ALA GLY ARG ARG THR GLN SEQRES 7 H 272 GLY PHE LEU ALA LYS LEU GLY ILE VAL GLN SER TYR VAL SEQRES 8 H 272 MET VAL ASN THR PHE LEU TYR SER VAL TYR GLY GLN SER SEQRES 9 H 272 GLY GLY SER LYS HIS LYS ASN GLU PRO GLY ILE VAL ASP SEQRES 10 H 272 TYR ARG ASN LYS TRP PHE LYS ALA VAL LEU GLY PRO GLY SEQRES 11 H 272 ASN ILE GLU ALA VAL VAL SER LEU GLY GLY LEU ALA ASP SEQRES 12 H 272 GLU ALA TRP LYS ALA TRP LEU LYS SER SER ASP GLY ALA SEQRES 13 H 272 ALA TYR LYS THR LEU ALA TYR GLN HIS ILE THR HIS PRO SEQRES 14 H 272 THR TRP PRO GLU SER SER ALA HIS ASP SER ALA THR GLN SEQRES 15 H 272 ALA ALA ASN THR LYS ILE MET LEU ALA LYS TRP ASN ALA SEQRES 16 H 272 ALA LEU ALA ALA LEU ALA PRO GLU VAL LYS HIS PRO ASP SEQRES 17 H 272 VAL PRO THR THR LEU VAL PRO TYR GLY ASP ALA PHE LYS SEQRES 18 H 272 PRO SER GLU LEU VAL ASP ILE ILE ALA LYS ASP LEU PRO SEQRES 19 H 272 ALA GLY LEU PRO ALA TRP MET ARG GLY ASP THR PRO TRP SEQRES 20 H 272 ALA VAL ARG GLN GLY VAL ASP ALA ALA ALA LYS ARG ARG SEQRES 21 H 272 THR ILE MET ILE THR ILE PRO ASP GLY VAL ILE PRO ATOM 1 N MSE D 1 -42.265 68.591 -0.994 1.00 30.00 ATOM 2 CA MSE D 1 -42.004 69.946 -1.421 1.00 30.00 ATOM 3 C MSE D 1 -40.552 70.014 -1.669 1.00 30.00 ATOM 4 O MSE D 1 -40.119 69.961 -2.814 1.00 30.00 ATOM 5 CB MSE D 1 -42.452 70.907 -0.307 1.00 20.00 ATOM 6 CG MSE D 1 -43.956 70.870 -0.035 1.00 20.00 ATOM 7 SE MSE D 1 -45.085 71.442 -1.561 1.00 20.00 ATOM 8 CE MSE D 1 -45.705 69.693 -2.202 1.00 20.00 ATOM 9 N LEU D 2 -39.805 70.130 -0.594 1.00 55.58 ATOM 10 CA LEU D 2 -38.388 70.098 -0.596 1.00 46.43 ATOM 11 C LEU D 2 -38.103 68.984 0.337 1.00 46.03 ATOM 12 O LEU D 2 -38.913 68.728 1.184 1.00 47.24 ATOM 13 CB LEU D 2 -37.923 71.390 0.019 1.00 43.96 ATOM 14 CG LEU D 2 -36.498 71.868 0.025 1.00 35.13 ATOM 15 CD1 LEU D 2 -36.112 72.394 -1.312 1.00 35.84 ATOM 16 CD2 LEU D 2 -36.365 72.965 1.038 1.00 37.77 ATOM 17 H LEU D 2 -40.149 70.284 0.180 1.00 66.69 ATOM 18 HA LEU D 2 -38.015 69.939 -1.482 1.00 55.71 ATOM 19 HB2 LEU D 2 -38.438 72.095 -0.395 1.00 52.75 ATOM 20 HB3 LEU D 2 -38.178 71.341 0.949 1.00 52.75 ATOM 21 HG LEU D 2 -35.908 71.148 0.264 1.00 42.16 ATOM 22 HD11 LEU D 2 -36.507 73.258 -1.419 1.00 43.01 ATOM 23 HD12 LEU D 2 -35.159 72.474 -1.342 1.00 43.01 ATOM 24 HD13 LEU D 2 -36.421 71.797 -1.994 1.00 43.01 ATOM 25 HD21 LEU D 2 -35.471 72.958 1.381 1.00 45.32 ATOM 26 HD22 LEU D 2 -36.552 73.809 0.621 1.00 45.32 ATOM 27 HD23 LEU D 2 -36.980 72.815 1.754 1.00 45.32 ATOM 28 N THR D 3 -36.965 68.327 0.199 1.00 47.25 ATOM 29 CA THR D 3 -36.536 67.306 1.105 1.00 28.37 ATOM 30 C THR D 3 -35.298 67.788 1.766 1.00 30.68 ATOM 31 O THR D 3 -34.362 68.144 1.119 1.00 38.04 ATOM 32 CB THR D 3 -36.255 66.045 0.332 1.00 25.46 ATOM 33 OG1 THR D 3 -37.478 65.513 -0.132 1.00 33.40 ATOM 34 CG2 THR D 3 -35.625 65.036 1.143 1.00 35.75 ATOM 35 H THR D 3 -36.415 68.453 -0.446 1.00 56.70 ATOM 36 HA THR D 3 -37.211 67.133 1.782 1.00 34.04 ATOM 37 HB THR D 3 -35.679 66.250 -0.408 1.00 30.55 ATOM 38 HG1 THR D 3 -38.007 65.464 0.490 1.00 40.08 ATOM 39 HG21 THR D 3 -35.903 65.144 2.050 1.00 42.90 ATOM 40 HG22 THR D 3 -35.861 64.160 0.838 1.00 42.90 ATOM 41 HG23 THR D 3 -34.677 65.149 1.097 1.00 42.90 ATOM 42 N GLU D 4 -35.307 67.722 3.076 1.00 34.03 ATOM 43 CA GLU D 4 -34.243 68.199 3.950 1.00 41.24 ATOM 44 C GLU D 4 -33.112 67.180 4.030 1.00 18.09 ATOM 45 O GLU D 4 -33.299 66.004 3.719 1.00 21.31 ATOM 46 CB GLU D 4 -34.790 68.480 5.350 1.00 40.48 ATOM 47 CG GLU D 4 -35.764 69.645 5.411 1.00 47.15 ATOM 48 CD GLU D 4 -36.342 69.851 6.796 1.00 53.69 ATOM 49 OE1 GLU D 4 -36.135 68.978 7.665 1.00 44.54 ATOM 50 OE2 GLU D 4 -37.005 70.886 7.017 1.00 60.01 ATOM 51 H GLU D 4 -35.977 67.382 3.495 1.00 40.84 ATOM 52 HA GLU D 4 -33.878 69.034 3.589 1.00 49.49 ATOM 53 HB2 GLU D 4 -35.254 67.689 5.667 1.00 48.58 ATOM 54 HB3 GLU D 4 -34.048 68.683 5.940 1.00 48.58 ATOM 55 HG2 GLU D 4 -35.300 70.458 5.155 1.00 56.58 ATOM 56 HG3 GLU D 4 -36.498 69.476 4.800 1.00 56.58 ATOM 57 N PHE D 5 -31.937 67.639 4.449 1.00 19.63 ATOM 58 CA PHE D 5 -30.788 66.777 4.570 1.00 15.19 ATOM 59 C PHE D 5 -29.692 67.437 5.362 1.00 13.60 ATOM 60 O PHE D 5 -29.648 68.608 5.478 1.00 18.42 ATOM 61 CB PHE D 5 -30.298 66.268 3.211 1.00 22.64 ATOM 62 CG PHE D 5 -29.493 67.232 2.432 1.00 14.93 ATOM 63 CD1 PHE D 5 -30.087 68.156 1.670 1.00 15.59 ATOM 64 CD2 PHE D 5 -28.171 67.168 2.437 1.00 15.75 ATOM 65 CE1 PHE D 5 -29.376 69.027 0.948 1.00 16.72 ATOM 66 CE2 PHE D 5 -27.434 68.047 1.719 1.00 20.36 ATOM 67 CZ PHE D 5 -28.042 68.971 0.967 1.00 17.58 ATOM 68 H PHE D 5 -31.793 68.450 4.667 1.00 23.56 ATOM 69 HA PHE D 5 -31.058 65.988 5.068 1.00 18.23 ATOM 70 HB2 PHE D 5 -29.731 65.505 3.364 1.00 27.16 ATOM 71 HB3 PHE D 5 -31.063 66.013 2.681 1.00 27.16 ATOM 72 HD1 PHE D 5 -31.006 68.206 1.647 1.00 18.71 ATOM 73 HD2 PHE D 5 -27.753 66.531 2.954 1.00 18.90 ATOM 74 HE1 PHE D 5 -29.806 69.663 0.436 1.00 20.06 ATOM 75 HE2 PHE D 5 -26.511 68.002 1.734 1.00 24.43 ATOM 76 HZ PHE D 5 -27.544 69.568 0.473 1.00 21.09 ATOM 77 N ASP D 6 -28.828 66.630 5.932 1.00 17.28 ATOM 78 CA ASP D 6 -27.644 67.094 6.653 1.00 21.26 ATOM 79 C ASP D 6 -26.474 67.241 5.692 1.00 14.33 ATOM 80 O ASP D 6 -25.934 66.247 5.208 1.00 22.84 ATOM 81 CB ASP D 6 -27.280 66.120 7.781 1.00 14.99 ATOM 82 CG ASP D 6 -26.106 66.595 8.612 1.00 11.61 ATOM 83 OD1 ASP D 6 -25.968 67.820 8.813 1.00 15.06 ATOM 84 OD2 ASP D 6 -25.324 65.739 9.075 1.00 11.86 ATOM 85 H ASP D 6 -28.889 65.774 5.878 1.00 20.74 ATOM 86 HA ASP D 6 -27.827 67.962 7.046 1.00 25.51 ATOM 87 HB2 ASP D 6 -28.043 66.019 8.370 1.00 17.99 ATOM 88 HB3 ASP D 6 -27.044 65.262 7.393 1.00 17.99 ATOM 89 N ALA D 7 -26.082 68.484 5.423 1.00 14.48 ATOM 90 CA ALA D 7 -24.995 68.764 4.485 1.00 20.07 ATOM 91 C ALA D 7 -23.700 68.115 4.946 1.00 18.56 ATOM 92 O ALA D 7 -22.801 67.865 4.144 1.00 19.58 ATOM 93 CB ALA D 7 -24.801 70.254 4.321 1.00 24.79 ATOM 94 H ALA D 7 -26.431 69.188 5.772 1.00 17.38 ATOM 95 HA ALA D 7 -25.224 68.394 3.618 1.00 24.09 ATOM 96 HB1 ALA D 7 -24.076 70.411 3.696 1.00 29.75 ATOM 97 HB2 ALA D 7 -25.622 70.644 3.982 1.00 29.75 ATOM 98 HB3 ALA D 7 -24.583 70.640 5.184 1.00 29.75 ATOM 99 N GLY D 8 -23.608 67.861 6.246 1.00 14.91 ATOM 100 CA GLY D 8 -22.497 67.116 6.797 1.00 18.92 ATOM 101 C GLY D 8 -21.544 67.951 7.623 1.00 21.94 ATOM 102 O GLY D 8 -21.939 68.594 8.597 1.00 19.67 ATOM 103 H GLY D 8 -24.184 68.114 6.832 1.00 17.89 ATOM 104 HA2 GLY D 8 -22.839 66.403 7.359 1.00 22.70 ATOM 105 HA3 GLY D 8 -21.993 66.713 6.071 1.00 22.70 ATOM 106 N TYR D 9 -20.280 67.938 7.216 1.00 14.44 ATOM 107 CA TYR D 9 -19.196 68.446 8.036 1.00 12.22 ATOM 108 C TYR D 9 -18.319 69.448 7.288 1.00 17.11 ATOM 109 O TYR D 9 -17.096 69.311 7.244 1.00 19.89 ATOM 110 CB TYR D 9 -18.365 67.269 8.530 1.00 13.66 ATOM 111 CG TYR D 9 -19.214 66.105 8.999 1.00 10.07 ATOM 112 CD1 TYR D 9 -19.694 66.054 10.298 1.00 7.94 ATOM 113 CD2 TYR D 9 -19.519 65.052 8.148 1.00 10.08 ATOM 114 CE1 TYR D 9 -20.461 64.994 10.735 1.00 10.70 ATOM 115 CE2 TYR D 9 -20.286 63.987 8.576 1.00 10.92 ATOM 116 CZ TYR D 9 -20.755 63.962 9.872 1.00 16.65 ATOM 117 OH TYR D 9 -21.522 62.902 10.306 1.00 15.18 ATOM 118 H TYR D 9 -20.024 67.633 6.453 1.00 17.32 ATOM 119 HA TYR D 9 -19.569 68.895 8.810 1.00 14.66 ATOM 120 HB2 TYR D 9 -17.801 66.955 7.806 1.00 16.39 ATOM 121 HB3 TYR D 9 -17.817 67.560 9.275 1.00 16.39 ATOM 122 HD1 TYR D 9 -19.499 66.748 10.885 1.00 9.53 ATOM 123 HD2 T