HEADER LYASE 31-DEC-69 5O5C TITLE The crystal structure of DfoJ, the desferrioxamine biosynthetic TITLE 2 pathway lysine decarboxylase from the fire blight disease pathogen TITLE 3 Erwinia amylovora COMPND MOL_ID: 1; COMPND 2 MOLECULE: Putative decarboxylase involved in desferrioxamine COMPND 3 biosynthesis; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 EC: 4.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 1; COMPND 8 Putative decarboxylase involved in desferrioxamine COMPND 9 biosynthesis; COMPND 10 CHAIN: A, B, C, D, E, F; COMPND 11 EC: 4.1.1.-; COMPND 12 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.10 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 79 REMARK 465 LEU A 80 REMARK 465 HIS A 354 DBREF 5O5C A 1 517 UNP D4I245 D4I245_ERWA 1 517 DBREF 5O5C B 1 517 UNP D4I245 D4I245_ERWA 1 517 SEQRES 1 A 307 MET THR GLU THR VAL LYS GLY VAL GLU LYS PRO PHE SER SEQRES 2 A 307 GLY ILE LEU PRO HIS GLU LEU ALA ARG GLU PHE SER GLY SEQRES 3 A 307 VAL ASP LEU ASP GLN SER LEU GLY SER ASN GLU ALA ALA SEQRES 4 A 307 LEU GLU GLU LEU LYS LYS LEU TYR LEU ARG ASP ALA VAL SEQRES 5 A 307 TRP PHE HIS HIS PRO LYS TYR VAL ALA HIS LEU ASN CYS SEQRES 6 A 307 PRO VAL VAL LEU PRO SER LEU LEU ALA GLU GLN ILE MET SEQRES 7 A 307 ALA ALA VAL ASN SER SER VAL ASP THR TRP ASP GLN SER SEQRES 8 A 307 ALA GLY GLY THR LEU ILE GLU GLN LYS VAL ILE ASP TRP SEQRES 9 A 307 THR LEU SER ARG ILE GLY LEU PRO ALA GLY ALA ASP GLY SEQRES 10 A 307 ILE PHE THR SER GLY GLY THR GLN SER ASN LEU MET ALA SEQRES 11 A 307 MET LEU LEU ALA ARG ASP SER TRP CYS ALA ALA HIS HIS SEQRES 12 A 307 PRO GLY HIS LEU ILE LYS HIS ARG GLY LEU PRO HIS ASP SEQRES 13 A 307 ALA ALA LYS TRP ARG VAL PHE THR SER LYS LEU SER HIS SEQRES 14 A 307 PHE SER ILE GLN LYS SER MET ALA ILE LEU GLY LEU GLY SEQRES 15 A 307 TYR ASP ALA VAL ILE PRO VAL ASP TYR ASP GLU ARG TYR SEQRES 16 A 307 ARG MET ASP VAL ASP CYS LEU LYS GLN GLU VAL GLN ARG SEQRES 17 A 307 CYS LEU GLN GLN GLY LEU ILE PRO VAL ALA VAL VAL ALA SEQRES 18 A 307 THR SER GLY THR THR ASP PHE GLY SER ILE ASP PRO LEU SEQRES 19 A 307 GLY ALA ILE SER GLU LEU CYS LYS HIS HIS GLY MET TRP SEQRES 20 A 307 MET HIS VAL ASP ALA ALA TYR GLY CYS GLY LEU LEU VAL SEQRES 21 A 307 SER GLU SER HIS ARG PRO ARG LEU ALA GLY ILE GLU LYS SEQRES 22 A 307 ALA ASP SER VAL THR VAL ASP TYR HIS LYS SER PHE PHE SEQRES 23 A 307 GLN THR VAL SER CYS GLY ALA PHE PHE VAL ARG ASP LYS SEQRES 24 A 307 HIS HIS LEU SER HIS VAL THR HIS SEQRES 1 A 20 GLN THR THR ARG ARG PHE ASP ALA LEU LYS MET TRP LEU SEQRES 2 A 20 THR LEU ARG VAL SER GLY PRO ATOM 1 N GLN A 378 68.695 188.543 -3.879 1.00 20.76 ATOM 2 CA GLN A 378 68.053 187.567 -3.056 1.00 21.27 ATOM 3 C GLN A 378 68.561 186.220 -3.546 1.00 19.37 ATOM 4 O GLN A 378 69.112 186.131 -4.639 1.00 19.92 ATOM 5 CB GLN A 378 66.552 187.623 -3.228 1.00 22.00 ATOM 6 CG GLN A 378 65.884 188.918 -2.956 1.00 23.97 ATOM 7 CD GLN A 378 64.390 188.834 -3.182 1.00 24.28 ATOM 8 OE1 GLN A 378 63.920 189.052 -4.280 1.00 29.70 ATOM 9 NE2 GLN A 378 63.657 188.470 -2.171 1.00 20.99 ATOM 10 N THR A 379 68.434 185.203 -2.716 1.00 21.55 ATOM 11 CA THR A 379 68.689 183.780 -3.102 1.00 19.85 ATOM 12 C THR A 379 67.306 183.087 -3.228 1.00 21.54 ATOM 13 O THR A 379 66.640 183.359 -4.175 1.00 19.88 ATOM 14 CB THR A 379 69.677 183.072 -2.194 1.00 21.28 ATOM 15 OG1 THR A 379 70.856 183.873 -1.965 1.00 23.79 ATOM 16 CG2 THR A 379 70.111 181.707 -2.823 1.00 21.04 ATOM 17 N THR A 380 66.858 182.224 -2.283 1.00 24.72 ATOM 18 CA THR A 380 65.510 181.665 -2.309 1.00 21.16 ATOM 19 C THR A 380 64.476 182.793 -2.558 1.00 22.42 ATOM 20 O THR A 380 64.480 183.842 -1.858 1.00 19.35 ATOM 21 CB THR A 380 65.149 180.947 -0.986 1.00 22.21 ATOM 22 OG1 THR A 380 66.039 179.840 -0.714 1.00 16.45 ATOM 23 CG2 THR A 380 63.727 180.477 -1.008 1.00 23.86 ATOM 24 N ARG A 381 63.617 182.599 -3.561 1.00 18.33 ATOM 25 CA ARG A 381 62.641 183.656 -3.937 1.00 18.42 ATOM 26 C ARG A 381 61.403 182.998 -4.553 1.00 15.98 ATOM 27 O ARG A 381 61.486 182.121 -5.394 1.00 17.30 ATOM 28 CB ARG A 381 63.262 184.662 -4.900 1.00 21.02 ATOM 29 CG ARG A 381 62.357 185.816 -5.333 1.00 23.96 ATOM 30 CD ARG A 381 62.957 186.714 -6.411 1.00 29.77 ATOM 31 NE ARG A 381 62.760 186.204 -7.789 1.00 31.76 ATOM 32 CZ ARG A 381 63.695 186.084 -8.722 1.00 34.98 ATOM 33 NH1 ARG A 381 64.941 186.480 -8.526 1.00 47.34 ATOM 34 NH2 ARG A 381 63.390 185.570 -9.883 1.00 40.91 ATOM 35 N ARG A 382 60.255 183.427 -4.130 1.00 17.09 ATOM 36 CA ARG A 382 58.994 182.847 -4.549 1.00 19.50 ATOM 37 C ARG A 382 58.582 183.349 -5.912 1.00 19.30 ATOM 38 O ARG A 382 59.104 184.346 -6.389 1.00 21.74 ATOM 39 CB ARG A 382 57.893 183.103 -3.536 1.00 20.06 ATOM 40 CG ARG A 382 57.232 184.462 -3.448 1.00 23.87 ATOM 41 CD ARG A 382 56.565 184.555 -2.071 1.00 28.78 ATOM 42 NE ARG A 382 55.437 185.365 -2.182 1.00 33.58 ATOM 43 CZ ARG A 382 54.166 184.999 -2.171 1.00 35.42 ATOM 44 NH1 ARG A 382 53.740 183.774 -1.895 1.00 36.38 ATOM 45 NH2 ARG A 382 53.299 185.974 -2.347 1.00 42.72 ATOM 46 N PHE A 383 57.637 182.631 -6.486 1.00 18.11 ATOM 47 CA PHE A 383 57.118 182.815 -7.842 1.00 18.67 ATOM 48 C PHE A 383 56.067 183.922 -7.981 1.00 18.61 ATOM 49 O PHE A 383 54.918 183.686 -8.449 1.00 19.40 ATOM 50 CB PHE A 383 56.590 181.468 -8.324 1.00 21.53 ATOM 51 CG PHE A 383 56.276 181.404 -9.801 1.00 24.38 ATOM 52 CD1 PHE A 383 56.927 182.214 -10.755 1.00 25.16 ATOM 53 CD2 PHE A 383 55.337 180.521 -10.226 1.00 28.39 ATOM 54 CE1 PHE A 383 56.560 182.162 -12.096 1.00 27.13 ATOM 55 CE2 PHE A 383 54.996 180.418 -11.575 1.00 31.65 ATOM 56 CZ PHE A 383 55.604 181.253 -12.505 1.00 29.84 ATOM 57 N ASP A 384 56.444 185.138 -7.587 1.00 18.09 ATOM 58 CA ASP A 384 55.512 186.301 -7.640 1.00 19.32 ATOM 59 C ASP A 384 55.082 186.666 -9.062 1.00 19.26 ATOM 60 O ASP A 384 54.028 187.303 -9.289 1.00 22.94 ATOM 61 CB ASP A 384 56.113 187.514 -6.933 1.00 20.67 ATOM 62 CG ASP A 384 56.168 187.343 -5.400 1.00 19.95 ATOM 63 OD1 ASP A 384 55.227 186.777 -4.842 1.00 23.11 ATOM 64 OD2 ASP A 384 57.131 187.798 -4.755 1.00 21.83 ATOM 65 N ALA A 385 55.933 186.326 -10.017 1.00 20.29 ATOM 66 CA ALA A 385 55.642 186.532 -11.420 1.00 19.30 ATOM 67 C ALA A 385 54.387 185.779 -11.915 1.00 19.37 ATOM 68 O ALA A 385 53.818 186.146 -12.932 1.00 21.10 ATOM 69 CB ALA A 385 56.807 186.080 -12.216 1.00 20.45 ATOM 70 N LEU A 386 53.996 184.693 -11.260 1.00 19.10 ATOM 71 CA LEU A 386 52.738 184.004 -11.635 1.00 20.58 ATOM 72 C LEU A 386 51.522 184.902 -11.523 1.00 22.72 ATOM 73 O LEU A 386 50.540 184.713 -12.274 1.00 25.31 ATOM 74 CB LEU A 386 52.505 182.731 -10.856 1.00 19.31 ATOM 75 CG LEU A 386 51.309 181.867 -11.261 1.00 19.23 ATOM 76 CD1 LEU A 386 51.572 181.189 -12.599 1.00 18.69 ATOM 77 CD2 LEU A 386 51.016 180.888 -10.169 1.00 20.58 ATOM 78 N LYS A 387 51.561 185.856 -10.598 1.00 22.83 ATOM 79 CA LYS A 387 50.431 186.738 -10.363 1.00 23.79 ATOM 80 C LYS A 387 50.202 187.625 -11.583 1.00 23.18 ATOM 81 O LYS A 387 49.053 187.814 -12.066 1.00 21.84 ATOM 82 CB LYS A 387 50.676 187.616 -9.130 1.00 25.99 ATOM 83 CG LYS A 387 50.328 186.979 -7.831 1.00 32.92 ATOM 84 CD LYS A 387 50.701 187.870 -6.630 1.00 36.75 ATOM 85 CE LYS A 387 52.090 187.612 -6.093 1.00 37.62 ATOM 86 NZ LYS A 387 52.219 188.172 -4.699 1.00 42.85 ATOM 87 N MET A 388 51.309 188.149 -12.083 1.00 21.79 ATOM 88 CA MET A 388 51.277 188.996 -13.266 1.00 22.56 ATOM 89 C MET A 388 50.964 188.192 -14.556 1.00 26.33 ATOM 90 O MET A 388 50.175 188.664 -15.413 1.00 23.33 ATOM 91 CB MET A 388 52.555 189.821 -13.366 1.00 21.60 ATOM 92 CG MET A 388 52.515 191.106 -12.529 1.00 22.11 ATOM 93 SD MET A 388 51.149 192.228 -13.030 1.00 22.01 ATOM 94 CE MET A 388 51.779 192.775 -14.584 1.00 22.03 ATOM 95 N TRP A 389 51.538 186.979 -14.643 1.00 25.12 ATOM 96 CA TRP A 389 51.271 186.027 -15.708 1.00 24.84 ATOM 97 C TRP A 389 49.805 185.658 -15.757 1.00 24.91 ATOM 98 O TRP A 389 49.166 185.797 -16.794 1.00 23.50 ATOM 99 CB TRP A 389 52.126 184.753 -15.504 1.00 28.65 ATOM 100 CG TRP A 389 51.790 183.624 -16.461 1.00 32.44 ATOM 101 CD1 TRP A 389 50.822 182.688 -16.313 1.00 37.70 ATOM 102 CD2 TRP A 389 52.395 183.370 -17.692 1.00 34.11 ATOM 103 NE1 TRP A 389 50.785 181.848 -17.388 1.00 37.64 ATOM 104 CE2 TRP A 389 51.753 182.249 -18.255 1.00 37.59 ATOM 105 CE3 TRP A 389 53.434 183.973 -18.389 1.00 34.02 ATOM 106 CZ2 TRP A 389 52.120 181.722 -19.462 1.00 36.98 ATOM 107 CZ3 TRP A 389 53.789 183.452 -19.557 1.00 35.78 ATOM 108 CH2 TRP A 389 53.141 182.340 -20.101 1.00 39.11 ATOM 109 N LEU A 390 49.246 185.218 -14.629 1.00 22.90 ATOM 110 CA LEU A 390 47.873 184.860 -14.647 1.00 24.08 ATOM 111 C LEU A 390 46.970 186.081 -14.878 1.00 26.82 ATOM 112 O LEU A 390 46.015 185.967 -15.637 1.00 25.48 ATOM 113 CB LEU A 390 47.468 184.014 -13.473 1.00 25.58 ATOM 114 CG LEU A 390 48.142 182.625 -13.472 1.00 26.38 ATOM 115 CD1 LEU A 390 47.681 181.887 -12.235 1.00 24.49 ATOM 116 CD2 LEU A 390 47.825 181.793 -14.693 1.00 27.54 ATOM 117 N THR A 391 47.298 187.245 -14.320 1.00 27.83 ATOM 118 CA THR A 391 46.446 188.398 -14.517 1.00 26.47 ATOM 119 C THR A 391 46.352 188.692 -16.018 1.00 26.52 ATOM 120 O THR A 391 45.259 188.808 -16.521 1.00 24.06 ATOM 121 CB THR A 391 46.819 189.627 -13.636 1.00 28.89 ATOM 122 OG1 THR A 391 46.692 189.287 -12.242 1.00 28.48 ATOM 123 CG2 THR A 391 45.860 190.848 -13.915 1.00 25.62 ATOM 124 N LEU A 392 47.489 188.767 -16.711 1.00 26.18 ATOM 125 CA LEU A 392 47.556 189.022 -18.144 1.00 26.90 ATOM 126 C LEU A 392 46.880 187.934 -18.996 1.00 27.22 ATOM 127 O LEU A 392 46.099 188.245 -19.855 1.00 22.61 ATOM 128 CB LEU A 392 49.017 189.222 -18.593 1.00 26.95 ATOM 129 CG LEU A 392 49.684 190.467 -18.017 1.00 26.23 ATOM 130 CD1 LEU A 392 51.190 190.451 -18.211 1.00 29.65 ATOM 131 CD2 LEU A 392 49.067 191.756 -18.536 1.00 25.47 ATOM 132 N ARG A 393 47.190 186.670 -18.738 1.00 31.01 ATOM 133 CA ARG A 393 46.491 185.538 -19.371 1.00 33.41 ATOM 134 C ARG A 393 44.971 185.632 -19.239 1.00 33.25 ATOM 135 O ARG A 393 44.281 185.531 -20.249 1.00 31.59 ATOM 136 CB ARG A 393 46.960 184.200 -18.800 1.00 40.97 ATOM 137 CG ARG A 393 48.077 183.483 -19.526 1.00 52.46 ATOM 138 CD ARG A 393 49.204 184.371 -20.063 1.00 58.22 ATOM 139 NE ARG A 393 48.875 184.967 -21.363 1.00 63.85 ATOM 140 CZ ARG A 393 48.793 184.319 -22.528 1.00 61.93 ATOM 141 NH1 ARG A 393 49.018 183.012 -22.611 1.00 62.42 ATOM 142 NH2 ARG A 393 48.470 184.997 -23.624 1.00 60.08 ATOM 143 N VAL A 394 44.471 185.804 -18.004 1.00 29.42 ATOM 144 CA VAL A 394 43.041 185.824 -17.688 1.00 29.67 ATOM 145 C VAL A 394 42.271 187.116 -18.017 1.00 31.99 ATOM 146 O VAL A 394 41.266 187.070 -18.745 1.00 27.58 ATOM 147 CB VAL A 394 42.770 185.479 -16.207 1.00 26.96 ATOM 148 CG1 VAL A 394 41.289 185.614 -15.857 1.00 30.33 ATOM 149 CG2 VAL A 394 43.208 184.080 -15.925 1.00 25.27 ATOM 150 N SER A 395 42.705 188.236 -17.447 1.00 30.49 ATOM 151 CA SER A 395 42.081 189.534 -17.687 1.00 32.75 ATOM 152 C SER A 395 42.806 190.201 -18.867 1.00 35.78 ATOM 153 O SER A 395 43.966 189.892 -19.142 1.00 40.42 ATOM 154 CB SER A 395 42.230 190.435 -16.459 1.00 31.38 ATOM 155 OG SER A 395 41.996 189.803 -15.221 1.00 31.48 ATOM 156 N GLY A 396 42.218 191.159 -19.550 1.00 32.30 ATOM 157 CA GLY A 396 43.116 191.925 -20.469 1.00 35.66 ATOM 158 C GLY A 396 44.257 192.675 -19.730 1.00 31.83 ATOM 159 O GLY A 396 44.009 193.243 -18.675 1.00 32.21 ATOM 160 N PRO A 397 45.495 192.727 -20.287 1.00 34.48 ATOM 161 CA PRO A 397 46.319 193.936 -20.016 1.00 37.67 ATOM 162 C PRO A 397 45.512 195.222 -20.169 1.00 38.48 ATOM 163 O PRO A 397 45.729 196.197 -19.438 1.00 39.36 ATOM 164 CB PRO A 397 47.388 193.897 -21.117 1.00 37.57 ATOM 165 CG PRO A 397 46.919 192.857 -22.072 1.00 35.34 ATOM 166 CD PRO A 397 46.177 191.863 -21.254 1.00 33.30 ATOM 167 N1 PLP A 59.117 204.531 -4.612 1.00 42.59 ATOM 168 C2 PLP A 57.881 205.094 -4.625 1.00 38.66 ATOM 169 C2A PLP A 57.555 206.243 -5.530 1.00 38.46 ATOM 170 C3 PLP A 56.810 204.554 -3.779 1.00 40.19 ATOM 171 O3 PLP A 55.580 205.142 -3.807 1.00 40.99 ATOM 172 C4 PLP A 57.150 203.407 -2.899 1.00 39.52 ATOM 173 C4A PLP A 56.127 202.792 -2.018 1.00 40.13 ATOM 174 C5 PLP A 58.548 202.883 -2.967 1.00 41.78 ATOM 175 C6 PLP A 59.459 203.476 -3.846 1.00 38.77 ATOM 176 C5A PLP A 58.962 201.695 -2.116 1.00 41.75 ATOM 177 O4P PLP A 58.298 200.514 -2.581 1.00 42.46 ATOM 178 P PLP A 57.826 199.342 -1.574 1.00 40.88 ATOM 179 O1P PLP A 57.085 198.408 -2.509 1.00 39.15 ATOM 180 O2P PLP A 59.139 198.797 -1.061 1.00 35.94 ATOM 181 O3P PLP A 56.943 199.987 -0.556 1.00 41.49 ATOM 182 N1 PLP A 72.419 180.929 5.125 1.00 35.64 ATOM 183 C2 PLP A 72.459 179.583 5.042 1.00 36.73 ATOM 184 C2A PLP A 73.177 178.775 6.081 1.00 35.63 ATOM 185 C3 PLP A 71.770 178.923 3.924 1.00 37.96 ATOM 186 O3 PLP A 71.774 177.556 3.783 1.00 41.45 ATOM 187 C4 PLP A 71.071 179.818 2.970 1.00 37.02 ATOM 188 C4A PLP A 70.403 179.280 1.765 1.00 39.68 ATOM 189 C5 PLP A 71.104 181.268 3.170 1.00 36.93 ATOM 190 C6 PLP A 71.816 181.751 4.250 1.00 36.16 ATOM 191 C5A PLP A 70.404 182.180 2.188 1.00 37.44 ATOM 192 O4P PLP A 69.009 181.959 2.451 1.00 39.86 ATOM 193 P PLP A 67.760 182.483 1.571 1.00 38.91 ATOM 194 O1P PLP A 67.787 181.633 0.341 1.00 40.94 ATOM 195 O2P PLP A 66.558 182.148 2.417 1.00 40.13 ATOM 196 O3P PLP A 67.894 183.935 1.276 1.00 36.33 TER