HEADER PHOTOSYNTHESIS 31-DEC-69 5WS5 TITLE Native XFEL structure of photosystem II (preflash dark dataset) COMPND MOL_ID: 18; COMPND 2 MOLECULE: Photosystem II reaction center protein Ycf12; COMPND 3 CHAIN: Y, y; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.35 ANGSTORMS DBREF 5WS5 y 17 46 UNP D0VWR3 YCF12_THEVL 1 30 SEQRES 1 y 29 VAL ILE ALA GLN LEU THR MET ILE ALA MET ILE GLY ILE SEQRES 2 y 29 ALA GLY PRO MET ILE ILE PHE LEU LEU ALA VAL ARG ARG SEQRES 3 y 29 GLY ASN LEU ATOM 1 N VAL y 2 4.955 53.281 19.430 1.00130.51 ATOM 2 CA VAL y 2 5.950 52.308 18.996 1.00134.51 ATOM 3 C VAL y 2 6.835 51.895 20.164 1.00134.79 ATOM 4 O VAL y 2 6.894 50.720 20.528 1.00136.46 ATOM 5 CB VAL y 2 6.831 52.856 17.868 1.00133.55 ATOM 6 CG1 VAL y 2 7.682 51.744 17.285 1.00123.88 ATOM 7 CG2 VAL y 2 5.971 53.492 16.791 1.00137.88 ATOM 8 N ILE y 3 7.529 52.870 20.743 1.00127.41 ATOM 9 CA ILE y 3 8.236 52.660 22.000 1.00133.34 ATOM 10 C ILE y 3 7.197 52.293 23.056 1.00134.74 ATOM 11 O ILE y 3 7.474 51.548 24.000 1.00133.42 ATOM 12 CB ILE y 3 9.032 53.911 22.441 1.00129.60 ATOM 13 CG1 ILE y 3 10.073 54.291 21.387 1.00127.55 ATOM 14 CG2 ILE y 3 9.706 53.685 23.791 1.00123.79 ATOM 15 CD1 ILE y 3 10.898 55.516 21.761 1.00122.28 ATOM 16 N ALA y 4 5.992 52.823 22.870 1.00125.77 ATOM 17 CA ALA y 4 4.877 52.569 23.769 1.00121.97 ATOM 18 C ALA y 4 4.519 51.085 23.791 1.00118.49 ATOM 19 O ALA y 4 4.357 50.499 24.861 1.00114.36 ATOM 20 CB ALA y 4 3.669 53.400 23.356 1.00117.63 ATOM 21 N GLN y 5 4.393 50.488 22.606 1.00119.15 ATOM 22 CA GLN y 5 4.087 49.060 22.474 1.00116.19 ATOM 23 C GLN y 5 5.141 48.164 23.130 1.00112.77 ATOM 24 O GLN y 5 4.804 47.196 23.818 1.00109.02 ATOM 25 CB GLN y 5 3.935 48.679 20.998 1.00109.77 ATOM 26 CG GLN y 5 2.603 49.065 20.390 1.00108.70 ATOM 27 CD GLN y 5 2.649 49.109 18.873 1.00117.03 ATOM 28 OE1 GLN y 5 3.717 49.251 18.275 1.00121.28 ATOM 29 NE2 GLN y 5 1.486 48.981 18.242 1.00118.06 ATOM 30 N LEU y 6 6.414 48.483 22.906 1.00117.17 ATOM 31 CA LEU y 6 7.501 47.698 23.479 1.00114.22 ATOM 32 C LEU y 6 7.557 47.865 24.987 1.00113.39 ATOM 33 O LEU y 6 7.878 46.922 25.702 1.00120.42 ATOM 34 CB LEU y 6 8.849 48.081 22.866 1.00109.56 ATOM 35 CG LEU y 6 9.005 47.887 21.363 1.00109.64 ATOM 36 CD1 LEU y 6 10.432 48.176 20.933 1.00107.14 ATOM 37 CD2 LEU y 6 8.620 46.474 21.015 1.00110.66 ATOM 38 N THR y 7 7.243 49.064 25.466 1.00100.60 ATOM 39 CA THR y 7 7.130 49.302 26.899 1.00105.50 ATOM 40 C THR y 7 6.009 48.463 27.511 1.00105.91 ATOM 41 O THR y 7 6.190 47.837 28.563 1.00105.86 ATOM 42 CB THR y 7 6.873 50.782 27.205 1.00103.58 ATOM 43 OG1 THR y 7 7.840 51.583 26.518 1.00104.13 ATOM 44 CG2 THR y 7 6.969 51.030 28.701 1.00 96.10 ATOM 45 N MET y 8 4.854 48.460 26.848 1.00105.84 ATOM 46 CA MET y 8 3.701 47.698 27.314 1.00106.61 ATOM 47 C MET y 8 4.043 46.214 27.391 1.00101.97 ATOM 48 O MET y 8 3.802 45.572 28.416 1.00101.18 ATOM 49 CB MET y 8 2.483 47.903 26.405 1.00105.46 ATOM 50 CG MET y 8 1.931 49.305 26.399 1.00106.20 ATOM 51 SD MET y 8 2.127 50.072 28.013 1.00121.33 ATOM 52 CE MET y 8 0.826 49.269 28.941 1.00106.89 ATOM 53 N ILE y 9 4.587 45.667 26.305 1.00 92.30 ATOM 54 CA ILE y 9 4.917 44.247 26.280 1.00103.67 ATOM 55 C ILE y 9 6.075 43.940 27.241 1.00101.40 ATOM 56 O ILE y 9 6.229 42.812 27.703 1.00101.83 ATOM 57 CB ILE y 9 5.257 43.764 24.845 1.00107.97 ATOM 58 CG1 ILE y 9 5.243 42.239 24.775 1.00109.89 ATOM 59 CG2 ILE y 9 6.575 44.336 24.366 1.00112.95 ATOM 60 CD1 ILE y 9 3.995 41.626 25.372 1.00108.79 ATOM 61 N ALA y 10 6.872 44.949 27.568 1.00100.41 ATOM 62 CA ALA y 10 7.895 44.777 28.593 1.00104.17 ATOM 63 C ALA y 10 7.276 44.614 29.994 1.00102.86 ATOM 64 O ALA y 10 7.610 43.675 30.712 1.00101.73 ATOM 65 CB ALA y 10 8.869 45.946 28.569 1.00106.91 ATOM 66 N MET y 11 6.382 45.523 30.381 1.00101.56 ATOM 67 CA MET y 11 5.732 45.430 31.691 1.00104.98 ATOM 68 C MET y 11 4.895 44.157 31.817 1.00108.22 ATOM 69 O MET y 11 5.065 43.358 32.762 1.00110.45 ATOM 70 CB MET y 11 4.847 46.652 31.942 1.00108.83 ATOM 71 CG MET y 11 5.572 47.979 31.819 1.00115.83 ATOM 72 SD MET y 11 4.443 49.387 31.836 1.00149.75 ATOM 73 CE MET y 11 3.705 49.225 33.463 1.00128.58 ATOM 74 N ILE y 12 3.985 43.993 30.857 1.00 94.86 ATOM 75 CA ILE y 12 3.139 42.811 30.755 1.00 86.95 ATOM 76 C ILE y 12 3.958 41.524 30.782 1.00 87.83 ATOM 77 O ILE y 12 3.689 40.623 31.579 1.00 91.75 ATOM 78 CB ILE y 12 2.296 42.857 29.467 1.00 89.29 ATOM 79 CG1 ILE y 12 1.256 43.969 29.564 1.00 93.52 ATOM 80 CG2 ILE y 12 1.625 41.512 29.190 1.00 90.71 ATOM 81 CD1 ILE y 12 0.446 44.136 28.312 1.00 98.62 ATOM 82 N GLY y 13 4.981 41.466 29.936 1.00 85.52 ATOM 83 CA GLY y 13 5.819 40.290 29.815 1.00 80.45 ATOM 84 C GLY y 13 6.626 39.975 31.062 1.00 92.76 ATOM 85 O GLY y 13 6.823 38.812 31.404 1.00 91.34 ATOM 86 N ILE y 14 7.106 41.009 31.742 1.00 97.36 ATOM 87 CA ILE y 14 7.936 40.791 32.915 1.00103.07 ATOM 88 C ILE y 14 7.073 40.425 34.118 1.00103.03 ATOM 89 O ILE y 14 7.567 39.838 35.071 1.00102.50 ATOM 90 CB ILE y 14 8.818 42.029 33.241 1.00102.07 ATOM 91 CG1 ILE y 14 10.202 41.574 33.715 1.00106.66 ATOM 92 CG2 ILE y 14 8.175 42.907 34.302 1.00 94.86 ATOM 93 CD1 ILE y 14 10.907 40.663 32.723 1.00110.18 ATOM 94 N ALA y 15 5.783 40.751 34.058 1.00 93.62 ATOM 95 CA ALA y 15 4.886 40.493 35.184 1.00 84.77 ATOM 96 C ALA y 15 4.827 39.017 35.616 1.00 90.38 ATOM 97 O ALA y 15 4.751 38.724 36.811 1.00 88.08 ATOM 98 CB ALA y 15 3.493 40.986 34.853 1.00 89.16 ATOM 99 N GLY y 16 4.837 38.090 34.659 1.00 85.91 ATOM 100 CA GLY y 16 4.748 36.674 34.988 1.00 86.43 ATOM 101 C GLY y 16 5.934 36.151 35.791 1.00 86.30 ATOM 102 O GLY y 16 5.778 35.643 36.930 1.00 87.74 ATOM 103 N PRO y 17 7.136 36.264 35.203 1.00 83.01 ATOM 104 CA PRO y 17 8.380 35.906 35.886 1.00 85.89 ATOM 105 C PRO y 17 8.527 36.633 37.224 1.00 89.48 ATOM 106 O PRO y 17 9.096 36.062 38.139 1.00 87.83 ATOM 107 CB PRO y 17 9.455 36.336 34.887 1.00 85.01 ATOM 108 CG PRO y 17 8.803 36.158 33.568 1.00 82.63 ATOM 109 CD PRO y 17 7.375 36.590 33.785 1.00 82.87 ATOM 110 N MET y 18 8.026 37.866 37.307 1.00 97.33 ATOM 111 CA MET y 18 8.031 38.667 38.526 1.00 93.44 ATOM 112 C MET y 18 7.238 37.967 39.622 1.00105.15 ATOM 113 O MET y 18 7.656 37.933 40.781 1.00106.23 ATOM 114 CB MET y 18 7.439 40.051 38.246 1.00 92.62 ATOM 115 CG MET y 18 7.396 41.028 39.428 1.00103.45 ATOM 116 SD MET y 18 9.008 41.529 40.074 1.00135.81 ATOM 117 CE MET y 18 9.798 42.116 38.576 1.00114.44 ATOM 118 N ILE y 19 6.085 37.417 39.249 1.00103.93 ATOM 119 CA ILE y 19 5.254 36.663 40.183 1.00102.92 ATOM 120 C ILE y 19 6.033 35.449 40.668 1.00100.70 ATOM 121 O ILE y 19 6.137 35.202 41.883 1.00102.95 ATOM 122 CB ILE y 19 3.918 36.213 39.540 1.00101.32 ATOM 123 CG1 ILE y 19 3.033 37.423 39.244 1.00101.68 ATOM 124 CG2 ILE y 19 3.173 35.230 40.439 1.00 93.11 ATOM 125 CD1 ILE y 19 1.853 37.105 38.359 1.00 98.68 ATOM 126 N ILE y 20 6.596 34.698 39.724 1.00 92.50 ATOM 127 CA ILE y 20 7.371 33.527 40.130 1.00 91.24 ATOM 128 C ILE y 20 8.520 33.887 41.072 1.00 98.80 ATOM 129 O ILE y 20 8.729 33.231 42.086 1.00 96.60 ATOM 130 CB ILE y 20 7.945 32.778 38.938 1.00 93.00 ATOM 131 CG1 ILE y 20 6.807 32.193 38.104 1.00 95.60 ATOM 132 CG2 ILE y 20 8.857 31.669 39.423 1.00 82.86 ATOM 133 CD1 ILE y 20 5.718 31.545 38.945 1.00 94.69 ATOM 134 N PHE y 21 9.239 34.948 40.737 1.00106.49 ATOM 135 CA PHE y 21 10.380 35.412 41.515 1.00102.40 ATOM 136 C PHE y 21 9.987 35.831 42.930 1.00105.26 ATOM 137 O PHE y 21 10.681 35.517 43.895 1.00104.95 ATOM 138 CB PHE y 21 11.059 36.574 40.785 1.00108.68 ATOM 139 CG PHE y 21 12.195 37.195 41.547 1.00112.76 ATOM 140 CD1 PHE y 21 13.459 36.626 41.516 1.00113.50 ATOM 141 CD2 PHE y 21 12.006 38.361 42.278 1.00111.83 ATOM 142 CE1 PHE y 21 14.506 37.196 42.214 1.00111.69 ATOM 143 CE2 PHE y 21 13.048 38.937 42.972 1.00109.65 ATOM 144 CZ PHE y 21 14.300 38.355 42.941 1.00111.25 ATOM 145 N LEU y 22 8.875 36.548 43.041 1.00 90.32 ATOM 146 CA LEU y 22 8.399 37.022 44.326 1.00 92.89 ATOM 147 C LEU y 22 7.967 35.861 45.206 1.00 93.67 ATOM 148 O LEU y 22 8.207 35.870 46.418 1.00 91.37 ATOM 149 CB LEU y 22 7.252 38.009 44.128 1.00 94.70 ATOM 150 CG LEU y 22 7.702 39.362 43.580 1.00 97.58 ATOM 151 CD1 LEU y 22 6.509 40.211 43.174 1.00 95.37 ATOM 152 CD2 LEU y 22 8.532 40.073 44.635 1.00 90.79 ATOM 153 N LEU y 23 7.346 34.853 44.600 1.00 92.68 ATOM 154 CA LEU y 23 6.986 33.650 45.351 1.00 96.03 ATOM 155 C LEU y 23 8.221 32.821 45.720 1.00 95.67 ATOM 156 O LEU y 23 8.257 32.179 46.766 1.00 97.78 ATOM 157 CB LEU y 23 6.000 32.794 44.564 1.00 91.98 ATOM 158 CG LEU y 23 4.586 33.360 44.626 1.00 93.44 ATOM 159 CD1 LEU y 23 3.651 32.547 43.744 1.00 90.94 ATOM 160 CD2 LEU y 23 4.096 33.433 46.068 1.00 90.01 ATOM 161 N ALA y 24 9.220 32.832 44.845 1.00 95.03 ATOM 162 CA ALA y 24 10.466 32.106 45.056 1.00 83.58 ATOM 163 C ALA y 24 11.225 32.673 46.243 1.00 94.55 ATOM 164 O ALA y 24 11.696 31.927 47.104 1.00103.10 ATOM 165 CB ALA y 24 11.325 32.160 43.812 1.00 83.49 ATOM 166 N VAL y 25 11.336 33.995 46.282 1.00109.22 ATOM 167 CA VAL y 25 12.027 34.670 47.364 1.00112.52 ATOM 168 C VAL y 25 11.363 34.404 48.711 1.00121.95 ATOM 169 O VAL y 25 12.034 34.027 49.672 1.00125.81 ATOM 170 CB VAL y 25 12.098 36.192 47.121 1.00109.52 ATOM 171 CG1 VAL y 25 12.437 36.923 48.401 1.00118.11 ATOM 172 CG2 VAL y 25 13.108 36.505 46.042 1.00106.76 ATOM 173 N ARG y 26 10.049 34.585 48.786 1.00110.23 ATOM 174 CA ARG y 26 9.372 34.432 50.065 1.00104.16 ATOM 175 C ARG y 26 8.830 33.017 50.245 1.00110.64 ATOM 176 O ARG y 26 7.838 32.817 50.948 1.00109.88 ATOM 177 CB ARG y 26 8.255 35.467 50.211 1.00 99.64 ATOM 178 CG ARG y 26 7.143 35.360 49.206 1.00108.35 ATOM 179 CD ARG y 26 6.393 36.680 49.092 1.00112.73 ATOM 180 NE ARG y 26 5.442 36.875 50.183 1.00119.53 ATOM 181 CZ ARG y 26 4.707 37.973 50.348 1.00126.41 ATOM 182 NH1 ARG y 26 3.862 38.062 51.366 1.00131.61 ATOM 183 NH2 ARG y 26 4.818 38.985 49.497 1.00130.21 ATOM 184 N ARG y 27 9.504 32.052 49.611 1.00118.55 ATOM 185 CA ARG y 27 9.211 30.618 49.731 1.00116.35 ATOM 186 C ARG y 27 7.719 30.285 49.767 1.00114.45 ATOM 187 O ARG y 27 7.258 29.535 50.632 1.00116.89 ATOM 188 CB ARG y 27 9.889 30.046 50.980 1.00118.78 ATOM 189 CG ARG y 27 11.408 29.986 50.904 1.00121.22 ATOM 190 CD ARG y 27 12.010 29.785 52.290 1.00135.21 ATOM 191 NE ARG y 27 13.473 29.785 52.281 1.00143.65 ATOM 192 CZ ARG y 27 14.231 29.846 53.376 1.00141.76 ATOM 193 NH1 ARG y 27 13.666 29.918 54.575 1.00135.80 ATOM 194 NH2 ARG y 27 15.555 29.837 53.274 1.00139.66 ATOM 195 N GLY y 28 6.969 30.852 48.827 1.00 90.51 ATOM 196 CA GLY y 28 5.543 30.594 48.720 1.00 88.36 ATOM 197 C GLY y 28 5.251 29.239 48.098 1.00 87.51 ATOM 198 O GLY y 28 6.168 28.475 47.790 1.00 84.73 ATOM 199 N ASN y 29 3.967 28.944 47.908 1.00 99.57 ATOM 200 CA ASN y 29 3.541 27.627 47.435 1.00 99.16 ATOM 201 C ASN y 29 3.690 27.406 45.926 1.00100.41 ATOM 202 O ASN y 29 2.707 27.141 45.230 1.00103.38 ATOM 203 CB ASN y 29 2.086 27.382 47.835 1.00 93.71 ATOM 204 CG ASN y 29 1.946 26.275 48.847 1.00108.85 ATOM 205 OD1 ASN y 29 1.851 25.101 48.486 1.00102.62 ATOM 206 ND2 ASN y 29 1.940 26.638 50.132 1.00119.79 ATOM 207 N LEU y 30 4.916 27.505 45.422 1.00 85.01 ATOM 208 CA LEU y 30 5.183 27.148 44.034 1.00 88.32 ATOM 209 C LEU y 30 5.073 25.635 43.840 1.00 89.23 ATOM 210 O LEU y 30 4.864 25.129 42.734 1.00101.07 ATOM 211 CB LEU y 30 6.564 27.635 43.610 1.00 86.70 ATOM 212 CG LEU y 30 6.722 29.125 43.338 1.00 91.03 ATOM 213 CD1 LEU y 30 8.179 29.442 43.066 1.00 95.26 ATOM 214 CD2 LEU y 30 5.860 29.533 42.157 1.00 93.58 ATOM 215 OXT LEU y 30 5.195 24.869 44.792 1.00 89.39 TER