HEADER PHOTOSYNTHESIS 31-DEC-69 5GTH TITLE Native XFEL structure of photosystem II (dark dataset) COMPND MOL_ID: 18; COMPND 2 MOLECULE: Photosystem II reaction center protein Ycf12; COMPND 3 CHAIN: Y, y; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.50 ANGSTORMS DBREF 5GTH y 17 46 UNP D0VWR3 YCF12_THEVL 1 30 MODRES 5GTH FME 1 MET modified residue SEQRES 1 y 29 VAL ILE ALA GLN LEU THR MET ILE ALA MET ILE GLY ILE SEQRES 2 y 29 ALA GLY PRO MET ILE ILE PHE LEU LEU ALA VAL ARG ARG SEQRES 3 y 29 GLY ASN LEU ATOM 1 N VAL y 2 -5.023 -53.608 19.698 1.00110.15 ATOM 2 CA VAL y 2 -6.071 -52.757 19.147 1.00111.95 ATOM 3 C VAL y 2 -7.007 -52.316 20.262 1.00115.86 ATOM 4 O VAL y 2 -7.150 -51.123 20.534 1.00121.50 ATOM 5 CB VAL y 2 -6.885 -53.482 18.074 1.00107.79 ATOM 6 CG1 VAL y 2 -7.701 -52.477 17.282 1.00 96.54 ATOM 7 CG2 VAL y 2 -5.963 -54.262 17.154 1.00108.47 ATOM 8 N ILE y 3 -7.650 -53.289 20.902 1.00106.41 ATOM 9 CA ILE y 3 -8.372 -53.037 22.141 1.00113.30 ATOM 10 C ILE y 3 -7.328 -52.645 23.181 1.00124.12 ATOM 11 O ILE y 3 -7.612 -51.927 24.144 1.00131.30 ATOM 12 CB ILE y 3 -9.145 -54.291 22.619 1.00112.55 ATOM 13 CG1 ILE y 3 -10.168 -54.732 21.570 1.00111.93 ATOM 14 CG2 ILE y 3 -9.833 -54.044 23.966 1.00103.35 ATOM 15 CD1 ILE y 3 -10.995 -55.935 22.001 1.00110.92 ATOM 16 N ALA y 4 -6.104 -53.108 22.948 1.00121.01 ATOM 17 CA ALA y 4 -4.977 -52.820 23.818 1.00113.26 ATOM 18 C ALA y 4 -4.671 -51.329 23.833 1.00107.83 ATOM 19 O ALA y 4 -4.550 -50.728 24.898 1.00109.92 ATOM 20 CB ALA y 4 -3.758 -53.608 23.373 1.00108.01 ATOM 21 N GLN y 5 -4.544 -50.738 22.650 1.00109.30 ATOM 22 CA GLN y 5 -4.301 -49.301 22.531 1.00103.13 ATOM 23 C GLN y 5 -5.397 -48.445 23.178 1.00 92.59 ATOM 24 O GLN y 5 -5.095 -47.517 23.934 1.00 96.14 ATOM 25 CB GLN y 5 -4.122 -48.912 21.067 1.00 92.34 ATOM 26 CG GLN y 5 -2.799 -49.349 20.480 1.00 84.12 ATOM 27 CD GLN y 5 -2.832 -49.393 18.971 1.00 86.64 ATOM 28 OE1 GLN y 5 -3.902 -49.464 18.367 1.00 84.93 ATOM 29 NE2 GLN y 5 -1.660 -49.349 18.350 1.00 89.90 ATOM 30 N LEU y 6 -6.660 -48.752 22.883 1.00 83.40 ATOM 31 CA LEU y 6 -7.775 -48.020 23.484 1.00 80.12 ATOM 32 C LEU y 6 -7.811 -48.164 25.004 1.00 76.04 ATOM 33 O LEU y 6 -8.108 -47.206 25.712 1.00 79.22 ATOM 34 CB LEU y 6 -9.122 -48.461 22.903 1.00 78.45 ATOM 35 CG LEU y 6 -9.397 -48.294 21.413 1.00 77.76 ATOM 36 CD1 LEU y 6 -10.874 -48.521 21.132 1.00 78.60 ATOM 37 CD2 LEU y 6 -8.969 -46.926 20.957 1.00 71.70 ATOM 38 N THR y 7 -7.505 -49.358 25.504 1.00 69.43 ATOM 39 CA THR y 7 -7.463 -49.586 26.947 1.00 73.38 ATOM 40 C THR y 7 -6.353 -48.762 27.591 1.00 73.99 ATOM 41 O THR y 7 -6.570 -48.091 28.605 1.00 76.03 ATOM 42 CB THR y 7 -7.233 -51.061 27.264 1.00 67.05 ATOM 43 OG1 THR y 7 -8.147 -51.858 26.502 1.00 62.34 ATOM 44 CG2 THR y 7 -7.432 -51.315 28.750 1.00 67.64 ATOM 45 N MET y 8 -5.164 -48.823 26.993 1.00 78.20 ATOM 46 CA MET y 8 -4.014 -48.043 27.448 1.00 75.80 ATOM 47 C MET y 8 -4.334 -46.557 27.523 1.00 71.47 ATOM 48 O MET y 8 -4.115 -45.929 28.563 1.00 65.47 ATOM 49 CB MET y 8 -2.798 -48.261 26.539 1.00 74.27 ATOM 50 CG MET y 8 -2.226 -49.648 26.617 1.00 73.36 ATOM 51 SD MET y 8 -2.395 -50.236 28.300 1.00103.20 ATOM 52 CE MET y 8 -0.955 -49.500 29.064 1.00 81.64 ATOM 53 N ILE y 9 -4.840 -46.000 26.418 1.00 65.85 ATOM 54 CA ILE y 9 -5.204 -44.586 26.377 1.00 78.60 ATOM 55 C ILE y 9 -6.340 -44.264 27.356 1.00 76.81 ATOM 56 O ILE y 9 -6.454 -43.145 27.845 1.00 74.63 ATOM 57 CB ILE y 9 -5.531 -44.098 24.934 1.00 83.77 ATOM 58 CG1 ILE y 9 -5.657 -42.575 24.887 1.00 83.90 ATOM 59 CG2 ILE y 9 -6.802 -44.722 24.422 1.00 80.26 ATOM 60 CD1 ILE y 9 -4.415 -41.842 25.319 1.00 86.36 ATOM 61 N ALA y 10 -7.163 -45.255 27.671 1.00 70.84 ATOM 62 CA ALA y 10 -8.196 -45.050 28.675 1.00 68.83 ATOM 63 C ALA y 10 -7.600 -44.881 30.082 1.00 75.02 ATOM 64 O ALA y 10 -7.946 -43.933 30.793 1.00 69.93 ATOM 65 CB ALA y 10 -9.203 -46.180 28.640 1.00 67.82 ATOM 66 N MET y 11 -6.721 -45.798 30.493 1.00 67.63 ATOM 67 CA MET y 11 -6.073 -45.668 31.803 1.00 69.02 ATOM 68 C MET y 11 -5.248 -44.387 31.881 1.00 74.00 ATOM 69 O MET y 11 -5.386 -43.591 32.832 1.00 70.27 ATOM 70 CB MET y 11 -5.172 -46.866 32.105 1.00 75.41 ATOM 71 CG MET y 11 -5.914 -48.160 32.382 1.00 88.87 ATOM 72 SD MET y 11 -5.155 -49.553 31.522 1.00148.13 ATOM 73 CE MET y 11 -3.508 -49.538 32.235 1.00 84.10 ATOM 74 N ILE y 12 -4.390 -44.206 30.876 1.00 66.82 ATOM 75 CA ILE y 12 -3.507 -43.048 30.791 1.00 56.77 ATOM 76 C ILE y 12 -4.301 -41.743 30.839 1.00 59.47 ATOM 77 O ILE y 12 -4.007 -40.848 31.636 1.00 64.23 ATOM 78 CB ILE y 12 -2.638 -43.122 29.509 1.00 52.47 ATOM 79 CG1 ILE y 12 -1.537 -44.166 29.696 1.00 61.15 ATOM 80 CG2 ILE y 12 -2.011 -41.779 29.173 1.00 49.56 ATOM 81 CD1 ILE y 12 -0.571 -44.245 28.549 1.00 63.58 ATOM 82 N GLY y 13 -5.334 -41.663 30.012 1.00 52.27 ATOM 83 CA GLY y 13 -6.177 -40.490 29.943 1.00 51.44 ATOM 84 C GLY y 13 -6.972 -40.230 31.208 1.00 60.97 ATOM 85 O GLY y 13 -7.148 -39.082 31.597 1.00 67.90 ATOM 86 N ILE y 14 -7.472 -41.283 31.849 1.00 61.14 ATOM 87 CA ILE y 14 -8.267 -41.077 33.052 1.00 69.18 ATOM 88 C ILE y 14 -7.393 -40.693 34.235 1.00 73.00 ATOM 89 O ILE y 14 -7.885 -40.086 35.184 1.00 79.71 ATOM 90 CB ILE y 14 -9.158 -42.289 33.420 1.00 78.01 ATOM 91 CG1 ILE y 14 -10.442 -41.795 34.089 1.00 86.12 ATOM 92 CG2 ILE y 14 -8.452 -43.224 34.406 1.00 65.87 ATOM 93 CD1 ILE y 14 -11.184 -40.746 33.302 1.00 82.76 ATOM 94 N ALA y 15 -6.104 -41.032 34.169 1.00 67.52 ATOM 95 CA ALA y 15 -5.182 -40.742 35.271 1.00 56.59 ATOM 96 C ALA y 15 -5.188 -39.270 35.669 1.00 61.67 ATOM 97 O ALA y 15 -5.083 -38.937 36.854 1.00 62.94 ATOM 98 CB ALA y 15 -3.778 -41.171 34.915 1.00 52.78 ATOM 99 N GLY y 16 -5.319 -38.394 34.674 1.00 64.02 ATOM 100 CA GLY y 16 -5.237 -36.963 34.898 1.00 50.53 ATOM 101 C GLY y 16 -6.333 -36.430 35.795 1.00 59.46 ATOM 102 O GLY y 16 -6.052 -35.925 36.889 1.00 61.87 ATOM 103 N PRO y 17 -7.591 -36.527 35.334 1.00 51.68 ATOM 104 CA PRO y 17 -8.751 -36.111 36.133 1.00 58.93 ATOM 105 C PRO y 17 -8.820 -36.823 37.488 1.00 65.65 ATOM 106 O PRO y 17 -9.329 -36.240 38.451 1.00 68.93 ATOM 107 CB PRO y 17 -9.935 -36.491 35.241 1.00 60.80 ATOM 108 CG PRO y 17 -9.396 -36.354 33.843 1.00 51.62 ATOM 109 CD PRO y 17 -7.966 -36.844 33.942 1.00 51.80 ATOM 110 N MET y 18 -8.308 -38.054 37.549 1.00 66.51 ATOM 111 CA MET y 18 -8.230 -38.834 38.787 1.00 54.87 ATOM 112 C MET y 18 -7.433 -38.118 39.868 1.00 61.91 ATOM 113 O MET y 18 -7.811 -38.127 41.042 1.00 70.01 ATOM 114 CB MET y 18 -7.582 -40.191 38.516 1.00 59.08 ATOM 115 CG MET y 18 -7.426 -41.089 39.752 1.00 70.66 ATOM 116 SD MET y 18 -8.925 -41.965 40.230 1.00119.45 ATOM 117 CE MET y 18 -9.179 -42.996 38.786 1.00113.40 ATOM 118 N ILE y 19 -6.308 -37.529 39.475 1.00 67.35 ATOM 119 CA ILE y 19 -5.491 -36.754 40.403 1.00 69.57 ATOM 120 C ILE y 19 -6.276 -35.542 40.893 1.00 64.76 ATOM 121 O ILE y 19 -6.277 -35.242 42.086 1.00 73.43 ATOM 122 CB ILE y 19 -4.150 -36.317 39.770 1.00 69.91 ATOM 123 CG1 ILE y 19 -3.316 -37.546 39.407 1.00 78.59 ATOM 124 CG2 ILE y 19 -3.359 -35.425 40.723 1.00 57.18 ATOM 125 CD1 ILE y 19 -2.066 -37.223 38.624 1.00 76.37 ATOM 126 N ILE y 20 -6.945 -34.847 39.977 1.00 56.27 ATOM 127 CA ILE y 20 -7.765 -33.706 40.366 1.00 55.43 ATOM 128 C ILE y 20 -8.913 -34.125 41.274 1.00 67.61 ATOM 129 O ILE y 20 -9.182 -33.490 42.304 1.00 62.49 ATOM 130 CB ILE y 20 -8.376 -33.013 39.165 1.00 63.12 ATOM 131 CG1 ILE y 20 -7.270 -32.439 38.266 1.00 63.79 ATOM 132 CG2 ILE y 20 -9.365 -31.956 39.630 1.00 51.65 ATOM 133 CD1 ILE y 20 -6.088 -31.844 39.040 1.00 60.79 ATOM 134 N PHE y 21 -9.580 -35.206 40.883 1.00 63.85 ATOM 135 CA PHE y 21 -10.744 -35.695 41.611 1.00 64.38 ATOM 136 C PHE y 21 -10.375 -36.080 43.041 1.00 63.41 ATOM 137 O PHE y 21 -11.046 -35.673 43.988 1.00 64.28 ATOM 138 CB PHE y 21 -11.363 -36.893 40.880 1.00 70.11 ATOM 139 CG PHE y 21 -12.540 -37.497 41.591 1.00 77.24 ATOM 140 CD1 PHE y 21 -13.794 -36.904 41.508 1.00 75.90 ATOM 141 CD2 PHE y 21 -12.391 -38.654 42.354 1.00 78.26 ATOM 142 CE1 PHE y 21 -14.879 -37.455 42.169 1.00 78.06 ATOM 143 CE2 PHE y 21 -13.470 -39.212 43.021 1.00 70.88 ATOM 144 CZ PHE y 21 -14.715 -38.615 42.930 1.00 73.77 ATOM 145 N LEU y 22 -9.307 -36.861 43.184 1.00 68.54 ATOM 146 CA LEU y 22 -8.826 -37.301 44.491 1.00 67.35 ATOM 147 C LEU y 22 -8.426 -36.114 45.355 1.00 69.01 ATOM 148 O LEU y 22 -8.711 -36.080 46.545 1.00 65.29 ATOM 149 CB LEU y 22 -7.656 -38.270 44.318 1.00 73.70 ATOM 150 CG LEU y 22 -8.039 -39.647 43.763 1.00 72.73 ATOM 151 CD1 LEU y 22 -6.809 -40.449 43.382 1.00 73.67 ATOM 152 CD2 LEU y 22 -8.854 -40.410 44.790 1.00 58.83 ATOM 153 N LEU y 23 -7.776 -35.131 44.744 1.00 70.58 ATOM 154 CA LEU y 23 -7.412 -33.903 45.447 1.00 67.58 ATOM 155 C LEU y 23 -8.622 -33.035 45.796 1.00 69.01 ATOM 156 O LEU y 23 -8.621 -32.369 46.827 1.00 72.97 ATOM 157 CB LEU y 23 -6.385 -33.095 44.651 1.00 56.99 ATOM 158 CG LEU y 23 -4.972 -33.674 44.744 1.00 59.78 ATOM 159 CD1 LEU y 23 -4.020 -32.904 43.844 1.00 62.09 ATOM 160 CD2 LEU y 23 -4.491 -33.688 46.202 1.00 61.07 ATOM 161 N ALA y 24 -9.638 -33.018 44.936 1.00 70.94 ATOM 162 CA ALA y 24 -10.847 -32.238 45.212 1.00 61.30 ATOM 163 C ALA y 24 -11.643 -32.820 46.373 1.00 73.01 ATOM 164 O ALA y 24 -12.179 -32.090 47.209 1.00 81.93 ATOM 165 CB ALA y 24 -11.719 -32.146 43.991 1.00 54.97 ATOM 166 N VAL y 25 -11.700 -34.144 46.429 1.00 64.58 ATOM 167 CA VAL y 25 -12.446 -34.819 47.470 1.00 70.08 ATOM 168 C VAL y 25 -11.805 -34.588 48.841 1.00 81.96 ATOM 169 O VAL y 25 -12.478 -34.175 49.792 1.00 77.35 ATOM 170 CB VAL y 25 -12.542 -36.327 47.186 1.00 68.74 ATOM 171 CG1 VAL y 25 -13.129 -37.049 48.375 1.00 80.79 ATOM 172 CG2 VAL y 25 -13.383 -36.573 45.945 1.00 69.23 ATOM 173 N ARG y 26 -10.500 -34.834 48.930 1.00 81.24 ATOM 174 CA ARG y 26 -9.787 -34.677 50.189 1.00 72.10 ATOM 175 C ARG y 26 -9.247 -33.260 50.390 1.00 85.90 ATOM 176 O ARG y 26 -8.269 -33.065 51.116 1.00 91.76 ATOM 177 CB ARG y 26 -8.666 -35.714 50.309 1.00 69.85 ATOM 178 CG ARG y 26 -7.547 -35.578 49.304 1.00 79.79 ATOM 179 CD ARG y 26 -6.786 -36.893 49.175 1.00 88.88 ATOM 180 NE ARG y 26 -5.738 -37.039 50.183 1.00 96.71 ATOM 181 CZ ARG y 26 -5.036 -38.153 50.384 1.00109.81 ATOM 182 NH1 ARG y 26 -4.097 -38.185 51.323 1.00114.45 ATOM 183 NH2 ARG y 26 -5.273 -39.237 49.654 1.00110.20 ATOM 184 N ARG y 27 -9.902 -32.286 49.753 1.00 82.27 ATOM 185 CA ARG y 27 -9.564 -30.859 49.865 1.00 85.62 ATOM 186 C ARG y 27 -8.062 -30.570 49.923 1.00 83.31 ATOM 187 O ARG y 27 -7.555 -29.998 50.894 1.00 79.27 ATOM 188 CB ARG y 27 -10.289 -30.212 51.050 1.00 87.25 ATOM 189 CG ARG y 27 -11.804 -30.346 50.993 1.00 94.33 ATOM 190 CD ARG y 27 -12.454 -29.805 52.256 1.00107.84 ATOM 191 NE ARG y 27 -13.759 -30.413 52.512 1.00119.23 ATOM 192 CZ ARG y 27 -14.527 -30.129 53.562 1.00123.57 ATOM 193 NH1 ARG y 27 -14.125 -29.239 54.460 1.00125.48 ATOM 194 NH2 ARG y 27 -15.699 -30.733 53.715 1.00122.12 ATOM 195 N GLY y 28 -7.360 -30.984 48.874 1.00 71.73 ATOM 196 CA GLY y 28 -5.933 -30.758 48.763 1.00 62.27 ATOM 197 C GLY y 28 -5.616 -29.396 48.179 1.00 64.89 ATOM 198 O GLY y 28 -6.510 -28.636 47.799 1.00 56.02 ATOM 199 N ASN y 29 -4.327 -29.093 48.100 1.00 63.95 ATOM 200 CA ASN y 29 -3.867 -27.793 47.638 1.00 67.62 ATOM 201 C ASN y 29 -3.997 -27.574 46.114 1.00 71.16 ATOM 202 O ASN y 29 -3.016 -27.258 45.428 1.00 67.20 ATOM 203 CB ASN y 29 -2.426 -27.563 48.105 1.00 68.29 ATOM 204 CG ASN y 29 -2.294 -26.354 49.004 1.00 83.56 ATOM 205 OD1 ASN y 29 -2.534 -25.219 48.579 1.00 84.67 ATOM 206 ND2 ASN y 29 -1.913 -26.586 50.256 1.00 93.45 ATOM 207 N LEU y 30 -5.210 -27.738 45.591 1.00 55.31 ATOM 208 CA LEU y 30 -5.482 -27.432 44.193 1.00 68.31 ATOM 209 C LEU y 30 -5.302 -25.936 43.908 1.00 70.60 ATOM 210 O LEU y 30 -5.096 -25.527 42.768 1.00 74.08 ATOM 211 CB LEU y 30 -6.896 -27.870 43.817 1.00 52.87 ATOM 212 CG LEU y 30 -7.113 -29.330 43.435 1.00 59.37 ATOM 213 CD1 LEU y 30 -8.585 -29.563 43.152 1.00 68.91 ATOM 214 CD2 LEU y 30 -6.259 -29.729 42.225 1.00 52.37 ATOM 215 OXT LEU y 30 -5.355 -25.089 44.803 1.00 67.08 TER