HEADER OXIDOREDUCTASE 28-APR-17 5VMT TITLE Crystal structure of a glyceraldehyde-3-phosphate dehydrogenase from TITLE 2 Neisseria gonorrhoeae bound to NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: Glyceraldehyde-3-phosphate dehydrogenase; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 EC: 1.2.1.-; COMPND 5 FRAGMENT: residues ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.50 ANGSTORMS DBREF 5VMT A 1 334 UNP B4RPP8 B4RPP8_NEIG 24 357 SEQRES 1 A 150 MET SER ILE LYS VAL ALA ILE ASN GLY PHE GLY ARG ILE SEQRES 2 A 150 GLY ARG LEU ALA LEU ARG GLN ILE GLU LYS ALA HIS GLY SEQRES 3 A 150 ILE GLU VAL ALA ALA VAL ASN ASP LEU THR PRO ALA GLU SEQRES 4 A 150 MET LEU LEU HIS LEU PHE LYS TYR ASP SER THR GLN GLY SEQRES 5 A 150 ARG PHE GLN GLY THR ALA GLU LEU LYS ASP ASP ALA ILE SEQRES 6 A 150 VAL VAL ASN GLY ARG GLU ILE LYS VAL PHE ALA ASN PRO SEQRES 7 A 150 ASN PRO GLU GLU LEU PRO TRP GLY GLU LEU GLY VAL ASP SEQRES 8 A 150 VAL VAL LEU GLU CYS THR GLY PHE PHE THR ASN LYS THR SEQRES 9 A 150 LYS ALA GLU ALA HIS ILE ARG ALA GLY ALA ARG LYS VAL SEQRES 10 A 150 VAL ILE SER ALA PRO GLY GLY ASN ASP VAL LYS THR VAL SEQRES 11 A 150 VAL TYR GLY VAL ASN GLN ASP ILE LEU ASP GLY SER GLU SEQRES 12 A 150 THR VAL ILE SER ALA ALA SER SEQRES 1 A 19 ASN GLU MET SER TYR THR CYS GLN LEU VAL ARG THR LEU SEQRES 2 A 19 GLU TYR PHE ALA GLY LYS ATOM 1 N ASN A 323 47.660 13.016 17.752 1.00 27.33 ATOM 2 CA ASN A 323 47.135 14.316 18.134 1.00 24.83 ATOM 3 C ASN A 323 47.444 14.638 19.585 1.00 35.15 ATOM 4 O ASN A 323 47.470 15.816 19.962 1.00 33.73 ATOM 5 CB ASN A 323 45.627 14.363 17.892 1.00 30.16 ATOM 6 CG ASN A 323 44.924 13.107 18.381 1.00 33.84 ATOM 7 OD1 ASN A 323 45.025 12.044 17.753 1.00 26.30 ATOM 8 ND2 ASN A 323 44.224 13.215 19.511 1.00 22.82 ATOM 9 N GLU A 324 47.745 13.625 20.391 1.00 28.24 ATOM 10 CA GLU A 324 48.190 13.855 21.772 1.00 28.59 ATOM 11 C GLU A 324 49.712 13.991 21.877 1.00 30.07 ATOM 12 O GLU A 324 50.233 15.087 22.102 1.00 31.80 ATOM 13 CB GLU A 324 47.622 12.745 22.658 1.00 26.28 ATOM 14 CG GLU A 324 46.110 12.858 22.915 1.00 23.88 ATOM 15 CD GLU A 324 45.610 11.679 23.741 1.00 35.86 ATOM 16 OE1 GLU A 324 46.370 10.700 23.832 1.00 28.78 ATOM 17 OE2 GLU A 324 44.492 11.721 24.303 1.00 34.27 ATOM 18 N MET A 325 50.447 12.889 21.707 1.00 28.13 ATOM 19 CA MET A 325 51.874 12.940 22.015 1.00 30.48 ATOM 20 C MET A 325 52.649 13.764 20.987 1.00 32.79 ATOM 21 O MET A 325 53.615 14.449 21.348 1.00 38.02 ATOM 22 CB MET A 325 52.467 11.537 22.117 1.00 24.17 ATOM 23 CG MET A 325 53.925 11.540 22.584 1.00 24.77 ATOM 24 SD MET A 325 54.234 12.265 24.211 1.00 36.78 ATOM 25 CE MET A 325 53.816 10.889 25.304 1.00 28.10 ATOM 26 N SER A 326 52.283 13.674 19.701 1.00 31.80 ATOM 27 CA SER A 326 52.949 14.486 18.685 1.00 33.31 ATOM 28 C SER A 326 52.802 15.960 19.001 1.00 34.56 ATOM 29 O SER A 326 53.769 16.732 18.944 1.00 39.54 ATOM 30 CB SER A 326 52.374 14.206 17.298 1.00 34.89 ATOM 31 OG SER A 326 52.725 12.920 16.836 1.00 32.83 ATOM 32 N TYR A 327 51.595 16.366 19.360 1.00 29.40 ATOM 33 CA TYR A 327 51.391 17.763 19.676 1.00 25.24 ATOM 34 C TYR A 327 52.138 18.148 20.945 1.00 25.91 ATOM 35 O TYR A 327 52.777 19.209 21.000 1.00 30.55 ATOM 36 CB TYR A 327 49.898 18.048 19.811 1.00 25.16 ATOM 37 CG TYR A 327 49.659 19.496 20.116 1.00 32.52 ATOM 38 CD1 TYR A 327 49.757 20.451 19.118 1.00 30.42 ATOM 39 CD2 TYR A 327 49.379 19.918 21.398 1.00 36.27 ATOM 40 CE1 TYR A 327 49.554 21.780 19.382 1.00 31.67 ATOM 41 CE2 TYR A 327 49.183 21.262 21.676 1.00 43.82 ATOM 42 CZ TYR A 327 49.263 22.180 20.657 1.00 34.65 ATOM 43 OH TYR A 327 49.068 23.509 20.918 1.00 43.57 ATOM 44 N THR A 328 52.083 17.288 21.967 1.00 32.43 ATOM 45 CA THR A 328 52.766 17.558 23.229 1.00 31.34 ATOM 46 C THR A 328 54.247 17.830 22.998 1.00 32.82 ATOM 47 O THR A 328 54.823 18.746 23.600 1.00 40.03 ATOM 48 CB THR A 328 52.573 16.376 24.198 1.00 28.88 ATOM 49 OG1 THR A 328 51.191 16.254 24.563 1.00 30.77 ATOM 50 CG2 THR A 328 53.390 16.561 25.469 1.00 27.19 ATOM 51 N CYS A 329 54.886 17.033 22.144 1.00 32.90 ATOM 52 CA CYS A 329 56.308 17.220 21.879 1.00 30.66 ATOM 53 C CYS A 329 56.583 18.521 21.138 1.00 30.41 ATOM 54 O CYS A 329 57.610 19.169 21.374 1.00 38.83 ATOM 55 CB CYS A 329 56.861 16.020 21.115 1.00 34.49 ATOM 56 SG CYS A 329 56.897 14.490 22.103 1.00 37.21 ATOM 57 N GLN A 330 55.708 18.907 20.211 1.00 33.84 ATOM 58 CA GLN A 330 55.855 20.219 19.593 1.00 30.24 ATOM 59 C GLN A 330 55.687 21.315 20.631 1.00 34.35 ATOM 60 O GLN A 330 56.451 22.288 20.656 1.00 35.31 ATOM 61 CB GLN A 330 54.851 20.378 18.462 1.00 28.37 ATOM 62 CG GLN A 330 55.169 19.569 17.216 1.00 26.77 ATOM 63 CD GLN A 330 56.385 20.099 16.482 1.00 35.84 ATOM 64 OE1 GLN A 330 57.479 19.553 16.598 1.00 40.05 ATOM 65 NE2 GLN A 330 56.210 21.211 15.766 1.00 34.24 ATOM 66 N LEU A 331 54.699 21.149 21.513 1.00 35.83 ATOM 67 CA LEU A 331 54.453 22.097 22.590 1.00 29.07 ATOM 68 C LEU A 331 55.670 22.263 23.487 1.00 29.82 ATOM 69 O LEU A 331 56.003 23.381 23.889 1.00 35.81 ATOM 70 CB LEU A 331 53.253 21.623 23.395 1.00 34.47 ATOM 71 CG LEU A 331 52.865 22.483 24.586 1.00 41.55 ATOM 72 CD1 LEU A 331 52.431 23.877 24.157 1.00 44.87 ATOM 73 CD2 LEU A 331 51.761 21.767 25.313 1.00 38.28 ATOM 74 N VAL A 332 56.367 21.165 23.790 1.00 32.92 ATOM 75 CA VAL A 332 57.520 21.240 24.681 1.00 35.72 ATOM 76 C VAL A 332 58.712 21.881 23.973 1.00 40.14 ATOM 77 O VAL A 332 59.442 22.689 24.570 1.00 45.43 ATOM 78 CB VAL A 332 57.874 19.838 25.212 1.00 36.49 ATOM 79 CG1 VAL A 332 59.177 19.876 26.020 1.00 30.92 ATOM 80 CG2 VAL A 332 56.721 19.266 26.026 1.00 32.30 ATOM 81 N ARG A 333 58.931 21.530 22.698 1.00 34.40 ATOM 82 CA ARG A 333 60.003 22.143 21.912 1.00 33.49 ATOM 83 C ARG A 333 59.832 23.650 21.837 1.00 35.06 ATOM 84 O ARG A 333 60.795 24.409 22.000 1.00 41.52 ATOM 85 CB ARG A 333 60.025 21.561 20.496 1.00 30.47 ATOM 86 CG ARG A 333 60.468 20.121 20.388 1.00 29.92 ATOM 87 CD ARG A 333 60.298 19.602 18.966 1.00 30.17 ATOM 88 NE ARG A 333 60.553 18.179 18.935 1.00 32.42 ATOM 89 CZ ARG A 333 59.680 17.232 18.637 1.00 31.68 ATOM 90 NH1 ARG A 333 58.425 17.502 18.276 1.00 34.02 ATOM 91 NH2 ARG A 333 60.095 15.992 18.697 1.00 33.94 ATOM 92 N THR A 334 58.610 24.093 21.534 1.00 38.61 ATOM 93 CA THR A 334 58.318 25.515 21.464 1.00 33.57 ATOM 94 C THR A 334 58.541 26.163 22.814 1.00 33.27 ATOM 95 O THR A 334 59.143 27.234 22.903 1.00 38.26 ATOM 96 CB THR A 334 56.871 25.736 21.011 1.00 35.33 ATOM 97 OG1 THR A 334 56.690 25.222 19.685 1.00 36.00 ATOM 98 CG2 THR A 334 56.518 27.226 21.034 1.00 32.88 ATOM 99 N LEU A 335 58.094 25.494 23.880 1.00 34.84 ATOM 100 CA LEU A 335 58.308 25.992 25.233 1.00 36.34 ATOM 101 C LEU A 335 59.794 26.196 25.522 1.00 40.59 ATOM 102 O LEU A 335 60.200 27.245 26.045 1.00 40.72 ATOM 103 CB LEU A 335 57.695 25.007 26.220 1.00 39.29 ATOM 104 CG LEU A 335 58.031 25.154 27.699 1.00 48.51 ATOM 105 CD1 LEU A 335 57.498 26.432 28.250 1.00 48.48 ATOM 106 CD2 LEU A 335 57.422 23.983 28.437 1.00 57.77 ATOM 107 N GLU A 336 60.627 25.210 25.179 1.00 36.42 ATOM 108 CA GLU A 336 62.056 25.358 25.443 1.00 36.73 ATOM 109 C GLU A 336 62.652 26.490 24.620 1.00 37.12 ATOM 110 O GLU A 336 63.426 27.298 25.140 1.00 43.07 ATOM 111 CB GLU A 336 62.783 24.050 25.171 1.00 39.28 ATOM 112 CG GLU A 336 62.354 22.963 26.106 1.00 47.38 ATOM 113 CD GLU A 336 62.740 21.589 25.614 1.00 57.86 ATOM 114 OE1 GLU A 336 62.741 21.370 24.377 1.00 64.05 ATOM 115 OE2 GLU A 336 63.045 20.730 26.467 1.00 57.39 ATOM 116 N TYR A 337 62.307 26.566 23.333 1.00 37.45 ATOM 117 CA TYR A 337 62.837 27.644 22.502 1.00 39.55 ATOM 118 C TYR A 337 62.386 29.008 23.022 1.00 39.87 ATOM 119 O TYR A 337 63.197 29.924 23.193 1.00 42.95 ATOM 120 CB TYR A 337 62.389 27.431 21.047 1.00 39.03 ATOM 121 CG TYR A 337 62.890 28.486 20.091 1.00 40.68 ATOM 122 CD1 TYR A 337 62.155 29.646 19.866 1.00 42.86 ATOM 123 CD2 TYR A 337 64.098 28.334 19.416 1.00 37.25 ATOM 124 CE1 TYR A 337 62.606 30.619 18.998 1.00 48.93 ATOM 125 CE2 TYR A 337 64.557 29.305 18.547 1.00 38.28 ATOM 126 CZ TYR A 337 63.812 30.446 18.339 1.00 49.10 ATOM 127 OH TYR A 337 64.267 31.431 17.477 1.00 54.89 ATOM 128 N PHE A 338 61.099 29.128 23.344 1.00 36.90 ATOM 129 CA PHE A 338 60.536 30.377 23.836 1.00 39.49 ATOM 130 C PHE A 338 61.128 30.772 25.184 1.00 53.07 ATOM 131 O PHE A 338 61.320 31.965 25.452 1.00 62.08 ATOM 132 CB PHE A 338 59.015 30.234 23.923 1.00 37.04 ATOM 133 CG PHE A 338 58.286 31.510 24.233 1.00 42.41 ATOM 134 CD1 PHE A 338 58.693 32.715 23.682 1.00 44.73 ATOM 135 CD2 PHE A 338 57.170 31.490 25.058 1.00 37.82 ATOM 136 CE1 PHE A 338 58.007 33.887 23.963 1.00 48.53 ATOM 137 CE2 PHE A 338 56.472 32.639 25.339 1.00 42.85 ATOM 138 CZ PHE A 338 56.888 33.853 24.792 1.00 49.69 ATOM 139 N ALA A 339 61.402 29.790 26.057 1.00 50.87 ATOM 140 CA ALA A 339 61.962 30.104 27.373 1.00 48.28 ATOM 141 C ALA A 339 63.420 30.534 27.285 1.00 57.06 ATOM 142 O ALA A 339 63.884 31.309 28.129 1.00 66.00 ATOM 143 CB ALA A 339 61.814 28.917 28.324 1.00 40.55 ATOM 144 N GLY A 340 64.160 30.047 26.286 1.00 54.99 ATOM 145 CA GLY A 340 65.540 30.454 26.121 1.00 50.43 ATOM 146 C GLY A 340 65.631 31.860 25.546 1.00 56.48 ATOM 147 O GLY A 340 66.325 32.721 26.120 1.00 65.55 ATOM 148 N LYS A 341 64.927 32.113 24.446 1.00 75.50 ATOM 149 CA LYS A 341 64.973 33.397 23.734 1.00 71.12 ATOM 150 C LYS A 341 64.449 34.562 24.586 1.00 70.51 ATOM 151 O LYS A 341 63.912 34.383 25.681 1.00 75.37 ATOM 152 CB LYS A 341 64.188 33.323 22.418 1.00 45.64 ATOM 153 PA NAD A 41.066 17.748 28.517 1.00 41.64 ATOM 154 O1A NAD A 39.613 17.893 28.763 1.00 49.17 ATOM 155 O2A NAD A 41.508 16.296 28.471 1.00 40.23 ATOM 156 O5B NAD A 41.888 18.514 29.642 1.00 41.89 ATOM 157 C5B NAD A 41.522 19.844 30.048 1.00 36.71 ATOM 158 C4B NAD A 41.735 19.919 31.536 1.00 38.65 ATOM 159 O4B NAD A 41.552 21.277 31.983 1.00 42.33 ATOM 160 C3B NAD A 40.798 19.039 32.380 1.00 39.18 ATOM 161 O3B NAD A 41.551 18.135 33.182 1.00 37.44 ATOM 162 C2B NAD A 39.978 20.054 33.195 1.00 38.95 ATOM 163 O2B NAD A 39.646 19.601 34.500 1.00 40.56 ATOM 164 C1B NAD A 40.919 21.253 33.241 1.00 40.08 ATOM 165 N9A NAD A 40.255 22.536 33.419 1.00 43.18 ATOM 166 C8A NAD A 39.159 22.995 32.738 1.00 44.55 ATOM 167 N7A NAD A 38.824 24.228 33.033 1.00 45.27 ATOM 168 C5A NAD A 39.764 24.606 33.980 1.00 45.42 ATOM 169 C6A NAD A 39.975 25.811 34.678 1.00 46.49 ATOM 170 N6A NAD A 39.230 26.905 34.510 1.00 55.01 ATOM 171 N1A NAD A 41.009 25.863 35.548 1.00 40.93 ATOM 172 C2A NAD A 41.777 24.776 35.696 1.00 34.13 ATOM 173 N3A NAD A 41.680 23.591 35.087 1.00 33.07 ATOM 174 C4A NAD A 40.648 23.570 34.235 1.00 41.45 ATOM 175 O3 NAD A 41.526 18.371 27.123 1.00 41.22 ATOM 176 PN NAD A 42.850 18.162 26.246 1.00 43.25 ATOM 177 O1N NAD A 44.027 17.931 27.115 1.00 36.84 ATOM 178 O2N NAD A 42.544 17.205 25.160 1.00 41.48 ATOM 179 O5D NAD A 43.052 19.577 25.551 1.00 44.01 ATOM 180 C5D NAD A 43.536 20.733 26.264 1.00 43.38 ATOM 181 C4D NAD A 43.803 21.798 25.233 1.00 48.53 ATOM 182 O4D NAD A 44.765 21.291 24.282 1.00 49.29 ATOM 183 C3D NAD A 42.589 22.252 24.406 1.00 52.37 ATOM 184 O3D NAD A 42.654 23.645 24.106 1.00 51.22 ATOM 185 C2D NAD A 42.711 21.401 23.142 1.00 51.64 ATOM 186 O2D NAD A 42.114 21.995 21.995 1.00 49.23 ATOM 187 C1D NAD A 44.228 21.356 22.987 1.00 50.14 ATOM 188 N1N NAD A 44.783 20.162 22.157 1.00 48.08 ATOM 189 C2N NAD A 44.318 18.918 22.373 1.00 49.35 ATOM 190 C3N NAD A 44.751 17.871 21.581 1.00 47.46 ATOM 191 C7N NAD A 44.338 16.439 21.789 1.00 45.83 ATOM 192 O7N NAD A 44.538 15.619 20.892 1.00 45.80 ATOM 193 N7N NAD A 43.669 16.133 22.894 1.00 44.27 ATOM 194 C4N NAD A 45.680 18.134 20.584 1.00 54.94 ATOM 195 C5N NAD A 46.160 19.417 20.406 1.00 56.32 ATOM 196 C6N NAD A 45.698 20.423 21.203 1.00 55.39 TER