HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEF TITLE Crystal structure of CTCF ZFs2-8-Hs5-1aE COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B, G, J; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.81 ANGSTORMS DBREF 5YEF G 292 490 UNP P49711 CTCF_HUMAN 292 490 SEQRES 1 B 28 HIS GLU LYS PRO PHE LYS CYS SER MET CYS ASP TYR ALA SEQRES 2 B 28 SER VAL GLU VAL SER LYS LEU LYS ARG HIS ILE ARG SER SEQRES 3 B 28 HIS THR ATOM 1 N GLY J 84 -53.599 7.888 80.804 1.00 89.38 ATOM 2 CA GLY J 84 -53.865 8.971 81.721 1.00 84.36 ATOM 3 C GLY J 84 -53.427 10.348 81.261 1.00 85.80 ATOM 4 O GLY J 84 -53.538 11.298 82.045 1.00 95.61 ATOM 5 N GLU J 85 -52.956 10.504 80.019 1.00 84.44 ATOM 6 CA GLU J 85 -52.591 11.838 79.552 1.00 81.63 ATOM 7 C GLU J 85 -53.811 12.729 79.502 1.00 91.40 ATOM 8 O GLU J 85 -54.829 12.383 78.898 1.00 99.47 ATOM 9 CB GLU J 85 -51.917 11.817 78.177 1.00 72.50 ATOM 10 CG GLU J 85 -52.049 10.531 77.455 1.00100.73 ATOM 11 CD GLU J 85 -51.534 10.554 76.030 1.00118.83 ATOM 12 OE1 GLU J 85 -51.165 11.646 75.536 1.00112.25 ATOM 13 OE2 GLU J 85 -51.489 9.454 75.420 1.00130.11 ATOM 14 N ARG J 86 -53.657 13.917 80.073 1.00 84.14 ATOM 15 CA ARG J 86 -54.672 14.962 80.087 1.00 73.48 ATOM 16 C ARG J 86 -54.033 16.202 79.464 1.00 67.44 ATOM 17 O ARG J 86 -53.577 17.110 80.174 1.00 92.44 ATOM 18 CB ARG J 86 -55.192 15.224 81.502 1.00 74.59 ATOM 19 CG ARG J 86 -55.765 13.991 82.179 1.00 82.10 ATOM 20 CD ARG J 86 -56.332 14.298 83.548 1.00 90.43 ATOM 21 NE ARG J 86 -56.790 13.086 84.224 1.00101.94 ATOM 22 CZ ARG J 86 -58.069 12.783 84.441 1.00110.79 ATOM 23 NH1 ARG J 86 -59.020 13.611 84.034 1.00105.71 ATOM 24 NH2 ARG J 86 -58.397 11.653 85.062 1.00117.06 ATOM 25 N PRO J 87 -53.880 16.215 78.121 1.00 96.56 ATOM 26 CA PRO J 87 -53.140 17.292 77.445 1.00 70.05 ATOM 27 C PRO J 87 -53.895 18.586 77.183 1.00 77.72 ATOM 28 O PRO J 87 -53.686 19.172 76.119 1.00 71.28 ATOM 29 CB PRO J 87 -52.810 16.668 76.090 1.00 65.62 ATOM 30 CG PRO J 87 -53.834 15.666 75.863 1.00 60.66 ATOM 31 CD PRO J 87 -54.295 15.160 77.182 1.00 75.32 ATOM 32 N PHE J 88 -54.779 19.039 78.065 1.00 89.08 ATOM 33 CA PHE J 88 -55.510 20.284 77.815 1.00 84.78 ATOM 34 C PHE J 88 -55.785 20.898 79.175 1.00 86.82 ATOM 35 O PHE J 88 -56.716 20.471 79.864 1.00 83.15 ATOM 36 CB PHE J 88 -56.800 20.042 77.049 1.00 76.73 ATOM 37 CG PHE J 88 -56.591 19.578 75.640 1.00 77.19 ATOM 38 CD1 PHE J 88 -56.741 18.240 75.307 1.00 78.25 ATOM 39 CD2 PHE J 88 -56.249 20.475 74.647 1.00 78.39 ATOM 40 CE1 PHE J 88 -56.562 17.806 73.996 1.00 78.21 ATOM 41 CE2 PHE J 88 -56.079 20.053 73.339 1.00 79.02 ATOM 42 CZ PHE J 88 -56.233 18.723 73.009 1.00 78.52 ATOM 43 N GLN J 89 -55.016 21.921 79.515 1.00 93.96 ATOM 44 CA GLN J 89 -54.961 22.434 80.869 1.00 93.04 ATOM 45 C GLN J 89 -55.866 23.646 80.983 1.00 89.06 ATOM 46 O GLN J 89 -55.981 24.439 80.043 1.00 87.17 ATOM 47 CB GLN J 89 -53.521 22.808 81.245 1.00 99.81 ATOM 48 CG GLN J 89 -52.814 21.833 82.212 1.00104.23 ATOM 49 CD GLN J 89 -53.203 22.011 83.680 1.00106.74 ATOM 50 OE1 GLN J 89 -53.878 22.984 84.058 1.00102.78 ATOM 51 NE2 GLN J 89 -52.763 21.064 84.521 1.00112.50 ATOM 52 N CYS J 90 -56.508 23.770 82.135 1.00 76.86 ATOM 53 CA CYS J 90 -57.337 24.922 82.471 1.00 74.95 ATOM 54 C CYS J 90 -56.464 26.021 83.072 1.00 79.46 ATOM 55 O CYS J 90 -55.848 25.824 84.126 1.00 82.42 ATOM 56 CB CYS J 90 -58.443 24.495 83.432 1.00 71.64 ATOM 57 SG CYS J 90 -59.585 25.766 83.936 1.00 69.31 ATOM 58 N SER J 91 -56.343 27.148 82.356 1.00 91.67 ATOM 59 CA SER J 91 -55.588 28.312 82.826 1.00 98.67 ATOM 60 C SER J 91 -56.021 28.804 84.201 1.00100.03 ATOM 61 O SER J 91 -55.279 29.552 84.846 1.00105.35 ATOM 62 CB SER J 91 -55.738 29.463 81.827 1.00101.39 ATOM 63 OG SER J 91 -57.112 29.709 81.544 1.00102.48 ATOM 64 N LEU J 92 -57.213 28.426 84.644 1.00 92.04 ATOM 65 CA LEU J 92 -57.808 28.937 85.865 1.00 88.76 ATOM 66 C LEU J 92 -57.849 27.934 87.017 1.00 84.30 ATOM 67 O LEU J 92 -58.156 28.348 88.140 1.00 87.68 ATOM 68 CB LEU J 92 -59.230 29.429 85.551 1.00 87.11 ATOM 69 CG LEU J 92 -59.443 30.883 85.100 1.00 89.49 ATOM 70 CD1 LEU J 92 -58.386 31.349 84.136 1.00 95.75 ATOM 71 CD2 LEU J 92 -60.812 31.015 84.450 1.00 89.08 ATOM 72 N CYS J 93 -57.549 26.651 86.792 1.00 79.74 ATOM 73 CA CYS J 93 -57.518 25.670 87.887 1.00 82.96 ATOM 74 C CYS J 93 -56.668 24.469 87.466 1.00 85.18 ATOM 75 O CYS J 93 -56.018 24.482 86.414 1.00 86.55 ATOM 76 CB CYS J 93 -58.936 25.287 88.345 1.00 84.82 ATOM 77 SG CYS J 93 -59.918 24.165 87.312 1.00 90.86 ATOM 78 N SER J 94 -56.690 23.409 88.287 1.00 87.03 ATOM 79 CA SER J 94 -55.817 22.254 88.078 1.00 86.98 ATOM 80 C SER J 94 -56.347 21.263 87.053 1.00 83.55 ATOM 81 O SER J 94 -55.595 20.373 86.645 1.00 86.60 ATOM 82 CB SER J 94 -55.555 21.526 89.406 1.00 91.14 ATOM 83 OG SER J 94 -56.711 21.453 90.229 1.00 90.90 ATOM 84 N TYR J 95 -57.606 21.394 86.641 1.00 76.89 ATOM 85 CA TYR J 95 -58.243 20.424 85.761 1.00 73.76 ATOM 86 C TYR J 95 -57.517 20.329 84.426 1.00 74.68 ATOM 87 O TYR J 95 -56.989 21.312 83.902 1.00 75.90 ATOM 88 CB TYR J 95 -59.688 20.833 85.502 1.00 68.79 ATOM 89 CG TYR J 95 -60.419 19.960 84.508 1.00 65.69 ATOM 90 CD1 TYR J 95 -60.747 18.651 84.823 1.00 65.62 ATOM 91 CD2 TYR J 95 -60.747 20.431 83.241 1.00 63.41 ATOM 92 CE1 TYR J 95 -61.426 17.839 83.917 1.00 63.25 ATOM 93 CE2 TYR J 95 -61.414 19.621 82.330 1.00 60.96 ATOM 94 CZ TYR J 95 -61.749 18.333 82.676 1.00 60.90 ATOM 95 OH TYR J 95 -62.413 17.534 81.792 1.00 58.95 ATOM 96 N ALA J 96 -57.542 19.138 83.851 1.00 83.82 ATOM 97 CA ALA J 96 -56.934 18.921 82.552 1.00 87.10 ATOM 98 C ALA J 96 -57.686 17.791 81.874 1.00 88.26 ATOM 99 O ALA J 96 -57.824 16.717 82.467 1.00 94.53 ATOM 100 CB ALA J 96 -55.451 18.576 82.699 1.00 91.96 ATOM 101 N SER J 97 -58.170 18.012 80.654 1.00 81.30 ATOM 102 CA SER J 97 -59.039 17.023 80.034 1.00 78.80 ATOM 103 C SER J 97 -58.308 16.262 78.938 1.00 81.92 ATOM 104 O SER J 97 -57.248 16.677 78.455 1.00 80.58 ATOM 105 CB SER J 97 -60.268 17.654 79.412 1.00 76.50 ATOM 106 OG SER J 97 -59.995 17.905 78.053 1.00 76.84 ATOM 107 N ARG J 98 -58.889 15.116 78.557 1.00 93.53 ATOM 108 CA ARG J 98 -58.286 14.293 77.513 1.00 93.04 ATOM 109 C ARG J 98 -58.448 14.920 76.134 1.00 85.95 ATOM 110 O ARG J 98 -57.675 14.604 75.224 1.00 88.12 ATOM 111 CB ARG J 98 -58.887 12.885 77.487 1.00 98.07 ATOM 112 CG ARG J 98 -58.986 12.151 78.823 1.00103.92 ATOM 113 CD ARG J 98 -57.741 11.325 79.136 1.00109.80 ATOM 114 NE ARG J 98 -57.617 11.011 80.560 1.00112.82 ATOM 115 CZ ARG J 98 -58.317 10.057 81.171 1.00115.34 ATOM 116 NH1 ARG J 98 -59.169 9.310 80.479 1.00115.85 ATOM 117 NH2 ARG J 98 -58.166 9.837 82.472 1.00118.70 ATOM 118 N ASP J 99 -59.466 15.750 75.926 1.00 69.90 ATOM 119 CA ASP J 99 -59.717 16.267 74.591 1.00 72.06 ATOM 120 C ASP J 99 -60.201 17.711 74.678 1.00 70.52 ATOM 121 O ASP J 99 -60.506 18.226 75.760 1.00 70.93 ATOM 122 CB ASP J 99 -60.745 15.382 73.880 1.00 69.98 ATOM 123 CG ASP J 99 -62.179 15.801 74.179 1.00 68.85 ATOM 124 OD1 ASP J 99 -63.031 15.732 73.258 1.00 66.34 ATOM 125 OD2 ASP J 99 -62.458 16.212 75.335 1.00 71.10 ATOM 126 N THR J 100 -60.359 18.346 73.511 1.00 74.64 ATOM 127 CA THR J 100 -60.624 19.783 73.483 1.00 74.00 ATOM 128 C THR J 100 -62.016 20.123 74.016 1.00 71.28 ATOM 129 O THR J 100 -62.180 21.138 74.711 1.00 69.08 ATOM 130 CB THR J 100 -60.441 20.334 72.058 1.00 74.09 ATOM 131 OG1 THR J 100 -61.660 20.157 71.312 1.00 77.77 ATOM 132 CG2 THR J 100 -59.288 19.637 71.347 1.00 72.80 ATOM 133 N TYR J 101 -63.033 19.303 73.704 1.00 59.93 ATOM 134 CA TYR J 101 -64.402 19.693 74.063 1.00 61.33 ATOM 135 C TYR J 101 -64.624 19.691 75.570 1.00 63.15 ATOM 136 O TYR J 101 -65.277 20.600 76.104 1.00 59.10 ATOM 137 CB TYR J 101 -65.444 18.778 73.423 1.00 56.76 ATOM 138 CG TYR J 101 -66.874 19.113 73.867 1.00 51.55 ATOM 139 CD1 TYR J 101 -67.444 20.327 73.539 1.00 54.83 ATOM 140 CD2 TYR J 101 -67.652 18.204 74.543 1.00 50.79 ATOM 141 CE1 TYR J 101 -68.712 20.655 73.895 1.00 52.07 ATOM 142 CE2 TYR J 101 -68.957 18.517 74.914 1.00 57.43 ATOM 143 CZ TYR J 101 -69.485 19.757 74.585 1.00 57.32 ATOM 144 OH TYR J 101 -70.781 20.125 74.934 1.00 57.50 ATOM 145 N LYS J 102 -64.092 18.678 76.266 1.00 65.59 ATOM 146 CA LYS J 102 -64.290 18.592 77.704 1.00 63.13 ATOM 147 C LYS J 102 -63.693 19.816 78.415 1.00 62.25 ATOM 148 O LYS J 102 -64.239 20.273 79.427 1.00 65.94 ATOM 149 CB LYS J 102 -63.727 17.267 78.227 1.00 61.68 ATOM 150 CG LYS J 102 -64.807 16.177 78.391 1.00 59.97 ATOM 151 CD LYS J 102 -64.273 14.775 78.060 1.00 60.95 ATOM 152 CE LYS J 102 -63.249 14.333 79.095 1.00 68.40 ATOM 153 NZ LYS J 102 -62.511 13.032 78.834 1.00 76.95 ATOM 154 N LEU J 103 -62.660 20.440 77.845 1.00 71.99 ATOM 155 CA LEU J 103 -62.142 21.649 78.474 1.00 75.34 ATOM 156 C LEU J 103 -63.081 22.833 78.260 1.00 78.86 ATOM 157 O LEU J 103 -63.362 23.594 79.200 1.00 83.56 ATOM 158 CB LEU J 103 -60.781 21.997 77.923 1.00 73.92 ATOM 159 CG LEU J 103 -59.734 22.490 78.917 1.00 76.54 ATOM 160 CD1 LEU J 103 -58.544 22.891 78.098 1.00 86.24 ATOM 161 CD2 LEU J 103 -60.193 23.659 79.737 1.00 77.49 ATOM 162 N LYS J 104 -63.560 23.030 77.031 1.00 83.42 ATOM 163 CA LYS J 104 -64.491 24.132 76.829 1.00 82.67 ATOM 164 C LYS J 104 -65.746 23.959 77.680 1.00 79.02 ATOM 165 O LYS J 104 -66.341 24.943 78.106 1.00 80.05 ATOM 166 CB LYS J 104 -64.801 24.326 75.344 1.00 85.27 ATOM 167 CG LYS J 104 -65.417 25.729 75.095 1.00 91.24 ATOM 168 CD LYS J 104 -66.001 26.057 73.696 1.00 95.47 ATOM 169 CE LYS J 104 -64.816 26.342 72.723 1.00 95.03 ATOM 170 NZ LYS J 104 -65.081 26.663 71.255 1.00 84.59 ATOM 171 N ARG J 105 -66.173 22.715 77.907 1.00 57.72 ATOM 172 CA ARG J 105 -67.345 22.463 78.735 1.00 52.66 ATOM 173 C ARG J 105 -67.029 22.707 80.202 1.00 57.11 ATOM 174 O ARG J 105 -67.898 23.157 80.965 1.00 61.75 ATOM 175 CB ARG J 105 -67.855 21.046 78.506 1.00 50.14 ATOM 176 CG ARG J 105 -69.166 20.758 79.131 1.00 48.79 ATOM 177 CD ARG J 105 -69.517 19.341 78.897 1.00 48.35 ATOM 178 NE ARG J 105 -68.627 18.474 79.653 1.00 51.10 ATOM 179 CZ ARG J 105 -68.692 17.150 79.653 1.00 51.61 ATOM 180 NH1 ARG J 105 -69.613 16.527 78.938 1.00 52.65 ATOM 181 NH2 ARG J 105 -67.827 16.449 80.367 1.00 54.08 ATOM 182 N HIS J 106 -65.783 22.464 80.607 1.00 64.68 ATOM 183 CA HIS J 106 -65.352 22.808 81.953 1.00 61.24 ATOM 184 C HIS J 106 -65.357 24.314 82.172 1.00 63.93 ATOM 185 O HIS J 106 -65.654 24.771 83.284 1.00 67.29 ATOM 186 CB HIS J 106 -63.963 22.229 82.192 1.00 65.40 ATOM 187 CG HIS J 106 -63.255 22.817 83.362 1.00 70.90 ATOM 188 ND1 HIS J 106 -63.614 22.555 84.665 1.00 70.78 ATOM 189 CD2 HIS J 106 -62.209 23.674 83.422 1.00 72.33 ATOM 190 CE1 HIS J 106 -62.807 23.213 85.480 1.00 72.57 ATOM 191 NE2 HIS J 106 -61.945 23.901 84.750 1.00 76.46 ATOM 192 N MET J 107 -65.067 25.096 81.121 1.00 60.41 ATOM 193 CA MET J 107 -65.012 26.553 81.256 1.00 63.97 ATOM 194 C MET J 107 -66.311 27.128 81.798 1.00 63.37 ATOM 195 O MET J 107 -66.305 28.207 82.410 1.00 68.85 ATOM 196 CB MET J 107 -64.690 27.211 79.918 1.00 67.51 ATOM 197 CG MET J 107 -63.280 27.723 79.762 1.00 74.16 ATOM 198 SD MET J 107 -62.055 27.065 80.916 1.00 77.37 ATOM 199 CE MET J 107 -60.547 27.397 80.010 1.00 71.11 ATOM 200 N ARG J 108 -67.435 26.445 81.558 1.00 62.15 ATOM 201 CA ARG J 108 -68.708 26.895 82.111 1.00 65.45 ATOM 202 C ARG J 108 -68.685 26.949 83.646 1.00 62.07 ATOM 203 O ARG J 108 -69.307 27.832 84.254 1.00 59.31 ATOM 204 CB ARG J 108 -69.822 25.969 81.644 1.00 61.00 ATOM 205 CG ARG J 108 -69.878 25.737 80.158 1.00 62.61 ATOM 206 CD ARG J 108 -71.298 25.471 79.731 1.00 60.71 ATOM 207 NE ARG J 108 -71.461 24.198 79.033 1.00 58.02 ATOM 208 CZ ARG J 108 -71.069 23.970 77.792 1.00 58.21 ATOM 209 NH1 ARG J 108 -70.472 24.923 77.096 1.00 59.96 ATOM 210 NH2 ARG J 108 -71.274 22.789 77.255 1.00 55.99 ATOM 211 N THR J 109 -67.961 26.033 84.300 1.00 57.99 ATOM 212 CA THR J 109 -67.973 26.077 85.760 1.00 60.08 ATOM 213 C THR J 109 -67.285 27.335 86.276 1.00 65.75 ATOM 214 O THR J 109 -67.504 27.734 87.424 1.00 64.88 ATOM 215 CB THR J 109 -67.287 24.869 86.372 1.00 58.29 ATOM 216 OG1 THR J 109 -65.869 25.037 86.264 1.00 65.05 ATOM 217 CG2 THR J 109 -67.692 23.607 85.654 1.00 55.53 ATOM 218 N HIS J 110 -66.383 27.911 85.486 1.00 70.41 ATOM 219 CA HIS J 110 -65.777 29.178 85.869 1.00 73.58 ATOM 220 C HIS J 110 -66.657 30.359 85.494 1.00 78.49 ATOM 221 O HIS J 110 -66.856 31.273 86.303 1.00 78.63 ATOM 222 CB HIS J 110 -64.409 29.305 85.211 1.00 78.22 ATOM 223 CG HIS J 110 -63.433 28.294 85.700 1.00 75.32 ATOM 224 ND1 HIS J 110 -63.109 28.167 87.030 1.00 73.57 ATOM 225 CD2 HIS J 110 -62.788 27.293 85.058 1.00 80.05 ATOM 226 CE1 HIS J 110 -62.254 27.168 87.179 1.00 74.10 ATOM 227 NE2 HIS J 110 -62.047 26.618 85.998 1.00 76.27 ATOM 228 N SER J 111 -67.165 30.368 84.258 1.00 81.39 ATOM 229 CA SER J 111 -68.003 31.481 83.824 1.00 80.44 ATOM 230 C SER J 111 -69.375 31.452 84.474 1.00 74.80 ATOM 231 O SER J 111 -70.017 32.503 84.588 1.00 80.04 ATOM 232 CB SER J 111 -68.177 31.485 82.311 1.00 80.50 ATOM 233 OG SER J 111 -68.913 30.353 81.896 1.00 76.78 ATOM 234 N GLY J 112 -69.865 30.267 84.853 1.00 65.91 ATOM 235 CA GLY J 112 -71.241 30.123 85.302 1.00 76.16 ATOM 236 C GLY J 112 -72.279 30.162 84.197 1.00 76.25 ATOM 237 O GLY J 112 -73.467 30.331 84.483 1.00 68.39 ATOM 238 N GLU J 113 -71.865 30.007 82.941 1.00 56.15 ATOM 239 CA GLU J 113 -72.786 30.085 81.814 1.00 58.18 ATOM 240 C GLU J 113 -73.711 28.882 81.820 1.00 61.54 ATOM 241 O GLU J 113 -73.330 27.783 82.225 1.00 70.91 ATOM 242 CB GLU J 113 -72.012 30.183 80.491 1.00 66.95 ATOM 243 CG GLU J 113 -72.840 30.541 79.282 1.00 77.34 ATOM 244 CD GLU J 113 -72.023 30.585 77.967 1.00 82.48 ATOM 245 OE1 GLU J 113 -70.797 30.287 78.000 1.00 79.40 ATOM 246 OE2 GLU J 113 -72.602 30.939 76.901 1.00 77.85 ATOM 247 ZN ZN J -60.843 25.188 85.625 1.00 89.51 TER