HEADER IMMUNE SYSTEM 31-DEC-69 5VN3 TITLE Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) TITLE 2 and fragment antigen binding variable domain of 17b COMPND MOL_ID: 3; COMPND 2 MOLECULE: Envelope glycoprotein gp160; COMPND 3 CHAIN: G, I, J; COMPND 4 MUTATION: YES; COMPND 5 ENGINEERED: YES; EXPDTA ELECTRON MICROSCOPY DBREF 5VN3 G 31 505 UNP B3UES2 B3UES2_9HIV 29 509 SEQRES 1 G 12 VAL LYS LEU THR PRO LEU CYS VAL THR LEU ASN CYS SEQRES 1 G 10 LEU ILE ASN CYS ASN THR SER VAL ILE THR ATOM 1 N VAL G 125 179.723 132.080 179.806 1.00 82.53 ATOM 2 CA VAL G 125 180.631 131.170 179.128 1.00 82.53 ATOM 3 C VAL G 125 180.004 130.879 177.778 1.00 82.53 ATOM 4 O VAL G 125 178.926 130.281 177.711 1.00 82.53 ATOM 5 CB VAL G 125 180.852 129.866 179.907 1.00 82.53 ATOM 6 CG1 VAL G 125 181.613 128.888 179.063 1.00 82.53 ATOM 7 CG2 VAL G 125 181.614 130.130 181.174 1.00 82.53 ATOM 8 N LYS G 126 180.650 131.309 176.709 1.00 80.29 ATOM 9 CA LYS G 126 180.126 131.091 175.370 1.00 80.29 ATOM 10 C LYS G 126 180.967 130.008 174.712 1.00 80.29 ATOM 11 O LYS G 126 181.955 130.289 174.036 1.00 80.29 ATOM 12 CB LYS G 126 180.135 132.360 174.565 1.00 80.29 ATOM 13 CG LYS G 126 179.411 132.211 173.261 1.00 80.29 ATOM 14 CD LYS G 126 179.341 133.508 172.512 1.00 80.29 ATOM 15 CE LYS G 126 178.620 133.307 171.202 1.00 80.29 ATOM 16 NZ LYS G 126 178.531 134.565 170.426 1.00 80.29 ATOM 17 N LEU G 127 180.567 128.763 174.914 1.00 84.91 ATOM 18 CA LEU G 127 181.278 127.635 174.339 1.00 84.91 ATOM 19 C LEU G 127 180.819 127.441 172.902 1.00 84.91 ATOM 20 O LEU G 127 179.662 127.094 172.657 1.00 84.91 ATOM 21 CB LEU G 127 181.026 126.386 175.174 1.00 84.91 ATOM 22 CG LEU G 127 181.836 125.134 174.879 1.00 84.91 ATOM 23 CD1 LEU G 127 182.110 124.459 176.185 1.00 84.91 ATOM 24 CD2 LEU G 127 181.082 124.174 173.983 1.00 84.91 ATOM 25 N THR G 128 181.726 127.653 171.952 1.00 94.20 ATOM 26 CA THR G 128 181.404 127.505 170.546 1.00 94.20 ATOM 27 C THR G 128 182.446 126.667 169.820 1.00 94.20 ATOM 28 O THR G 128 183.635 126.738 170.152 1.00 94.20 ATOM 29 CB THR G 128 181.266 128.877 169.880 1.00 94.20 ATOM 30 OG1 THR G 128 181.078 128.712 168.472 1.00 94.20 ATOM 31 CG2 THR G 128 182.466 129.757 170.155 1.00 94.20 ATOM 32 N PRO G 129 182.039 125.857 168.849 1.00 97.65 ATOM 33 CA PRO G 129 183.003 125.025 168.130 1.00 97.65 ATOM 34 C PRO G 129 183.831 125.823 167.141 1.00 97.65 ATOM 35 O PRO G 129 183.446 126.899 166.685 1.00 97.65 ATOM 36 CB PRO G 129 182.119 124.014 167.395 1.00 97.65 ATOM 37 CG PRO G 129 180.860 124.010 168.143 1.00 97.65 ATOM 38 CD PRO G 129 180.664 125.413 168.596 1.00 97.65 ATOM 39 N LEU G 130 184.991 125.258 166.813 1.00119.24 ATOM 40 CA LEU G 130 185.922 125.873 165.871 1.00119.24 ATOM 41 C LEU G 130 186.825 124.775 165.328 1.00119.24 ATOM 42 O LEU G 130 187.601 124.186 166.085 1.00119.24 ATOM 43 CB LEU G 130 186.740 126.964 166.538 1.00119.24 ATOM 44 CG LEU G 130 187.747 127.621 165.604 1.00119.24 ATOM 45 CD1 LEU G 130 187.026 128.279 164.450 1.00119.24 ATOM 46 CD2 LEU G 130 188.583 128.629 166.361 1.00119.24 ATOM 47 N CYS G 131 186.724 124.502 164.035 1.00132.50 ATOM 48 CA CYS G 131 187.527 123.464 163.411 1.00132.50 ATOM 49 C CYS G 131 188.701 124.054 162.643 1.00132.50 ATOM 50 O CYS G 131 188.748 125.247 162.338 1.00132.50 ATOM 51 CB CYS G 131 186.674 122.603 162.480 1.00132.50 ATOM 52 SG CYS G 131 185.517 121.535 163.342 1.00132.50 ATOM 53 N VAL G 132 189.658 123.181 162.337 1.00142.74 ATOM 54 CA VAL G 132 190.870 123.523 161.605 1.00142.74 ATOM 55 C VAL G 132 190.804 122.797 160.266 1.00142.74 ATOM 56 O VAL G 132 190.298 121.671 160.189 1.00142.74 ATOM 57 CB VAL G 132 192.131 123.137 162.413 1.00142.74 ATOM 58 CG1 VAL G 132 193.423 123.532 161.705 1.00142.74 ATOM 59 CG2 VAL G 132 192.088 123.768 163.793 1.00142.74 ATOM 60 N THR G 133 191.305 123.442 159.211 1.00149.02 ATOM 61 CA THR G 133 191.289 122.880 157.862 1.00149.02 ATOM 62 C THR G 133 192.285 121.728 157.750 1.00149.02 ATOM 63 O THR G 133 193.426 121.881 157.308 1.00149.02 ATOM 64 CB THR G 133 191.601 123.964 156.841 1.00149.02 ATOM 65 OG1 THR G 133 192.903 124.503 157.101 1.00149.02 ATOM 66 CG2 THR G 133 190.575 125.077 156.927 1.00149.02 ATOM 67 N LEU G 134 191.829 120.547 158.156 1.00150.93 ATOM 68 CA LEU G 134 192.608 119.319 158.089 1.00150.93 ATOM 69 C LEU G 134 191.701 118.229 157.545 1.00150.93 ATOM 70 O LEU G 134 190.662 117.926 158.138 1.00150.93 ATOM 71 CB LEU G 134 193.179 118.911 159.446 1.00150.93 ATOM 72 CG LEU G 134 194.267 119.816 160.023 1.00150.93 ATOM 73 CD1 LEU G 134 194.711 119.294 161.381 1.00150.93 ATOM 74 CD2 LEU G 134 195.448 119.953 159.070 1.00150.93 ATOM 75 N ASN G 135 192.098 117.657 156.415 1.00154.92 ATOM 76 CA ASN G 135 191.325 116.622 155.745 1.00154.92 ATOM 77 C ASN G 135 191.245 115.338 156.565 1.00154.92 ATOM 78 O ASN G 135 192.071 115.083 157.445 1.00154.92 ATOM 79 CB ASN G 135 191.938 116.348 154.375 1.00154.92 ATOM 80 CG ASN G 135 193.441 116.122 154.444 1.00154.92 ATOM 81 OD1 ASN G 135 194.041 116.149 155.519 1.00154.92 ATOM 82 ND2 ASN G 135 194.056 115.895 153.290 1.00154.92 ATOM 83 N CYS G 136 190.231 114.534 156.261 1.00153.67 ATOM 84 CA CYS G 136 189.989 113.257 156.915 1.00153.67 ATOM 85 C CYS G 136 189.130 112.381 156.022 1.00153.67 ATOM 86 O CYS G 136 187.939 112.640 155.860 1.00153.67 ATOM 87 CB CYS G 136 189.300 113.449 158.258 1.00153.67 ATOM 88 SG CYS G 136 188.941 111.918 159.129 1.00153.67 TER ATOM 1 N LEU G 209 191.317 112.510 161.658 1.00143.75 ATOM 2 CA LEU G 209 191.099 113.256 162.890 1.00143.75 ATOM 3 C LEU G 209 191.215 114.749 162.629 1.00143.75 ATOM 4 O LEU G 209 192.314 115.297 162.629 1.00143.75 ATOM 5 CB LEU G 209 192.103 112.820 163.962 1.00143.75 ATOM 6 CG LEU G 209 192.008 113.420 165.370 1.00143.75 ATOM 7 CD1 LEU G 209 190.695 113.052 166.041 1.00143.75 ATOM 8 CD2 LEU G 209 193.186 112.975 166.223 1.00143.75 ATOM 9 N ILE G 210 190.085 115.409 162.400 1.00142.56 ATOM 10 CA ILE G 210 190.090 116.844 162.141 1.00142.56 ATOM 11 C ILE G 210 190.233 117.570 163.469 1.00142.56 ATOM 12 O ILE G 210 189.579 117.217 164.457 1.00142.56 ATOM 13 CB ILE G 210 188.806 117.282 161.418 1.00142.56 ATOM 14 CG1 ILE G 210 188.568 116.439 160.178 1.00142.56 ATOM 15 CG2 ILE G 210 188.912 118.731 160.969 1.00142.56 ATOM 16 CD1 ILE G 210 187.197 116.624 159.578 1.00142.56 ATOM 17 N ASN G 211 191.089 118.582 163.501 1.00138.88 ATOM 18 CA ASN G 211 191.279 119.350 164.721 1.00138.88 ATOM 19 C ASN G 211 190.085 120.280 164.890 1.00138.88 ATOM 20 O ASN G 211 189.936 121.254 164.149 1.00138.88 ATOM 21 CB ASN G 211 192.585 120.132 164.660 1.00138.88 ATOM 22 CG ASN G 211 193.001 120.681 166.012 1.00138.88 ATOM 23 OD1 ASN G 211 192.331 120.460 167.021 1.00138.88 ATOM 24 ND2 ASN G 211 194.114 121.402 166.040 1.00138.88 ATOM 25 N CYS G 212 189.224 119.974 165.859 1.00131.55 ATOM 26 CA CYS G 212 188.037 120.775 166.158 1.00131.55 ATOM 27 C CYS G 212 188.011 121.008 167.664 1.00131.55 ATOM 28 O CYS G 212 187.357 120.271 168.406 1.00131.55 ATOM 29 CB CYS G 212 186.774 120.088 165.674 1.00131.55 ATOM 30 SG CYS G 212 186.655 119.943 163.888 1.00131.55 ATOM 31 N ASN G 213 188.720 122.035 168.113 1.00118.96 ATOM 32 CA ASN G 213 188.778 122.374 169.524 1.00118.96 ATOM 33 C ASN G 213 187.846 123.540 169.804 1.00118.96 ATOM 34 O ASN G 213 187.733 124.471 169.004 1.00118.96 ATOM 35 CB ASN G 213 190.203 122.730 169.954 1.00118.96 ATOM 36 CG ASN G 213 191.134 121.533 169.937 1.00118.96 ATOM 37 OD1 ASN G 213 190.731 120.416 170.255 1.00118.96 ATOM 38 ND2 ASN G 213 192.397 121.768 169.597 1.00118.96 ATOM 39 N THR G 214 187.176 123.478 170.948 1.00107.69 ATOM 40 CA THR G 214 186.251 124.527 171.331 1.00107.69 ATOM 41 C THR G 214 187.012 125.785 171.720 1.00107.69 ATOM 42 O THR G 214 188.189 125.743 172.078 1.00107.69 ATOM 43 CB THR G 214 185.388 124.072 172.498 1.00107.69 ATOM 44 OG1 THR G 214 186.217 123.883 173.647 1.00107.69 ATOM 45 CG2 THR G 214 184.724 122.758 172.167 1.00107.69 ATOM 46 N SER G 215 186.325 126.918 171.646 1.00 98.27 ATOM 47 CA SER G 215 186.914 128.208 171.991 1.00 98.27 ATOM 48 C SER G 215 185.906 128.921 172.879 1.00 98.27 ATOM 49 O SER G 215 184.880 129.401 172.395 1.00 98.27 ATOM 50 CB SER G 215 187.235 129.026 170.749 1.00 98.27 ATOM 51 OG SER G 215 186.047 129.412 170.089 1.00 98.27 ATOM 52 N VAL G 216 186.194 128.981 174.166 1.00 88.92 ATOM 53 CA VAL G 216 185.292 129.603 175.122 1.00 88.92 ATOM 54 C VAL G 216 185.646 131.066 175.310 1.00 88.92 ATOM 55 O VAL G 216 186.779 131.494 175.074 1.00 88.92 ATOM 56 CB VAL G 216 185.321 128.840 176.455 1.00 88.92 ATOM 57 CG1 VAL G 216 184.974 127.399 176.194 1.00 88.92 ATOM 58 CG2 VAL G 216 186.673 128.949 177.106 1.00 88.92 ATOM 59 N ILE G 217 184.651 131.842 175.718 1.00 86.22 ATOM 60 CA ILE G 217 184.783 133.269 175.966 1.00 86.22 ATOM 61 C ILE G 217 184.085 133.557 177.282 1.00 86.22 ATOM 62 O ILE G 217 182.948 133.124 177.486 1.00 86.22 ATOM 63 CB ILE G 217 184.172 134.111 174.830 1.00 86.22 ATOM 64 CG1 ILE G 217 184.973 133.960 173.544 1.00 86.22 ATOM 65 CG2 ILE G 217 184.099 135.575 175.200 1.00 86.22 ATOM 66 CD1 ILE G 217 184.313 134.600 172.350 1.00 86.22 ATOM 67 N THR G 218 184.759 134.273 178.175 1.00 86.50 ATOM 68 CA THR G 218 184.199 134.618 179.473 1.00 86.50 ATOM 69 C THR G 218 183.914 136.112 179.497 1.00 86.50 ATOM 70 O THR G 218 184.826 136.923 179.319 1.00 86.50 ATOM 71 CB THR G 218 185.152 134.229 180.594 1.00 86.50 ATOM 72 OG1 THR G 218 185.511 132.851 180.450 1.00 86.50 ATOM 73 CG2 THR G 218 184.463 134.399 181.913 1.00 86.50 TER