HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF A 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 A 30 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 A 30 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 A 30 HIS SER GLY GLU ATOM 1 N GLY A 84 -45.985 -19.737 81.451 1.00 78.92 ATOM 2 CA GLY A 84 -45.461 -20.761 82.318 1.00 80.01 ATOM 3 C GLY A 84 -45.747 -22.174 81.860 1.00 80.31 ATOM 4 O GLY A 84 -45.510 -23.113 82.638 1.00 81.24 ATOM 5 N GLU A 85 -46.285 -22.356 80.643 1.00 72.89 ATOM 6 CA GLU A 85 -46.555 -23.694 80.122 1.00 67.94 ATOM 7 C GLU A 85 -45.258 -24.474 79.967 1.00 87.41 ATOM 8 O GLU A 85 -44.284 -23.980 79.393 1.00104.42 ATOM 9 CB GLU A 85 -47.264 -23.629 78.773 1.00 73.84 ATOM 10 CG GLU A 85 -48.596 -22.929 78.754 1.00 84.31 ATOM 11 CD GLU A 85 -48.849 -22.314 77.399 1.00100.99 ATOM 12 OE1 GLU A 85 -49.090 -23.095 76.453 1.00104.00 ATOM 13 OE2 GLU A 85 -48.774 -21.068 77.268 1.00 97.66 ATOM 14 N ARG A 86 -45.257 -25.707 80.462 1.00 90.37 ATOM 15 CA ARG A 86 -44.118 -26.617 80.341 1.00 90.12 ATOM 16 C ARG A 86 -44.626 -27.931 79.755 1.00 74.66 ATOM 17 O ARG A 86 -44.680 -28.958 80.443 1.00 89.23 ATOM 18 CB ARG A 86 -43.455 -26.819 81.705 1.00 86.00 ATOM 19 CG ARG A 86 -43.032 -25.509 82.351 1.00 95.73 ATOM 20 CD ARG A 86 -42.395 -25.729 83.707 1.00 90.91 ATOM 21 NE ARG A 86 -42.084 -24.476 84.401 1.00 88.10 ATOM 22 CZ ARG A 86 -40.853 -24.038 84.653 1.00 93.94 ATOM 23 NH1 ARG A 86 -39.808 -24.760 84.279 1.00 98.23 ATOM 24 NH2 ARG A 86 -40.670 -22.891 85.298 1.00 95.42 ATOM 25 N PRO A 87 -45.013 -27.935 78.466 1.00101.40 ATOM 26 CA PRO A 87 -45.707 -29.114 77.924 1.00 83.84 ATOM 27 C PRO A 87 -44.825 -30.304 77.543 1.00 98.96 ATOM 28 O PRO A 87 -45.136 -30.956 76.540 1.00102.34 ATOM 29 CB PRO A 87 -46.413 -28.548 76.682 1.00 86.51 ATOM 30 CG PRO A 87 -45.671 -27.346 76.304 1.00 79.17 ATOM 31 CD PRO A 87 -45.029 -26.794 77.527 1.00 82.55 ATOM 32 N PHE A 88 -43.771 -30.633 78.304 1.00116.49 ATOM 33 CA PHE A 88 -42.892 -31.757 77.948 1.00117.10 ATOM 34 C PHE A 88 -42.339 -32.390 79.226 1.00115.27 ATOM 35 O PHE A 88 -41.369 -31.874 79.795 1.00113.35 ATOM 36 CB PHE A 88 -41.742 -31.305 77.042 1.00115.50 ATOM 37 CG PHE A 88 -42.164 -30.893 75.647 1.00114.88 ATOM 38 CD1 PHE A 88 -42.303 -29.554 75.311 1.00112.79 ATOM 39 CD2 PHE A 88 -42.412 -31.848 74.672 1.00115.96 ATOM 40 CE1 PHE A 88 -42.685 -29.183 74.031 1.00114.24 ATOM 41 CE2 PHE A 88 -42.792 -31.477 73.392 1.00117.78 ATOM 42 CZ PHE A 88 -42.929 -30.148 73.075 1.00116.34 ATOM 43 N GLN A 89 -42.876 -33.547 79.610 1.00130.51 ATOM 44 CA GLN A 89 -42.550 -34.190 80.883 1.00130.05 ATOM 45 C GLN A 89 -41.475 -35.253 80.703 1.00125.46 ATOM 46 O GLN A 89 -41.461 -35.970 79.698 1.00127.61 ATOM 47 CB GLN A 89 -43.793 -34.852 81.495 1.00132.62 ATOM 48 CG GLN A 89 -44.310 -34.297 82.821 1.00131.59 ATOM 49 CD GLN A 89 -43.522 -34.849 84.004 1.00132.00 ATOM 50 OE1 GLN A 89 -42.699 -35.752 83.845 1.00127.55 ATOM 51 NE2 GLN A 89 -43.815 -34.350 85.202 1.00135.55 ATOM 52 N CYS A 90 -40.580 -35.365 81.683 1.00101.62 ATOM 53 CA CYS A 90 -39.643 -36.484 81.701 1.00100.32 ATOM 54 C CYS A 90 -40.377 -37.650 82.332 1.00107.18 ATOM 55 O CYS A 90 -40.579 -37.676 83.552 1.00109.61 ATOM 56 CB CYS A 90 -38.374 -36.179 82.489 1.00 94.10 ATOM 57 SG CYS A 90 -37.194 -37.587 82.587 1.00 91.22 ATOM 58 N SER A 91 -40.727 -38.644 81.509 1.00142.82 ATOM 59 CA SER A 91 -41.444 -39.820 81.993 1.00142.96 ATOM 60 C SER A 91 -40.805 -40.413 83.243 1.00137.32 ATOM 61 O SER A 91 -41.460 -41.158 83.983 1.00141.68 ATOM 62 CB SER A 91 -41.494 -40.856 80.869 1.00141.73 ATOM 63 OG SER A 91 -40.195 -41.081 80.330 1.00137.85 ATOM 64 N LEU A 92 -39.561 -40.044 83.517 1.00110.13 ATOM 65 CA LEU A 92 -38.771 -40.616 84.582 1.00109.76 ATOM 66 C LEU A 92 -38.610 -39.687 85.786 1.00111.64 ATOM 67 O LEU A 92 -38.130 -40.149 86.829 1.00117.25 ATOM 68 CB LEU A 92 -37.407 -40.995 84.009 1.00107.12 ATOM 69 CG LEU A 92 -37.223 -42.372 83.356 1.00106.73 ATOM 70 CD1 LEU A 92 -38.432 -42.757 82.513 1.00112.76 ATOM 71 CD2 LEU A 92 -35.953 -42.313 82.465 1.00101.36 ATOM 72 N CYS A 93 -39.041 -38.423 85.703 1.00106.66 ATOM 73 CA CYS A 93 -38.980 -37.524 86.866 1.00106.69 ATOM 74 C CYS A 93 -40.069 -36.457 86.717 1.00108.88 ATOM 75 O CYS A 93 -40.994 -36.592 85.908 1.00109.46 ATOM 76 CB CYS A 93 -37.581 -36.911 87.074 1.00105.76 ATOM 77 SG CYS A 93 -37.043 -35.462 86.075 1.00107.93 ATOM 78 N SER A 94 -39.996 -35.427 87.559 1.00 99.09 ATOM 79 CA SER A 94 -40.998 -34.374 87.623 1.00103.70 ATOM 80 C SER A 94 -40.786 -33.249 86.620 1.00103.87 ATOM 81 O SER A 94 -41.691 -32.428 86.454 1.00108.11 ATOM 82 CB SER A 94 -41.025 -33.788 89.032 1.00102.99 ATOM 83 OG SER A 94 -40.852 -34.815 89.989 1.00102.81 ATOM 84 N TYR A 95 -39.620 -33.180 85.974 1.00 99.30 ATOM 85 CA TYR A 95 -39.259 -32.029 85.151 1.00 99.63 ATOM 86 C TYR A 95 -40.199 -31.843 83.955 1.00101.14 ATOM 87 O TYR A 95 -40.723 -32.805 83.384 1.00100.93 ATOM 88 CB TYR A 95 -37.811 -32.154 84.672 1.00 94.90 ATOM 89 CG TYR A 95 -37.453 -31.071 83.695 1.00 94.10 ATOM 90 CD1 TYR A 95 -37.452 -29.741 84.091 1.00 95.71 ATOM 91 CD2 TYR A 95 -37.124 -31.365 82.376 1.00 94.87 ATOM 92 CE1 TYR A 95 -37.138 -28.721 83.202 1.00 98.30 ATOM 93 CE2 TYR A 95 -36.801 -30.345 81.468 1.00 96.03 ATOM 94 CZ TYR A 95 -36.809 -29.024 81.895 1.00 94.91 ATOM 95 OH TYR A 95 -36.492 -27.990 81.041 1.00 89.02 ATOM 96 N ALA A 96 -40.372 -30.580 83.554 1.00104.41 ATOM 97 CA ALA A 96 -41.215 -30.222 82.414 1.00106.19 ATOM 98 C ALA A 96 -40.667 -28.970 81.733 1.00108.16 ATOM 99 O ALA A 96 -40.503 -27.931 82.383 1.00106.08 ATOM 100 CB ALA A 96 -42.657 -30.000 82.871 1.00109.60 ATOM 101 N SER A 97 -40.412 -29.058 80.423 1.00111.17 ATOM 102 CA SER A 97 -39.696 -28.027 79.682 1.00112.63 ATOM 103 C SER A 97 -40.612 -27.237 78.754 1.00112.35 ATOM 104 O SER A 97 -41.686 -27.692 78.354 1.00116.15 ATOM 105 CB SER A 97 -38.567 -28.643 78.853 1.00114.67 ATOM 106 OG SER A 97 -39.027 -28.975 77.557 1.00117.67 ATOM 107 N ARG A 98 -40.141 -26.045 78.384 1.00112.54 ATOM 108 CA ARG A 98 -40.901 -25.190 77.479 1.00114.78 ATOM 109 C ARG A 98 -40.890 -25.726 76.051 1.00121.98 ATOM 110 O ARG A 98 -41.851 -25.503 75.304 1.00128.24 ATOM 111 CB ARG A 98 -40.352 -23.756 77.540 1.00112.99 ATOM 112 CG ARG A 98 -40.305 -23.178 78.966 1.00117.93 ATOM 113 CD ARG A 98 -41.536 -22.298 79.272 1.00124.99 ATOM 114 NE ARG A 98 -41.945 -22.255 80.685 1.00129.02 ATOM 115 CZ ARG A 98 -41.298 -21.629 81.671 1.00130.45 ATOM 116 NH1 ARG A 98 -40.159 -20.977 81.446 1.00129.84 ATOM 117 NH2 ARG A 98 -41.799 -21.664 82.904 1.00131.76 ATOM 118 N ASP A 99 -39.831 -26.438 75.654 1.00113.58 ATOM 119 CA ASP A 99 -39.707 -26.941 74.291 1.00114.23 ATOM 120 C ASP A 99 -39.048 -28.316 74.338 1.00109.11 ATOM 121 O ASP A 99 -38.619 -28.786 75.392 1.00109.37 ATOM 122 CB ASP A 99 -38.935 -25.945 73.408 1.00114.38 ATOM 123 CG ASP A 99 -37.423 -26.143 73.453 1.00110.50 ATOM 124 OD1 ASP A 99 -36.771 -25.982 72.386 1.00108.38 ATOM 125 OD2 ASP A 99 -36.888 -26.464 74.541 1.00105.82 ATOM 126 N THR A 100 -38.931 -28.947 73.171 1.00103.74 ATOM 127 CA THR A 100 -38.475 -30.334 73.089 1.00100.10 ATOM 128 C THR A 100 -37.001 -30.483 73.475 1.00 94.79 ATOM 129 O THR A 100 -36.611 -31.461 74.141 1.00 94.04 ATOM 130 CB THR A 100 -38.689 -30.837 71.662 1.00100.78 ATOM 131 OG1 THR A 100 -37.470 -31.404 71.165 1.00 98.74 ATOM 132 CG2 THR A 100 -39.085 -29.669 70.747 1.00102.90 ATOM 133 N TYR A 101 -36.164 -29.526 73.060 1.00 92.86 ATOM 134 CA TYR A 101 -34.724 -29.705 73.206 1.00 89.71 ATOM 135 C TYR A 101 -34.298 -29.703 74.660 1.00 87.68 ATOM 136 O TYR A 101 -33.397 -30.459 75.033 1.00 87.92 ATOM 137 CB TYR A 101 -33.951 -28.633 72.448 1.00 89.03 ATOM 138 CG TYR A 101 -32.466 -28.746 72.669 1.00 85.66 ATOM 139 CD1 TYR A 101 -31.756 -29.847 72.202 1.00 86.86 ATOM 140 CD2 TYR A 101 -31.762 -27.748 73.321 1.00 83.74 ATOM 141 CE1 TYR A 101 -30.382 -29.960 72.389 1.00 81.71 ATOM 142 CE2 TYR A 101 -30.376 -27.846 73.510 1.00 81.28 ATOM 143 CZ TYR A 101 -29.697 -28.957 73.050 1.00 81.19 ATOM 144 OH TYR A 101 -28.335 -29.058 73.263 1.00 82.95 ATOM 145 N LYS A 102 -34.887 -28.829 75.490 1.00 86.67 ATOM 146 CA LYS A 102 -34.470 -28.818 76.885 1.00 84.78 ATOM 147 C LYS A 102 -34.736 -30.166 77.533 1.00 84.60 ATOM 148 O LYS A 102 -33.949 -30.606 78.375 1.00 83.94 ATOM 149 CB LYS A 102 -35.143 -27.690 77.677 1.00 87.24 ATOM 150 CG LYS A 102 -34.220 -26.470 77.892 1.00 87.08 ATOM 151 CD LYS A 102 -34.957 -25.144 77.993 1.00 91.83 ATOM 152 CE LYS A 102 -35.994 -24.998 76.902 1.00 93.91 ATOM 153 NZ LYS A 102 -36.691 -23.663 76.832 1.00 93.14 ATOM 154 N LEU A 103 -35.763 -30.883 77.074 1.00 86.91 ATOM 155 CA LEU A 103 -36.010 -32.226 77.584 1.00 87.13 ATOM 156 C LEU A 103 -35.013 -33.241 77.026 1.00 85.50 ATOM 157 O LEU A 103 -34.565 -34.127 77.762 1.00 84.52 ATOM 158 CB LEU A 103 -37.438 -32.681 77.288 1.00 90.52 ATOM 159 CG LEU A 103 -37.653 -34.103 77.799 1.00 91.02 ATOM 160 CD1 LEU A 103 -37.412 -34.158 79.295 1.00 89.92 ATOM 161 CD2 LEU A 103 -39.029 -34.599 77.459 1.00 94.64 ATOM 162 N LYS A 104 -34.693 -33.188 75.722 1.00 85.60 ATOM 163 CA LYS A 104 -33.658 -34.110 75.233 1.00 84.14 ATOM 164 C LYS A 104 -32.341 -33.897 75.993 1.00 81.37 ATOM 165 O LYS A 104 -31.590 -34.855 76.246 1.00 80.39 ATOM 166 CB LYS A 104 -33.424 -33.923 73.734 1.00 84.73 ATOM 167 CG LYS A 104 -32.699 -35.067 73.001 1.00 84.31 ATOM 168 CD LYS A 104 -32.071 -34.565 71.700 1.00 84.26 ATOM 169 CE LYS A 104 -33.120 -34.264 70.586 1.00 87.13 ATOM 170 NZ LYS A 104 -32.575 -33.517 69.354 1.00 87.51 ATOM 171 N ARG A 105 -32.059 -32.643 76.369 1.00 80.43 ATOM 172 CA ARG A 105 -30.874 -32.289 77.147 1.00 78.18 ATOM 173 C ARG A 105 -30.992 -32.738 78.596 1.00 77.87 ATOM 174 O ARG A 105 -29.987 -33.017 79.262 1.00 76.42 ATOM 175 CB ARG A 105 -30.681 -30.780 77.084 1.00 77.82 ATOM 176 CG ARG A 105 -29.450 -30.287 77.770 1.00 75.83 ATOM 177 CD ARG A 105 -29.302 -28.775 77.668 1.00 75.86 ATOM 178 NE ARG A 105 -30.279 -28.042 78.453 1.00 76.96 ATOM 179 CZ ARG A 105 -30.336 -26.718 78.515 1.00 77.48 ATOM 180 NH1 ARG A 105 -29.470 -25.979 77.842 1.00 77.00 ATOM 181 NH2 ARG A 105 -31.259 -26.131 79.259 1.00 78.76 ATOM 182 N HIS A 106 -32.205 -32.753 79.116 1.00 79.54 ATOM 183 CA HIS A 106 -32.427 -33.284 80.439 1.00 79.77 ATOM 184 C HIS A 106 -32.231 -34.793 80.450 1.00 80.15 ATOM 185 O HIS A 106 -31.758 -35.364 81.442 1.00 79.76 ATOM 186 CB HIS A 106 -33.840 -32.899 80.872 1.00 81.95 ATOM 187 CG HIS A 106 -34.319 -33.624 82.075 1.00 82.99 ATOM 188 ND1 HIS A 106 -33.812 -33.383 83.333 1.00 82.05 ATOM 189 CD2 HIS A 106 -35.258 -34.584 82.219 1.00 85.20 ATOM 190 CE1 HIS A 106 -34.417 -34.171 84.201 1.00 85.82 ATOM 191 NE2 HIS A 106 -35.303 -34.906 83.552 1.00 86.84 ATOM 192 N MET A 107 -32.586 -35.447 79.347 1.00 81.52 ATOM 193 CA MET A 107 -32.513 -36.902 79.284 1.00 82.37 ATOM 194 C MET A 107 -31.105 -37.420 79.484 1.00 80.73 ATOM 195 O MET A 107 -30.925 -38.541 79.973 1.00 81.51 ATOM 196 CB MET A 107 -33.045 -37.396 77.943 1.00 84.32 ATOM 197 CG MET A 107 -34.506 -37.676 77.938 1.00 88.10 ATOM 198 SD MET A 107 -35.042 -38.396 79.515 1.00 92.14 ATOM 199 CE MET A 107 -36.778 -37.993 79.317 1.00 95.89 ATOM 200 N ARG A 108 -30.102 -36.632 79.076 1.00 80.49 ATOM 201 CA ARG A 108 -28.708 -37.030 79.238 1.00 79.23 ATOM 202 C ARG A 108 -28.392 -37.304 80.710 1.00 79.17 ATOM 203 O ARG A 108 -27.492 -38.100 81.024 1.00 80.81 ATOM 204 CB ARG A 108 -27.779 -35.950 78.696 1.00 77.56 ATOM 205 CG ARG A 108 -28.131 -35.411 77.298 1.00 77.87 ATOM 206 CD ARG A 108 -26.846 -35.089 76.548 1.00 76.75 ATOM 207 NE ARG A 108 -26.689 -33.719 76.078 1.00 76.19 ATOM 208 CZ ARG A 108 -27.322 -33.206 75.040 1.00 77.15 ATOM 209 NH1 ARG A 108 -28.182 -33.966 74.367 1.00 78.66 ATOM 210 NH2 ARG A 108 -27.092 -31.939 74.680 1.00 76.93 ATOM 211 N THR A 109 -29.085 -36.616 81.627 1.00 84.86 ATOM 212 CA THR A 109 -28.824 -36.837 83.043 1.00 85.10 ATOM 213 C THR A 109 -29.316 -38.202 83.500 1.00 87.13 ATOM 214 O THR A 109 -28.728 -38.788 84.414 1.00 89.72 ATOM 215 CB THR A 109 -29.472 -35.745 83.880 1.00 85.05 ATOM 216 OG1 THR A 109 -30.886 -35.959 83.947 1.00 86.91 ATOM 217 CG2 THR A 109 -29.208 -34.394 83.237 1.00 84.03 ATOM 218 N HIS A 110 -30.373 -38.734 82.881 1.00 81.21 ATOM 219 CA HIS A 110 -30.799 -40.093 83.195 1.00 83.46 ATOM 220 C HIS A 110 -29.955 -41.119 82.454 1.00 83.61 ATOM 221 O HIS A 110 -29.539 -42.124 83.037 1.00 84.90 ATOM 222 CB HIS A 110 -32.281 -40.267 82.885 1.00 85.49 ATOM 223 CG HIS A 110 -33.173 -39.460 83.771 1.00 86.12 ATOM 224 ND1 HIS A 110 -33.423 -39.796 85.086 1.00 87.50 ATOM 225 CD2 HIS A 110 -33.821 -38.294 83.554 1.00 85.77 ATOM 226 CE1 HIS A 110 -34.223 -38.892 85.626 1.00 90.41 ATOM 227 NE2 HIS A 110 -34.473 -37.965 84.718 1.00 93.16 ATOM 228 N SER A 111 -29.677 -40.874 81.169 1.00 91.66 ATOM 229 CA SER A 111 -28.878 -41.821 80.394 1.00 92.00 ATOM 230 C SER A 111 -27.426 -41.856 80.855 1.00 93.01 ATOM 231 O SER A 111 -26.760 -42.896 80.755 1.00 92.07 ATOM 232 CB SER A 111 -28.942 -41.458 78.921 1.00 91.37 ATOM 233 OG SER A 111 -28.350 -40.196 78.708 1.00 89.89 ATOM 234 N GLY A 112 -26.926 -40.756 81.398 1.00 97.12 ATOM 235 CA GLY A 112 -25.518 -40.669 81.693 1.00 95.67 ATOM 236 C GLY A 112 -24.660 -40.411 80.487 1.00106.43 ATOM 237 O GLY A 112 -23.444 -40.584 80.565 1.00103.31 ATOM 238 N GLU A 113 -25.259 -40.012 79.368 1.00 57.47 ATOM 239 CA GLU A 113 -24.491 -39.698 78.179 1.00 56.83 ATOM 240 C GLU A 113 -23.735 -38.406 78.434 1.00 66.10 ATOM 241 O GLU A 113 -24.228 -37.501 79.119 1.00 84.73 ATOM 242 CB GLU A 113 -25.396 -39.506 76.977 1.00 57.95 ATOM 243 CG GLU A 113 -24.652 -39.509 75.665 1.00 62.88 ATOM 244 CD GLU A 113 -25.521 -39.037 74.511 1.00 75.13 ATOM 245 OE1 GLU A 113 -26.665 -38.605 74.787 1.00 77.01 ATOM 246 OE2 GLU A 113 -25.073 -39.115 73.336 1.00 82.52 ATOM 247 ZN ZN A -36.176 -36.569 84.410 1.00 84.13 TER