HEADER LYASE 31-DEC-69 5O5C TITLE The crystal structure of DfoJ, the desferrioxamine biosynthetic TITLE 2 pathway lysine decarboxylase from the fire blight disease pathogen TITLE 3 Erwinia amylovora COMPND MOL_ID: 1; COMPND 2 MOLECULE: Putative decarboxylase involved in desferrioxamine COMPND 3 biosynthesis; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 EC: 4.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 1; COMPND 8 Putative decarboxylase involved in desferrioxamine COMPND 9 biosynthesis; COMPND 10 CHAIN: A, B, C, D, E, F; COMPND 11 EC: 4.1.1.-; COMPND 12 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.10 ANGSTORMS REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 79 REMARK 465 LEU C 80 REMARK 465 HIS C 354 DBREF 5O5C C 1 517 UNP D4I245 D4I245_ERWA 1 517 DBREF 5O5C D 1 517 UNP D4I245 D4I245_ERWA 1 517 SEQRES 1 C 307 MET THR GLU THR VAL LYS GLY VAL GLU LYS PRO PHE SER SEQRES 2 C 307 GLY ILE LEU PRO HIS GLU LEU ALA ARG GLU PHE SER GLY SEQRES 3 C 307 VAL ASP LEU ASP GLN SER LEU GLY SER ASN GLU ALA ALA SEQRES 4 C 307 LEU GLU GLU LEU LYS LYS LEU TYR LEU ARG ASP ALA VAL SEQRES 5 C 307 TRP PHE HIS HIS PRO LYS TYR VAL ALA HIS LEU ASN CYS SEQRES 6 C 307 PRO VAL VAL LEU PRO SER LEU LEU ALA GLU GLN ILE MET SEQRES 7 C 307 ALA ALA VAL ASN SER SER VAL ASP THR TRP ASP GLN SER SEQRES 8 C 307 ALA GLY GLY THR LEU ILE GLU GLN LYS VAL ILE ASP TRP SEQRES 9 C 307 THR LEU SER ARG ILE GLY LEU PRO ALA GLY ALA ASP GLY SEQRES 10 C 307 ILE PHE THR SER GLY GLY THR GLN SER ASN LEU MET ALA SEQRES 11 C 307 MET LEU LEU ALA ARG ASP SER TRP CYS ALA ALA HIS HIS SEQRES 12 C 307 PRO GLY HIS LEU ILE LYS HIS ARG GLY LEU PRO HIS ASP SEQRES 13 C 307 ALA ALA LYS TRP ARG VAL PHE THR SER LYS LEU SER HIS SEQRES 14 C 307 PHE SER ILE GLN LYS SER MET ALA ILE LEU GLY LEU GLY SEQRES 15 C 307 TYR ASP ALA VAL ILE PRO VAL ASP TYR ASP GLU ARG TYR SEQRES 16 C 307 ARG MET ASP VAL ASP CYS LEU LYS GLN GLU VAL GLN ARG SEQRES 17 C 307 CYS LEU GLN GLN GLY LEU ILE PRO VAL ALA VAL VAL ALA SEQRES 18 C 307 THR SER GLY THR THR ASP PHE GLY SER ILE ASP PRO LEU SEQRES 19 C 307 GLY ALA ILE SER GLU LEU CYS LYS HIS HIS GLY MET TRP SEQRES 20 C 307 MET HIS VAL ASP ALA ALA TYR GLY CYS GLY LEU LEU VAL SEQRES 21 C 307 SER GLU SER HIS ARG PRO ARG LEU ALA GLY ILE GLU LYS SEQRES 22 C 307 ALA ASP SER VAL THR VAL ASP TYR HIS LYS SER PHE PHE SEQRES 23 C 307 GLN THR VAL SER CYS GLY ALA PHE PHE VAL ARG ASP LYS SEQRES 24 C 307 HIS HIS LEU SER HIS VAL THR HIS SEQRES 1 C 20 GLN THR THR ARG ARG PHE ASP ALA LEU LYS MET TRP LEU SEQRES 2 C 20 THR LEU ARG VAL SER GLY PRO ATOM 1 N GLN C 378 130.894 158.414 14.254 1.00 26.52 ATOM 2 CA GLN C 378 130.298 159.347 15.232 1.00 27.02 ATOM 3 C GLN C 378 128.881 159.552 14.755 1.00 25.03 ATOM 4 O GLN C 378 128.578 159.233 13.613 1.00 23.97 ATOM 5 CB GLN C 378 131.019 160.714 15.189 1.00 26.95 ATOM 6 CG GLN C 378 132.434 160.676 15.667 1.00 29.87 ATOM 7 CD GLN C 378 133.162 161.995 15.595 1.00 29.85 ATOM 8 OE1 GLN C 378 133.237 162.724 16.567 1.00 37.34 ATOM 9 NE2 GLN C 378 133.688 162.308 14.447 1.00 28.56 ATOM 10 N THR C 379 128.013 160.084 15.601 1.00 23.05 ATOM 11 CA THR C 379 126.697 160.600 15.144 1.00 22.32 ATOM 12 C THR C 379 126.718 162.148 15.263 1.00 23.34 ATOM 13 O THR C 379 127.215 162.801 14.318 1.00 21.56 ATOM 14 CB THR C 379 125.525 159.893 15.821 1.00 22.68 ATOM 15 OG1 THR C 379 125.724 158.477 15.807 1.00 20.15 ATOM 16 CG2 THR C 379 124.195 160.212 15.112 1.00 26.16 ATOM 17 N THR C 380 126.266 162.745 16.378 1.00 23.89 ATOM 18 CA THR C 380 126.432 164.206 16.592 1.00 25.25 ATOM 19 C THR C 380 127.878 164.606 16.343 1.00 24.90 ATOM 20 O THR C 380 128.806 163.957 16.791 1.00 29.04 ATOM 21 CB THR C 380 126.045 164.686 18.026 1.00 25.59 ATOM 22 OG1 THR C 380 124.707 164.335 18.311 1.00 24.08 ATOM 23 CG2 THR C 380 126.099 166.202 18.126 1.00 26.44 ATOM 24 N ARG C 381 128.082 165.647 15.568 1.00 25.49 ATOM 25 CA ARG C 381 129.442 165.996 15.167 1.00 23.47 ATOM 26 C ARG C 381 129.531 167.463 14.812 1.00 20.59 ATOM 27 O ARG C 381 128.696 167.929 14.040 1.00 20.97 ATOM 28 CB ARG C 381 129.797 165.159 13.949 1.00 24.88 ATOM 29 CG ARG C 381 131.255 164.856 13.858 1.00 30.73 ATOM 30 CD ARG C 381 131.548 164.111 12.594 1.00 33.20 ATOM 31 NE ARG C 381 131.997 165.095 11.665 1.00 42.17 ATOM 32 CZ ARG C 381 131.660 165.206 10.395 1.00 40.29 ATOM 33 NH1 ARG C 381 130.828 164.382 9.778 1.00 49.39 ATOM 34 NH2 ARG C 381 132.210 166.180 9.745 1.00 38.83 ATOM 35 N ARG C 382 130.547 168.162 15.306 1.00 18.35 ATOM 36 CA ARG C 382 130.676 169.611 15.086 1.00 20.03 ATOM 37 C ARG C 382 131.237 169.997 13.739 1.00 18.96 ATOM 38 O ARG C 382 131.802 169.184 13.053 1.00 19.06 ATOM 39 CB ARG C 382 131.370 170.332 16.244 1.00 18.34 ATOM 40 CG ARG C 382 132.778 170.007 16.621 1.00 19.80 ATOM 41 CD ARG C 382 133.090 170.652 17.986 1.00 23.02 ATOM 42 NE ARG C 382 134.283 171.363 17.792 1.00 29.19 ATOM 43 CZ ARG C 382 134.514 172.644 17.896 1.00 25.66 ATOM 44 NH1 ARG C 382 133.744 173.524 18.522 1.00 32.16 ATOM 45 NH2 ARG C 382 135.682 172.964 17.507 1.00 30.33 ATOM 46 N PHE C 383 131.063 171.264 13.361 1.00 20.17 ATOM 47 CA PHE C 383 131.404 171.755 12.022 1.00 20.81 ATOM 48 C PHE C 383 132.910 172.063 11.907 1.00 20.15 ATOM 49 O PHE C 383 133.314 173.169 11.518 1.00 17.81 ATOM 50 CB PHE C 383 130.570 173.012 11.764 1.00 26.65 ATOM 51 CG PHE C 383 130.636 173.564 10.349 1.00 28.67 ATOM 52 CD1 PHE C 383 131.185 172.867 9.285 1.00 30.79 ATOM 53 CD2 PHE C 383 130.097 174.801 10.109 1.00 31.87 ATOM 54 CE1 PHE C 383 131.212 173.409 8.021 1.00 34.88 ATOM 55 CE2 PHE C 383 130.104 175.355 8.843 1.00 34.19 ATOM 56 CZ PHE C 383 130.664 174.659 7.797 1.00 35.12 ATOM 57 N ASP C 384 133.765 171.085 12.225 1.00 18.09 ATOM 58 CA ASP C 384 135.183 171.379 12.231 1.00 18.08 ATOM 59 C ASP C 384 135.691 171.850 10.862 1.00 20.44 ATOM 60 O ASP C 384 136.640 172.635 10.814 1.00 20.86 ATOM 61 CB ASP C 384 135.977 170.225 12.755 1.00 17.88 ATOM 62 CG ASP C 384 135.820 170.015 14.302 1.00 16.53 ATOM 63 OD1 ASP C 384 135.714 170.964 15.091 1.00 18.41 ATOM 64 OD2 ASP C 384 135.850 168.855 14.701 1.00 15.60 ATOM 65 N ALA C 385 135.021 171.445 9.776 1.00 22.34 ATOM 66 CA ALA C 385 135.403 171.848 8.435 1.00 24.48 ATOM 67 C ALA C 385 135.377 173.360 8.157 1.00 24.53 ATOM 68 O ALA C 385 136.089 173.826 7.279 1.00 25.89 ATOM 69 CB ALA C 385 134.569 171.095 7.410 1.00 25.25 ATOM 70 N LEU C 386 134.604 174.116 8.937 1.00 27.37 ATOM 71 CA LEU C 386 134.563 175.558 8.830 1.00 25.45 ATOM 72 C LEU C 386 135.930 176.130 9.023 1.00 29.42 ATOM 73 O LEU C 386 136.289 177.119 8.356 1.00 27.83 ATOM 74 CB LEU C 386 133.616 176.169 9.831 1.00 27.58 ATOM 75 CG LEU C 386 133.410 177.690 9.710 1.00 27.02 ATOM 76 CD1 LEU C 386 132.870 178.113 8.348 1.00 25.83 ATOM 77 CD2 LEU C 386 132.480 178.157 10.803 1.00 28.83 ATOM 78 N LYS C 387 136.706 175.481 9.891 1.00 28.44 ATOM 79 CA LYS C 387 138.052 175.927 10.197 1.00 31.55 ATOM 80 C LYS C 387 138.963 175.885 8.980 1.00 28.88 ATOM 81 O LYS C 387 139.550 176.886 8.617 1.00 30.74 ATOM 82 CB LYS C 387 138.653 175.104 11.329 1.00 32.45 ATOM 83 CG LYS C 387 138.393 175.661 12.689 1.00 37.04 ATOM 84 CD LYS C 387 138.989 174.784 13.797 1.00 43.31 ATOM 85 CE LYS C 387 138.198 173.491 13.990 1.00 41.38 ATOM 86 NZ LYS C 387 138.523 172.846 15.286 1.00 43.22 ATOM 87 N MET C 388 139.065 174.734 8.346 1.00 26.35 ATOM 88 CA MET C 388 139.784 174.659 7.091 1.00 24.73 ATOM 89 C MET C 388 139.157 175.539 6.009 1.00 24.34 ATOM 90 O MET C 388 139.886 176.255 5.335 1.00 24.65 ATOM 91 CB MET C 388 139.899 173.227 6.639 1.00 23.53 ATOM 92 CG MET C 388 140.976 172.498 7.404 1.00 24.81 ATOM 93 SD MET C 388 142.538 173.123 6.797 1.00 23.33 ATOM 94 CE MET C 388 143.321 173.930 8.033 1.00 30.69 ATOM 95 N TRP C 389 137.827 175.520 5.894 1.00 26.59 ATOM 96 CA TRP C 389 137.114 176.402 4.931 1.00 27.00 ATOM 97 C TRP C 389 137.544 177.876 5.080 1.00 25.49 ATOM 98 O TRP C 389 138.074 178.409 4.135 1.00 24.51 ATOM 99 CB TRP C 389 135.601 176.283 5.008 1.00 29.08 ATOM 100 CG TRP C 389 134.951 176.481 3.683 1.00 33.98 ATOM 101 CD1 TRP C 389 134.853 175.558 2.656 1.00 35.78 ATOM 102 CD2 TRP C 389 134.318 177.643 3.222 1.00 32.84 ATOM 103 NE1 TRP C 389 134.207 176.088 1.591 1.00 32.68 ATOM 104 CE2 TRP C 389 133.840 177.365 1.911 1.00 37.51 ATOM 105 CE3 TRP C 389 134.087 178.885 3.781 1.00 30.16 ATOM 106 CZ2 TRP C 389 133.169 178.294 1.159 1.00 35.95 ATOM 107 CZ3 TRP C 389 133.448 179.793 3.057 1.00 36.13 ATOM 108 CH2 TRP C 389 132.973 179.507 1.743 1.00 41.09 ATOM 109 N LEU C 390 137.365 178.485 6.256 1.00 24.56 ATOM 110 CA LEU C 390 137.730 179.913 6.468 1.00 23.75 ATOM 111 C LEU C 390 139.214 180.191 6.389 1.00 24.38 ATOM 112 O LEU C 390 139.606 181.291 5.996 1.00 21.46 ATOM 113 CB LEU C 390 137.186 180.464 7.784 1.00 23.94 ATOM 114 CG LEU C 390 135.655 180.649 7.848 1.00 23.34 ATOM 115 CD1 LEU C 390 135.238 181.116 9.185 1.00 23.14 ATOM 116 CD2 LEU C 390 135.143 181.654 6.832 1.00 24.29 ATOM 117 N THR C 391 140.043 179.207 6.736 1.00 22.75 ATOM 118 CA THR C 391 141.479 179.304 6.485 1.00 21.89 ATOM 119 C THR C 391 141.799 179.416 4.988 1.00 23.54 ATOM 120 O THR C 391 142.637 180.209 4.580 1.00 25.26 ATOM 121 CB THR C 391 142.210 178.146 7.134 1.00 21.85 ATOM 122 OG1 THR C 391 141.984 178.169 8.563 1.00 18.05 ATOM 123 CG2 THR C 391 143.676 178.201 6.824 1.00 20.29 ATOM 124 N LEU C 392 141.139 178.618 4.164 1.00 23.10 ATOM 125 CA LEU C 392 141.374 178.693 2.747 1.00 21.64 ATOM 126 C LEU C 392 140.714 179.963 2.183 1.00 22.60 ATOM 127 O LEU C 392 141.330 180.713 1.428 1.00 23.19 ATOM 128 CB LEU C 392 140.959 177.410 2.065 1.00 19.95 ATOM 129 CG LEU C 392 141.754 176.185 2.473 1.00 20.16 ATOM 130 CD1 LEU C 392 140.989 174.928 2.191 1.00 20.17 ATOM 131 CD2 LEU C 392 143.097 176.135 1.780 1.00 21.93 ATOM 132 N ARG C 393 139.524 180.304 2.632 1.00 23.60 ATOM 133 CA ARG C 393 138.936 181.530 2.106 1.00 24.51 ATOM 134 C ARG C 393 139.760 182.771 2.381 1.00 27.47 ATOM 135 O ARG C 393 139.950 183.618 1.500 1.00 26.00 ATOM 136 CB ARG C 393 137.532 181.725 2.622 1.00 24.95 ATOM 137 CG ARG C 393 136.490 180.765 2.166 1.00 25.20 ATOM 138 CD ARG C 393 136.640 180.216 0.768 1.00 28.18 ATOM 139 NE ARG C 393 135.912 180.966 -0.230 1.00 28.23 ATOM 140 CZ ARG C 393 136.337 181.138 -1.479 1.00 30.49 ATOM 141 NH1 ARG C 393 137.562 180.743 -1.899 1.00 27.13 ATOM 142 NH2 ARG C 393 135.568 181.790 -2.284 1.00 32.95 ATOM 143 N VAL C 394 140.245 182.886 3.609 1.00 30.35 ATOM 144 CA VAL C 394 140.924 184.074 4.063 1.00 29.29 ATOM 145 C VAL C 394 142.378 184.127 3.659 1.00 30.90 ATOM 146 O VAL C 394 142.742 185.006 2.905 1.00 29.18 ATOM 147 CB VAL C 394 140.826 184.227 5.580 1.00 26.62 ATOM 148 CG1 VAL C 394 141.685 185.392 6.063 1.00 26.91 ATOM 149 CG2 VAL C 394 139.391 184.466 5.944 1.00 29.23 ATOM 150 N SER C 395 143.186 183.219 4.231 1.00 31.09 ATOM 151 CA SER C 395 144.604 183.101 3.975 1.00 32.48 ATOM 152 C SER C 395 144.760 182.285 2.672 1.00 35.89 ATOM 153 O SER C 395 143.862 181.524 2.284 1.00 33.61 ATOM 154 CB SER C 395 145.274 182.346 5.131 1.00 33.58 ATOM 155 OG SER C 395 144.823 182.781 6.405 1.00 28.35 ATOM 156 N GLY C 396 145.866 182.398 1.965 1.00 34.90 ATOM 157 CA GLY C 396 146.042 181.401 0.847 1.00 38.51 ATOM 158 C GLY C 396 146.202 179.940 1.334 1.00 33.31 ATOM 159 O GLY C 396 146.629 179.732 2.434 1.00 32.21 ATOM 160 N PRO C 397 145.850 178.910 0.517 1.00 37.54 ATOM 161 CA PRO C 397 146.510 177.601 0.658 1.00 33.88 ATOM 162 C PRO C 397 148.028 177.740 0.564 1.00 37.08 ATOM 163 O PRO C 397 148.794 177.123 1.321 1.00 36.31 ATOM 164 CB PRO C 397 145.988 176.794 -0.547 1.00 35.81 ATOM 165 CG PRO C 397 144.995 177.653 -1.252 1.00 32.70 ATOM 166 CD PRO C 397 144.722 178.856 -0.427 1.00 34.35 ATOM 167 N1 PLP C 149.256 158.900 13.458 1.00 40.64 ATOM 168 C2 PLP C 150.361 159.662 13.506 1.00 41.76 ATOM 169 C2A PLP C 151.491 159.358 12.562 1.00 44.42 ATOM 170 C3 PLP C 150.427 160.783 14.481 1.00 40.08 ATOM 171 O3 PLP C 151.512 161.576 14.574 1.00 41.84 ATOM 172 C4 PLP C 149.253 161.005 15.358 1.00 40.04 ATOM 173 C4A PLP C 149.227 162.095 16.369 1.00 42.06 ATOM 174 C5 PLP C 148.102 160.095 15.181 1.00 35.93 ATOM 175 C6 PLP C 148.177 159.080 14.230 1.00 38.15 ATOM 176 C5A PLP C 146.872 160.244 16.034 1.00 39.42 ATOM 177 O4P PLP C 146.204 161.472 15.747 1.00 36.53 ATOM 178 P PLP C 145.298 162.203 16.857 1.00 37.36 ATOM 179 O1P PLP C 144.704 163.389 16.114 1.00 29.19 ATOM 180 O2P PLP C 144.288 161.193 17.303 1.00 41.64 ATOM 181 O3P PLP C 146.190 162.613 17.984 1.00 35.95 ATOM 182 N1 PLP C 122.221 157.533 23.152 1.00 41.23 ATOM 183 C2 PLP C 121.014 158.124 23.087 1.00 42.48 ATOM 184 C2A PLP C 119.892 157.747 24.020 1.00 43.03 ATOM 185 C3 PLP C 120.827 159.190 22.094 1.00 46.19 ATOM 186 O3 PLP C 119.625 159.816 22.016 1.00 47.77 ATOM 187 C4 PLP C 121.986 159.524 21.217 1.00 46.19 ATOM 188 C4A PLP C 121.902 160.539 20.140 1.00 48.96 ATOM 189 C5 PLP C 123.241 158.802 21.394 1.00 42.23 ATOM 190 C6 PLP C 123.285 157.824 22.380 1.00 44.93 ATOM 191 C5A PLP C 124.429 159.162 20.532 1.00 42.87 ATOM 192 O4P PLP C 124.850 160.480 20.936 1.00 41.86 ATOM 193 P PLP C 125.781 161.467 20.052 1.00 42.23 ATOM 194 O1P PLP C 124.912 162.025 18.928 1.00 42.33 ATOM 195 O2P PLP C 126.886 160.584 19.560 1.00 44.01 ATOM 196 O3P PLP C 126.239 162.537 21.031 1.00 39.77 TER