HEADER VIRAL PROTEIN/IMMUNE SYSTEM 17-OCT-16 5TOJ TITLE Crystal structure of the RSV F glycoprotein in complex with the TITLE 2 neutralizing single-domain antibody F-VHH-4 COMPND MOL_ID: 2; COMPND 2 MOLECULE: Single-domain antibody F-VHH-4; COMPND 3 CHAIN: D, E, F; COMPND 4 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 3.30 ANGSTORMS DBREF 5TOJ D 1 119 PDB 5TOJ 5TOJ 1 119 SEQRES 1 D 126 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 126 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 126 PHE THR LEU ASP TYR TYR TYR ILE GLY TRP PHE ARG GLN SEQRES 4 D 126 ALA PRO GLY LYS GLU ARG GLU ALA VAL SER CYS ILE SER SEQRES 5 D 126 GLY SER SER GLY SER THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 D 126 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 126 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 126 ALA VAL TYR TYR CYS ALA THR ILE ARG SER SER SER TRP SEQRES 9 D 126 GLY GLY CYS VAL HIS TYR GLY MET ASP TYR TRP GLY LYS SEQRES 10 D 126 GLY THR GLN VAL THR VAL SER SER HIS ATOM 1 N SER C 514 72.164 -42.019 184.368 1.00 74.48 ATOM 2 CA SER C 514 73.593 -41.802 184.183 1.00 78.49 ATOM 3 C SER C 514 74.217 -41.092 185.379 1.00 83.09 ATOM 4 O SER C 514 75.389 -41.298 185.692 1.00 88.87 ATOM 5 CB SER C 514 73.853 -40.987 182.916 1.00 82.95 ATOM 6 OG SER C 514 73.856 -39.599 183.200 1.00 87.87 ATOM 7 N ALA C 515 73.429 -40.271 186.059 1.00 82.25 ATOM 8 CA ALA C 515 73.938 -39.515 187.194 1.00 79.12 ATOM 9 C ALA C 515 73.989 -40.347 188.479 1.00 78.68 ATOM 10 O ALA C 515 73.713 -39.830 189.560 1.00 78.27 ATOM 11 CB ALA C 515 73.093 -38.264 187.409 1.00 75.93 ATOM 12 N ILE C 516 74.299 -41.637 188.375 1.00 80.25 ATOM 13 CA ILE C 516 74.492 -42.436 189.585 1.00 87.07 ATOM 14 C ILE C 516 75.919 -42.353 190.166 1.00 91.60 ATOM 15 O ILE C 516 76.148 -41.685 191.172 1.00 94.51 ATOM 16 CB ILE C 516 74.136 -43.930 189.332 1.00 64.23 ATOM 17 CG1 ILE C 516 72.627 -44.102 189.168 1.00 63.93 ATOM 18 CG2 ILE C 516 74.615 -44.823 190.477 1.00 63.71 ATOM 19 CD1 ILE C 516 71.840 -43.812 190.421 1.00 64.23 ATOM 20 N GLY C 517 76.875 -43.005 189.509 1.00 89.78 ATOM 21 CA GLY C 517 78.252 -43.067 189.978 1.00 88.84 ATOM 22 C GLY C 517 79.198 -41.876 190.027 1.00 87.78 ATOM 23 O GLY C 517 80.285 -41.993 190.594 1.00 87.58 ATOM 24 N GLY C 518 78.818 -40.730 189.473 1.00 86.18 ATOM 25 CA GLY C 518 79.772 -39.637 189.399 1.00 86.02 ATOM 26 C GLY C 518 79.863 -38.625 190.522 1.00 85.18 ATOM 27 O GLY C 518 80.841 -37.885 190.601 1.00 89.83 ATOM 28 N TYR C 519 78.864 -38.577 191.390 1.00 80.75 ATOM 29 CA TYR C 519 78.842 -37.557 192.432 1.00 78.89 ATOM 30 C TYR C 519 79.273 -38.126 193.779 1.00 78.61 ATOM 31 O TYR C 519 79.078 -39.313 194.041 1.00 79.77 ATOM 32 CB TYR C 519 77.457 -36.927 192.485 1.00 78.15 ATOM 33 CG TYR C 519 77.141 -36.261 191.171 1.00 78.82 ATOM 34 CD1 TYR C 519 77.902 -35.192 190.713 1.00 80.77 ATOM 35 CD2 TYR C 519 76.136 -36.748 190.350 1.00 78.82 ATOM 36 CE1 TYR C 519 77.636 -34.594 189.495 1.00 82.22 ATOM 37 CE2 TYR C 519 75.865 -36.159 189.129 1.00 80.64 ATOM 38 CZ TYR C 519 76.616 -35.083 188.706 1.00 81.27 ATOM 39 OH TYR C 519 76.343 -34.499 187.492 1.00 80.92 ATOM 40 N ILE C 520 79.847 -37.292 194.643 1.00 77.17 ATOM 41 CA ILE C 520 80.395 -37.814 195.889 1.00 72.50 ATOM 42 C ILE C 520 79.342 -37.860 196.989 1.00 67.03 ATOM 43 O ILE C 520 78.601 -36.898 197.207 1.00 66.07 ATOM 44 CB ILE C 520 81.597 -36.978 196.371 1.00 73.95 ATOM 45 CG1 ILE C 520 81.196 -35.516 196.543 1.00 78.61 ATOM 46 CG2 ILE C 520 82.731 -37.056 195.372 1.00 73.88 ATOM 47 CD1 ILE C 520 82.323 -34.648 197.003 1.00 83.44 ATOM 48 N PRO C 521 79.273 -39.004 197.680 1.00 65.39 ATOM 49 CA PRO C 521 78.375 -39.273 198.805 1.00 68.35 ATOM 50 C PRO C 521 78.867 -38.644 200.096 1.00 71.82 ATOM 51 O PRO C 521 79.935 -38.038 200.114 1.00 77.00 ATOM 52 CB PRO C 521 78.409 -40.795 198.919 1.00 72.06 ATOM 53 CG PRO C 521 79.772 -41.156 198.427 1.00 71.57 ATOM 54 CD PRO C 521 80.071 -40.189 197.319 1.00 67.21 ATOM 55 N GLU C 522 78.098 -38.792 201.166 1.00 71.17 ATOM 56 CA GLU C 522 78.499 -38.245 202.450 1.00 73.59 ATOM 57 C GLU C 522 79.665 -39.070 202.995 1.00 75.42 ATOM 58 O GLU C 522 79.778 -40.261 202.704 1.00 79.13 ATOM 59 CB GLU C 522 77.319 -38.238 203.429 1.00 75.62 ATOM 60 CG GLU C 522 77.647 -37.700 204.818 1.00 77.35 ATOM 61 CD GLU C 522 78.109 -36.253 204.804 1.00 77.81 ATOM 62 OE1 GLU C 522 77.258 -35.355 204.624 1.00 80.61 ATOM 63 OE2 GLU C 522 79.328 -36.016 204.951 1.00 74.42 ATOM 64 N ALA C 523 80.549 -38.430 203.753 1.00 72.03 ATOM 65 CA ALA C 523 81.586 -39.148 204.477 1.00 68.67 ATOM 66 C ALA C 523 81.020 -39.615 205.818 1.00 69.10 ATOM 67 O ALA C 523 79.998 -39.100 206.273 1.00 68.85 ATOM 68 CB ALA C 523 82.815 -38.268 204.679 1.00 65.90 ATOM 69 N PRO C 524 81.665 -40.607 206.444 1.00 68.75 ATOM 70 CA PRO C 524 81.248 -41.079 207.767 1.00 68.54 ATOM 71 C PRO C 524 81.038 -39.969 208.793 1.00 69.68 ATOM 72 O PRO C 524 81.713 -38.942 208.769 1.00 67.33 ATOM 73 CB PRO C 524 82.414 -41.971 208.200 1.00 68.34 ATOM 74 CG PRO C 524 83.148 -42.339 206.918 1.00 69.09 ATOM 75 CD PRO C 524 82.532 -41.587 205.772 1.00 68.01 ATOM 76 N ARG C 525 80.082 -40.184 209.685 1.00 78.64 ATOM 77 CA ARG C 525 79.794 -39.217 210.734 1.00 84.46 ATOM 78 C ARG C 525 80.305 -39.721 212.078 1.00 91.62 ATOM 79 O ARG C 525 79.516 -39.963 212.990 1.00 95.72 ATOM 80 CB ARG C 525 78.294 -38.927 210.820 1.00 84.86 ATOM 81 CG ARG C 525 77.669 -38.420 209.538 1.00 83.73 ATOM 82 CD ARG C 525 76.217 -38.044 209.768 1.00 89.06 ATOM 83 NE ARG C 525 75.731 -37.138 208.733 1.00 93.85 ATOM 84 CZ ARG C 525 75.221 -35.932 208.971 1.00 99.34 ATOM 85 NH1 ARG C 525 75.115 -35.485 210.217 1.00101.41 ATOM 86 NH2 ARG C 525 74.810 -35.177 207.959 1.00 98.92 ATOM 87 N ASP C 526 81.625 -39.855 212.205 1.00 88.01 ATOM 88 CA ASP C 526 82.225 -40.362 213.437 1.00 85.18 ATOM 89 C ASP C 526 83.184 -39.354 214.063 1.00 78.27 ATOM 90 O ASP C 526 84.104 -39.729 214.784 1.00 75.61 ATOM 91 CB ASP C 526 82.957 -41.687 213.179 1.00 89.82 ATOM 92 CG ASP C 526 83.948 -41.605 212.025 1.00 91.72 ATOM 93 OD1 ASP C 526 84.474 -40.507 211.742 1.00 89.49 ATOM 94 OD2 ASP C 526 84.195 -42.654 211.394 1.00 96.33 ATOM 95 N GLY C 527 82.971 -38.077 213.767 1.00 77.25 ATOM 96 CA GLY C 527 83.777 -37.007 214.329 1.00 75.51 ATOM 97 C GLY C 527 85.215 -36.969 213.856 1.00 74.13 ATOM 98 O GLY C 527 86.080 -36.395 214.511 1.00 74.31 ATOM 99 N GLN C 528 85.463 -37.540 212.686 1.00 76.58 ATOM 100 CA GLN C 528 86.805 -37.569 212.125 1.00 80.19 ATOM 101 C GLN C 528 86.816 -36.892 210.770 1.00 79.71 ATOM 102 O GLN C 528 85.865 -37.020 209.996 1.00 79.27 ATOM 103 CB GLN C 528 87.314 -39.005 212.008 1.00 83.39 ATOM 104 CG GLN C 528 87.541 -39.697 213.337 1.00 93.48 ATOM 105 CD GLN C 528 88.673 -39.069 214.134 1.00102.40 ATOM 106 OE1 GLN C 528 88.439 -38.372 215.123 1.00107.81 ATOM 107 NE2 GLN C 528 89.908 -39.318 213.709 1.00103.45 ATOM 108 N ALA C 529 87.887 -36.159 210.485 1.00 77.65 ATOM 109 CA ALA C 529 87.982 -35.474 209.209 1.00 69.74 ATOM 110 C ALA C 529 88.369 -36.470 208.121 1.00 70.07 ATOM 111 O ALA C 529 89.209 -37.348 208.331 1.00 72.34 ATOM 112 CB ALA C 529 88.991 -34.341 209.287 1.00 65.61 ATOM 113 N TYR C 530 87.759 -36.309 206.953 1.00 65.89 ATOM 114 CA TYR C 530 87.984 -37.198 205.826 1.00 61.62 ATOM 115 C TYR C 530 88.350 -36.415 204.582 1.00 62.65 ATOM 116 O TYR C 530 87.817 -35.334 204.341 1.00 62.47 ATOM 117 CB TYR C 530 86.740 -38.043 205.544 1.00 60.50 ATOM 118 CG TYR C 530 86.558 -39.246 206.442 1.00 63.90 ATOM 119 CD1 TYR C 530 85.757 -39.184 207.573 1.00 62.92 ATOM 120 CD2 TYR C 530 87.196 -40.443 206.161 1.00 67.07 ATOM 121 CE1 TYR C 530 85.596 -40.288 208.396 1.00 61.73 ATOM 122 CE2 TYR C 530 87.036 -41.548 206.972 1.00 67.17 ATOM 123 CZ TYR C 530 86.237 -41.464 208.086 1.00 63.32 ATOM 124 OH TYR C 530 86.089 -42.569 208.885 1.00 66.50 ATOM 125 N VAL C 531 89.261 -36.970 203.795 1.00 66.14 ATOM 126 CA VAL C 531 89.578 -36.423 202.486 1.00 66.52 ATOM 127 C VAL C 531 89.257 -37.478 201.447 1.00 72.60 ATOM 128 O VAL C 531 89.040 -38.642 201.785 1.00 75.43 ATOM 129 CB VAL C 531 91.048 -36.011 202.358 1.00 65.58 ATOM 130 CG1 VAL C 531 91.404 -35.018 203.443 1.00 67.78 ATOM 131 CG2 VAL C 531 91.944 -37.234 202.441 1.00 66.37 ATOM 132 N ARG C 532 89.214 -37.069 200.185 1.00 75.82 ATOM 133 CA ARG C 532 88.832 -37.977 199.112 1.00 76.15 ATOM 134 C ARG C 532 90.044 -38.463 198.334 1.00 74.46 ATOM 135 O ARG C 532 90.867 -37.665 197.876 1.00 74.71 ATOM 136 CB ARG C 532 87.837 -37.321 198.162 1.00 78.49 ATOM 137 CG ARG C 532 87.184 -38.322 197.233 1.00 84.20 ATOM 138 CD ARG C 532 85.724 -37.996 197.015 1.00 87.89 ATOM 139 NE ARG C 532 84.973 -39.140 196.504 1.00 89.76 ATOM 140 CZ ARG C 532 84.469 -40.102 197.271 1.00 88.69 ATOM 141 NH1 ARG C 532 83.793 -41.101 196.727 1.00 87.66 ATOM 142 NH2 ARG C 532 84.644 -40.066 198.585 1.00 88.62 ATOM 143 N LYS C 533 90.148 -39.781 198.206 1.00 74.53 ATOM 144 CA LYS C 533 91.233 -40.406 197.465 1.00 78.18 ATOM 145 C LYS C 533 90.772 -41.702 196.810 1.00 83.43 ATOM 146 O LYS C 533 90.196 -42.569 197.471 1.00 84.82 ATOM 147 CB LYS C 533 92.424 -40.689 198.379 1.00 76.45 ATOM 148 CG LYS C 533 93.408 -41.676 197.788 1.00 79.54 ATOM 149 CD LYS C 533 94.645 -41.820 198.645 1.00 85.13 ATOM 150 CE LYS C 533 95.432 -43.046 198.227 1.00 92.14 ATOM 151 NZ LYS C 533 94.775 -44.292 198.712 1.00 94.25 ATOM 152 N ASP C 534 91.027 -41.814 195.509 1.00 85.63 ATOM 153 CA ASP C 534 90.720 -43.015 194.738 1.00 87.50 ATOM 154 C ASP C 534 89.237 -43.369 194.768 1.00 85.98 ATOM 155 O ASP C 534 88.870 -44.542 194.764 1.00 87.42 ATOM 156 CB ASP C 534 91.544 -44.199 195.242 1.00 92.22 ATOM 157 CG ASP C 534 92.931 -44.229 194.649 1.00 97.99 ATOM 158 OD1 ASP C 534 93.120 -43.643 193.562 1.00 98.25 ATOM 159 OD2 ASP C 534 93.829 -44.839 195.266 1.00103.42 ATOM 160 N GLY C 535 88.392 -42.347 194.820 1.00 84.96 ATOM 161 CA GLY C 535 86.956 -42.532 194.716 1.00 84.93 ATOM 162 C GLY C 535 86.221 -42.874 195.997 1.00 84.27 ATOM 163 O GLY C 535 85.034 -43.192 195.965 1.00 83.58 ATOM 164 N GLU C 536 86.915 -42.825 197.127 1.00 85.08 ATOM 165 CA GLU C 536 86.257 -43.018 198.416 1.00 85.64 ATOM 166 C GLU C 536 86.822 -42.067 199.468 1.00 80.60 ATOM 167 O GLU C 536 87.814 -41.380 199.222 1.00 80.11 ATOM 168 CB GLU C 536 86.353 -44.476 198.865 1.00 94.53 ATOM 169 CG GLU C 536 87.714 -45.117 198.728 1.00103.92 ATOM 170 CD GLU C 536 87.616 -46.633 198.732 1.00112.17 ATOM 171 OE1 GLU C 536 86.682 -47.167 198.092 1.00111.30 ATOM 172 OE2 GLU C 536 88.458 -47.288 199.385 1.00117.63 ATOM 173 N TRP C 537 86.181 -42.022 200.632 1.00 76.55 ATOM 174 CA TRP C 537 86.628 -41.158 201.724 1.00 73.50 ATOM 175 C TRP C 537 87.685 -41.828 202.600 1.00 71.05 ATOM 176 O TRP C 537 87.513 -42.961 203.040 1.00 72.39 ATOM 177 CB TRP C 537 85.438 -40.743 202.596 1.00 71.90 ATOM 178 CG TRP C 537 84.442 -39.855 201.906 1.00 69.78 ATOM 179 CD1 TRP C 537 83.217 -40.219 201.430 1.00 68.66 ATOM 180 CD2 TRP C 537 84.575 -38.452 201.636 1.00 67.27 ATOM 181 NE1 TRP C 537 82.583 -39.137 200.873 1.00 66.02 ATOM 182 CE2 TRP C 537 83.395 -38.039 200.986 1.00 63.94 ATOM 183 CE3 TRP C 537 85.576 -37.507 201.876 1.00 65.76 ATOM 184 CZ2 TRP C 537 83.190 -36.725 200.573 1.00 59.72 ATOM 185 CZ3 TRP C 537 85.369 -36.202 201.467 1.00 62.47 ATOM 186 CH2 TRP C 537 84.186 -35.824 200.823 1.00 59.37 ATOM 187 N VAL C 538 88.783 -41.119 202.843 1.00 66.23 ATOM 188 CA VAL C 538 89.877 -41.628 203.665 1.00 59.83 ATOM 189 C VAL C 538 90.138 -40.690 204.838 1.00 57.26 ATOM 190 O VAL C 538 89.991 -39.476 204.707 1.00 51.67 ATOM 191 CB VAL C 538 91.166 -41.793 202.850 1.00 57.23 ATOM 192 CG1 VAL C 538 92.255 -42.433 203.692 1.00 57.56 ATOM 193 CG2 VAL C 538 90.900 -42.619 201.610 1.00 54.65 ATOM 194 N LEU C 539 90.494 -41.254 205.990 1.00 62.36 ATOM 195 CA LEU C 539 90.801 -40.446 207.165 1.00 65.11 ATOM 196 C LEU C 539 91.939 -39.479 206.898 1.00 68.02 ATOM 197 O LEU C 539 92.975 -39.858 206.351 1.00 69.39 ATOM 198 CB LEU C 539 91.172 -41.329 208.359 1.00 69.75 ATOM 199 CG LEU C 539 90.059 -42.001 209.152 1.00 72.30 ATOM 200 CD1 LEU C 539 90.651 -42.810 210.288 1.00 77.34 ATOM 201 CD2 LEU C 539 89.137 -40.937 209.699 1.00 70.81 ATOM 202 N LEU C 540 91.740 -38.225 207.286 1.00 67.21 ATOM 203 CA LEU C 540 92.789 -37.229 207.169 1.00 63.25 ATOM 204 C LEU C 540 93.957 -37.710 208.008 1.00 67.54 ATOM 205 O LEU C 540 95.117 -37.513 207.652 1.00 69.50 ATOM 206 CB LEU C 540 92.312 -35.856 207.622 1.00 56.87 ATOM 207 CG LEU C 540 93.395 -34.790 207.508 1.00 53.71 ATOM 208 CD1 LEU C 540 93.882 -34.710 206.067 1.00 51.35 ATOM 209 CD2 LEU C 540 92.867 -33.453 207.976 1.00 51.10 ATOM 210 N SER C 541 93.620 -38.365 209.117 1.00 70.47 ATOM 211 CA SER C 541 94.591 -38.914 210.059 1.00 72.29 ATOM 212 C SER C 541 95.643 -39.770 209.363 1.00 69.57 ATOM 213 O SER C 541 96.800 -39.796 209.778 1.00 70.94 ATOM 214 CB SER C 541 93.873 -39.757 211.119 1.00 77.52 ATOM 215 OG SER C 541 92.729 -39.091 211.631 1.00 76.44 ATOM 216 N THR C 542 95.224 -40.469 208.313 1.00 68.82 ATOM 217 CA THR C 542 96.108 -41.316 207.516 1.00 75.76 ATOM 218 C THR C 542 97.346 -40.586 206.988 1.00 80.83 ATOM 219 O THR C 542 98.417 -41.179 206.865 1.00 85.52 ATOM 220 CB THR C 542 95.360 -41.917 206.309 1.00 77.45 ATOM 221 OG1 THR C 542 94.216 -42.647 206.764 1.00 80.05 ATOM 222 CG2 THR C 542 96.265 -42.846 205.518 1.00 81.09 ATOM 223 N PHE C 543 97.202 -39.301 206.676 1.00 80.26 ATOM 224 CA PHE C 543 98.249 -38.606 205.933 1.00 81.63 ATOM 225 C PHE C 543 99.147 -37.690 206.761 1.00 88.56 ATOM 226 O PHE C 543 100.045 -37.052 206.222 1.00 88.51 ATOM 227 CB PHE C 543 97.596 -37.788 204.821 1.00 73.82 ATOM 228 CG PHE C 543 96.684 -38.593 203.948 1.00 71.95 ATOM 229 CD1 PHE C 543 97.187 -39.312 202.877 1.00 73.12 ATOM 230 CD2 PHE C 543 95.325 -38.655 204.213 1.00 69.92 ATOM 231 CE1 PHE C 543 96.354 -40.064 202.075 1.00 71.63 ATOM 232 CE2 PHE C 543 94.487 -39.409 203.416 1.00 70.63 ATOM 233 CZ PHE C 543 95.002 -40.115 202.345 1.00 71.00 ATOM 234 N LEU C 544 98.912 -37.619 208.064 1.00 99.01 ATOM 235 CA LEU C 544 99.737 -36.777 208.923 1.00112.53 ATOM 236 C LEU C 544 100.565 -37.610 209.901 1.00138.27 ATOM 237 O LEU C 544 100.447 -37.455 211.115 1.00136.29 ATOM 238 CB LEU C 544 98.885 -35.739 209.666 1.00102.75 ATOM 239 CG LEU C 544 98.165 -34.612 208.896 1.00 92.33 ATOM 240 CD1 LEU C 544 97.189 -35.075 207.835 1.00 57.21 ATOM 241 CD2 LEU C 544 97.457 -33.686 209.872 1.00 87.41 ATOM 242 N GLY C 545 101.401 -38.493 209.366 1.00 89.76 ATOM 243 CA GLY C 545 102.302 -39.281 210.189 1.00 95.04 ATOM 244 C GLY C 545 103.136 -40.250 209.372 1.00 99.19 ATOM 245 O GLY C 545 102.668 -41.326 208.995 1.00101.95 TER