HEADER DNA BINDING PROTEIN 31-DEC-69 5YEG TITLE Crystal structure of CTCF ZFs4-8-Hs5-1a complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.00 ANGSTORMS DBREF 5YEG A 349 490 UNP P49711 CTCF_HUMAN 349 490 SEQRES 1 A 28 GLY GLU ARG PRO PHE GLN CYS SER LEU CYS SER TYR ALA SEQRES 2 A 28 SER ARG ASP THR TYR LYS LEU LYS ARG HIS MET ARG THR SEQRES 3 A 28 HIS SER ATOM 1 N GLY A 27 3.783 -21.179 -5.787 1.00 41.82 ATOM 2 CA GLY A 27 4.701 -21.953 -4.976 1.00 36.34 ATOM 3 C GLY A 27 5.297 -23.165 -5.653 1.00 37.69 ATOM 4 O GLY A 27 5.952 -23.972 -4.986 1.00 39.56 ATOM 5 N GLU A 28 5.098 -23.322 -6.959 1.00 37.18 ATOM 6 CA GLU A 28 5.690 -24.447 -7.670 1.00 35.64 ATOM 7 C GLU A 28 7.209 -24.314 -7.698 1.00 35.92 ATOM 8 O GLU A 28 7.745 -23.290 -8.136 1.00 34.26 ATOM 9 CB GLU A 28 5.133 -24.531 -9.087 1.00 33.53 ATOM 10 CG GLU A 28 5.642 -25.731 -9.869 1.00 44.08 ATOM 11 CD GLU A 28 5.321 -25.662 -11.360 1.00 43.79 ATOM 12 OE1 GLU A 28 5.800 -26.544 -12.107 1.00 46.39 ATOM 13 OE2 GLU A 28 4.611 -24.723 -11.791 1.00 45.17 ATOM 14 N ARG A 29 7.902 -25.356 -7.220 1.00 32.53 ATOM 15 CA ARG A 29 9.363 -25.414 -7.196 1.00 33.25 ATOM 16 C ARG A 29 9.831 -26.605 -8.030 1.00 30.75 ATOM 17 O ARG A 29 10.122 -27.676 -7.480 1.00 32.07 ATOM 18 CB ARG A 29 9.885 -25.518 -5.763 1.00 30.70 ATOM 19 CG ARG A 29 9.504 -24.346 -4.859 1.00 31.79 ATOM 20 CD ARG A 29 9.866 -24.654 -3.412 1.00 35.70 ATOM 21 NE ARG A 29 9.573 -23.546 -2.503 1.00 35.76 ATOM 22 CZ ARG A 29 10.438 -22.582 -2.199 1.00 40.89 ATOM 23 NH1 ARG A 29 11.658 -22.578 -2.737 1.00 41.53 ATOM 24 NH2 ARG A 29 10.085 -21.614 -1.363 1.00 49.48 ATOM 25 N PRO A 30 9.969 -26.442 -9.350 1.00 43.89 ATOM 26 CA PRO A 30 10.244 -27.611 -10.211 1.00 44.95 ATOM 27 C PRO A 30 11.651 -28.164 -10.095 1.00 45.05 ATOM 28 O PRO A 30 11.874 -29.308 -10.506 1.00 45.22 ATOM 29 CB PRO A 30 9.992 -27.081 -11.631 1.00 44.17 ATOM 30 CG PRO A 30 9.233 -25.795 -11.458 1.00 45.20 ATOM 31 CD PRO A 30 9.689 -25.231 -10.136 1.00 44.29 ATOM 32 N PHE A 31 12.615 -27.405 -9.582 1.00 28.53 ATOM 33 CA PHE A 31 14.021 -27.767 -9.723 1.00 27.82 ATOM 34 C PHE A 31 14.540 -28.206 -8.363 1.00 27.53 ATOM 35 O PHE A 31 14.996 -27.396 -7.555 1.00 25.92 ATOM 36 CB PHE A 31 14.803 -26.608 -10.326 1.00 25.62 ATOM 37 CG PHE A 31 14.242 -26.161 -11.641 1.00 26.93 ATOM 38 CD1 PHE A 31 14.479 -26.902 -12.787 1.00 28.44 ATOM 39 CD2 PHE A 31 13.417 -25.046 -11.723 1.00 27.14 ATOM 40 CE1 PHE A 31 13.937 -26.519 -14.016 1.00 30.72 ATOM 41 CE2 PHE A 31 12.870 -24.656 -12.943 1.00 29.12 ATOM 42 CZ PHE A 31 13.135 -25.396 -14.092 1.00 29.58 ATOM 43 N GLN A 32 14.463 -29.511 -8.134 1.00 27.23 ATOM 44 CA GLN A 32 14.729 -30.115 -6.841 1.00 27.22 ATOM 45 C GLN A 32 16.180 -30.534 -6.688 1.00 26.00 ATOM 46 O GLN A 32 16.765 -31.145 -7.586 1.00 28.13 ATOM 47 CB GLN A 32 13.838 -31.339 -6.650 1.00 28.55 ATOM 48 CG GLN A 32 12.367 -31.025 -6.750 1.00 28.50 ATOM 49 CD GLN A 32 11.514 -32.258 -6.547 1.00 35.30 ATOM 50 OE1 GLN A 32 12.025 -33.332 -6.238 1.00 34.57 ATOM 51 NE2 GLN A 32 10.212 -32.108 -6.714 1.00 36.64 ATOM 52 N CYS A 33 16.737 -30.252 -5.515 1.00 24.66 ATOM 53 CA CYS A 33 18.058 -30.766 -5.188 1.00 26.60 ATOM 54 C CYS A 33 17.976 -32.275 -4.994 1.00 29.17 ATOM 55 O CYS A 33 17.055 -32.776 -4.347 1.00 27.12 ATOM 56 CB CYS A 33 18.592 -30.099 -3.923 1.00 25.10 ATOM 57 SG CYS A 33 20.194 -30.744 -3.407 1.00 25.50 ATOM 58 N SER A 34 18.930 -33.006 -5.569 1.00 29.51 ATOM 59 CA SER A 34 18.970 -34.457 -5.395 1.00 31.30 ATOM 60 C SER A 34 19.565 -34.892 -4.057 1.00 32.80 ATOM 61 O SER A 34 19.514 -36.085 -3.738 1.00 33.94 ATOM 62 CB SER A 34 19.754 -35.097 -6.539 1.00 34.33 ATOM 63 OG SER A 34 21.052 -34.529 -6.639 1.00 33.71 ATOM 64 N LEU A 35 20.144 -33.971 -3.277 1.00 29.88 ATOM 65 CA LEU A 35 20.816 -34.330 -2.036 1.00 28.13 ATOM 66 C LEU A 35 20.111 -33.856 -0.773 1.00 31.73 ATOM 67 O LEU A 35 20.327 -34.450 0.286 1.00 30.56 ATOM 68 CB LEU A 35 22.259 -33.794 -2.021 1.00 28.69 ATOM 69 CG LEU A 35 23.195 -34.321 -3.113 1.00 31.31 ATOM 70 CD1 LEU A 35 24.627 -33.857 -2.866 1.00 31.00 ATOM 71 CD2 LEU A 35 23.132 -35.841 -3.166 1.00 31.44 ATOM 72 N CYS A 36 19.269 -32.832 -0.847 1.00 28.65 ATOM 73 CA CYS A 36 18.532 -32.407 0.330 1.00 29.05 ATOM 74 C CYS A 36 17.148 -31.975 -0.134 1.00 27.64 ATOM 75 O CYS A 36 16.796 -32.137 -1.304 1.00 28.06 ATOM 76 CB CYS A 36 19.293 -31.309 1.088 1.00 27.88 ATOM 77 SG CYS A 36 19.189 -29.628 0.393 1.00 23.39 ATOM 78 N SER A 37 16.370 -31.402 0.778 1.00 28.14 ATOM 79 CA SER A 37 14.982 -31.070 0.478 1.00 27.51 ATOM 80 C SER A 37 14.811 -29.726 -0.229 1.00 27.35 ATOM 81 O SER A 37 13.692 -29.414 -0.651 1.00 26.17 ATOM 82 CB SER A 37 14.148 -31.122 1.770 1.00 29.57 ATOM 83 OG SER A 37 14.504 -30.086 2.665 1.00 29.28 ATOM 84 N TYR A 38 15.878 -28.939 -0.413 1.00 27.60 ATOM 85 CA TYR A 38 15.722 -27.671 -1.119 1.00 24.45 ATOM 86 C TYR A 38 15.193 -27.902 -2.535 1.00 25.05 ATOM 87 O TYR A 38 15.590 -28.849 -3.222 1.00 25.92 ATOM 88 CB TYR A 38 17.054 -26.905 -1.185 1.00 22.17 ATOM 89 CG TYR A 38 16.944 -25.663 -2.040 1.00 23.06 ATOM 90 CD1 TYR A 38 16.232 -24.552 -1.592 1.00 24.52 ATOM 91 CD2 TYR A 38 17.505 -25.619 -3.323 1.00 23.29 ATOM 92 CE1 TYR A 38 16.097 -23.415 -2.378 1.00 26.99 ATOM 93 CE2 TYR A 38 17.375 -24.484 -4.125 1.00 24.49 ATOM 94 CZ TYR A 38 16.684 -23.383 -3.641 1.00 23.18 ATOM 95 OH TYR A 38 16.541 -22.270 -4.427 1.00 22.25 ATOM 96 N ALA A 39 14.275 -27.034 -2.970 1.00 22.66 ATOM 97 CA ALA A 39 13.819 -27.022 -4.355 1.00 25.44 ATOM 98 C ALA A 39 13.614 -25.579 -4.785 1.00 25.27 ATOM 99 O ALA A 39 13.129 -24.759 -4.000 1.00 25.65 ATOM 100 CB ALA A 39 12.516 -27.826 -4.539 1.00 25.45 ATOM 101 N SER A 40 13.976 -25.273 -6.034 1.00 25.04 ATOM 102 CA SER A 40 13.966 -23.912 -6.543 1.00 24.59 ATOM 103 C SER A 40 12.842 -23.687 -7.549 1.00 25.81 ATOM 104 O SER A 40 12.425 -24.603 -8.273 1.00 25.94 ATOM 105 CB SER A 40 15.301 -23.566 -7.213 1.00 23.11 ATOM 106 OG SER A 40 15.227 -22.274 -7.788 1.00 23.23 ATOM 107 N ARG A 41 12.380 -22.432 -7.600 1.00 24.56 ATOM 108 CA ARG A 41 11.449 -22.010 -8.638 1.00 25.88 ATOM 109 C ARG A 41 12.115 -21.886 -10.007 1.00 26.00 ATOM 110 O ARG A 41 11.413 -21.939 -11.020 1.00 26.51 ATOM 111 CB ARG A 41 10.793 -20.675 -8.253 1.00 27.56 ATOM 112 CG ARG A 41 9.744 -20.798 -7.141 1.00 30.90 ATOM 113 CD ARG A 41 9.199 -19.442 -6.672 1.00 30.33 ATOM 114 NE ARG A 41 8.342 -19.578 -5.487 1.00 32.29 ATOM 115 CZ ARG A 41 8.795 -19.598 -4.234 1.00 32.58 ATOM 116 NH1 ARG A 41 10.097 -19.493 -3.994 1.00 32.24 ATOM 117 NH2 ARG A 41 7.949 -19.732 -3.216 1.00 33.48 ATOM 118 N ASP A 42 13.443 -21.744 -10.072 1.00 22.96 ATOM 119 CA ASP A 42 14.116 -21.587 -11.357 1.00 24.54 ATOM 120 C ASP A 42 15.436 -22.358 -11.357 1.00 26.25 ATOM 121 O ASP A 42 15.917 -22.815 -10.312 1.00 24.41 ATOM 122 CB ASP A 42 14.318 -20.092 -11.701 1.00 25.59 ATOM 123 CG ASP A 42 15.451 -19.408 -10.897 1.00 27.58 ATOM 124 OD1 ASP A 42 15.987 -19.963 -9.918 1.00 24.40 ATOM 125 OD2 ASP A 42 15.803 -18.265 -11.265 1.00 29.34 ATOM 126 N THR A 43 16.039 -22.489 -12.547 1.00 23.93 ATOM 127 CA THR A 43 17.242 -23.311 -12.669 1.00 25.57 ATOM 128 C THR A 43 18.430 -22.696 -11.923 1.00 24.88 ATOM 129 O THR A 43 19.225 -23.414 -11.290 1.00 24.33 ATOM 130 CB THR A 43 17.588 -23.528 -14.149 1.00 26.86 ATOM 131 OG1 THR A 43 17.744 -22.261 -14.812 1.00 26.64 ATOM 132 CG2 THR A 43 16.514 -24.364 -14.859 1.00 27.57 ATOM 133 N TYR A 44 18.582 -21.373 -12.005 1.00 24.50 ATOM 134 CA TYR A 44 19.783 -20.737 -11.462 1.00 23.98 ATOM 135 C TYR A 44 19.924 -20.970 -9.958 1.00 22.74 ATOM 136 O TYR A 44 21.020 -21.273 -9.471 1.00 22.72 ATOM 137 CB TYR A 44 19.793 -19.239 -11.757 1.00 24.22 ATOM 138 CG TYR A 44 20.924 -18.534 -11.021 1.00 25.84 ATOM 139 CD1 TYR A 44 22.235 -18.627 -11.468 1.00 25.31 ATOM 140 CD2 TYR A 44 20.682 -17.832 -9.837 1.00 26.14 ATOM 141 CE1 TYR A 44 23.277 -18.004 -10.777 1.00 24.36 ATOM 142 CE2 TYR A 44 21.707 -17.213 -9.152 1.00 22.63 ATOM 143 CZ TYR A 44 22.996 -17.304 -9.614 1.00 23.34 ATOM 144 OH TYR A 44 24.006 -16.662 -8.908 1.00 22.74 ATOM 145 N LYS A 45 18.842 -20.777 -9.188 1.00 23.48 ATOM 146 CA LYS A 45 19.014 -20.874 -7.740 1.00 21.98 ATOM 147 C LYS A 45 19.298 -22.312 -7.310 1.00 21.97 ATOM 148 O LYS A 45 20.000 -22.525 -6.319 1.00 21.03 ATOM 149 CB LYS A 45 17.808 -20.284 -7.008 1.00 21.65 ATOM 150 CG LYS A 45 17.731 -18.752 -7.154 1.00 22.93 ATOM 151 CD LYS A 45 16.742 -18.109 -6.176 1.00 23.27 ATOM 152 CE LYS A 45 15.281 -18.284 -6.647 1.00 24.25 ATOM 153 NZ LYS A 45 15.102 -17.734 -8.029 1.00 25.31 ATOM 154 N LEU A 46 18.817 -23.309 -8.064 1.00 22.71 ATOM 155 CA LEU A 46 19.237 -24.679 -7.789 1.00 22.84 ATOM 156 C LEU A 46 20.732 -24.858 -8.027 1.00 23.05 ATOM 157 O LEU A 46 21.417 -25.454 -7.194 1.00 22.75 ATOM 158 CB LEU A 46 18.441 -25.691 -8.618 1.00 24.58 ATOM 159 CG LEU A 46 18.902 -27.149 -8.435 1.00 23.81 ATOM 160 CD1 LEU A 46 18.751 -27.646 -6.989 1.00 25.13 ATOM 161 CD2 LEU A 46 18.154 -28.074 -9.395 1.00 27.49 ATOM 162 N LYS A 47 21.263 -24.385 -9.169 1.00 22.78 ATOM 163 CA LYS A 47 22.713 -24.522 -9.375 1.00 24.35 ATOM 164 C LYS A 47 23.499 -23.818 -8.267 1.00 22.13 ATOM 165 O LYS A 47 24.457 -24.376 -7.687 1.00 23.44 ATOM 166 CB LYS A 47 23.122 -23.974 -10.747 1.00 24.68 ATOM 167 CG LYS A 47 22.576 -24.786 -11.923 1.00 28.59 ATOM 168 CD LYS A 47 22.848 -24.073 -13.253 1.00 27.19 ATOM 169 CE LYS A 47 22.396 -24.909 -14.441 1.00 30.32 ATOM 170 NZ LYS A 47 21.332 -24.235 -15.240 1.00 32.42 ATOM 171 N ARG A 48 23.085 -22.589 -7.943 1.00 22.84 ATOM 172 CA ARG A 48 23.751 -21.846 -6.883 1.00 21.97 ATOM 173 C ARG A 48 23.721 -22.631 -5.577 1.00 21.46 ATOM 174 O ARG A 48 24.715 -22.660 -4.842 1.00 20.25 ATOM 175 CB ARG A 48 23.100 -20.468 -6.729 1.00 20.50 ATOM 176 CG ARG A 48 23.892 -19.457 -5.900 1.00 20.95 ATOM 177 CD ARG A 48 23.149 -18.106 -5.752 1.00 20.21 ATOM 178 NE ARG A 48 21.815 -18.283 -5.158 1.00 20.10 ATOM 179 CZ ARG A 48 20.969 -17.285 -4.914 1.00 22.04 ATOM 180 NH1 ARG A 48 21.327 -16.035 -5.197 1.00 20.73 ATOM 181 NH2 ARG A 48 19.781 -17.534 -4.375 1.00 21.79 ATOM 182 N HIS A 49 22.588 -23.279 -5.279 1.00 20.96 ATOM 183 CA HIS A 49 22.495 -24.125 -4.092 1.00 21.56 ATOM 184 C HIS A 49 23.426 -25.331 -4.186 1.00 22.38 ATOM 185 O HIS A 49 24.058 -25.713 -3.191 1.00 21.90 ATOM 186 CB HIS A 49 21.051 -24.594 -3.893 1.00 22.37 ATOM 187 CG HIS A 49 20.901 -25.639 -2.834 1.00 22.91 ATOM 188 ND1 HIS A 49 20.914 -25.340 -1.488 1.00 23.21 ATOM 189 CD2 HIS A 49 20.760 -26.984 -2.920 1.00 23.99 ATOM 190 CE1 HIS A 49 20.754 -26.451 -0.790 1.00 23.83 ATOM 191 NE2 HIS A 49 20.661 -27.463 -1.635 1.00 25.99 ATOM 192 N MET A 50 23.535 -25.940 -5.377 1.00 23.06 ATOM 193 CA MET A 50 24.363 -27.139 -5.525 1.00 23.43 ATOM 194 C MET A 50 25.816 -26.857 -5.229 1.00 23.66 ATOM 195 O MET A 50 26.555 -27.778 -4.847 1.00 24.67 ATOM 196 CB MET A 50 24.245 -27.731 -6.937 1.00 25.39 ATOM 197 CG MET A 50 22.914 -28.348 -7.240 1.00 27.63 ATOM 198 SD MET A 50 22.496 -29.461 -5.870 1.00 32.76 ATOM 199 CE MET A 50 23.807 -30.681 -5.946 1.00 28.36 ATOM 200 N ARG A 51 26.244 -25.596 -5.376 1.00 23.12 ATOM 201 CA ARG A 51 27.614 -25.261 -4.988 1.00 20.31 ATOM 202 C ARG A 51 27.900 -25.610 -3.526 1.00 23.97 ATOM 203 O ARG A 51 29.045 -25.938 -3.179 1.00 24.97 ATOM 204 CB ARG A 51 27.877 -23.769 -5.216 1.00 23.52 ATOM 205 CG ARG A 51 27.665 -23.261 -6.641 1.00 21.85 ATOM 206 CD ARG A 51 28.000 -21.768 -6.721 1.00 22.20 ATOM 207 NE ARG A 51 27.444 -21.171 -7.927 1.00 20.75 ATOM 208 CZ ARG A 51 27.113 -19.890 -8.038 1.00 23.13 ATOM 209 NH1 ARG A 51 27.291 -19.054 -7.018 1.00 18.91 ATOM 210 NH2 ARG A 51 26.585 -19.450 -9.164 1.00 20.81 ATOM 211 N THR A 52 26.889 -25.531 -2.655 1.00 23.16 ATOM 212 CA THR A 52 27.098 -25.856 -1.248 1.00 23.68 ATOM 213 C THR A 52 27.307 -27.351 -1.023 1.00 25.17 ATOM 214 O THR A 52 27.947 -27.736 -0.044 1.00 26.79 ATOM 215 CB THR A 52 25.934 -25.353 -0.398 1.00 23.03 ATOM 216 OG1 THR A 52 24.770 -26.144 -0.629 1.00 23.66 ATOM 217 CG2 THR A 52 25.622 -23.889 -0.727 1.00 22.97 ATOM 218 N HIS A 53 26.764 -28.206 -1.891 1.00 26.26 ATOM 219 CA HIS A 53 27.029 -29.634 -1.771 1.00 28.05 ATOM 220 C HIS A 53 28.372 -29.985 -2.395 1.00 30.86 ATOM 221 O HIS A 53 29.114 -30.821 -1.866 1.00 32.33 ATOM 222 CB HIS A 53 25.909 -30.449 -2.424 1.00 27.79 ATOM 223 CG HIS A 53 24.602 -30.372 -1.695 1.00 27.63 ATOM 224 ND1 HIS A 53 24.411 -30.940 -0.454 1.00 24.94 ATOM 225 CD2 HIS A 53 23.430 -29.780 -2.022 1.00 27.15 ATOM 226 CE1 HIS A 53 23.173 -30.713 -0.054 1.00 26.91 ATOM 227 NE2 HIS A 53 22.555 -30.010 -0.987 1.00 24.03 ATOM 228 N SER A 54 28.715 -29.323 -3.495 1.00 27.12 ATOM 229 CA SER A 54 29.953 -29.624 -4.201 1.00 28.98 ATOM 230 C SER A 54 31.172 -29.013 -3.535 1.00 28.57 ATOM 231 O SER A 54 32.295 -29.454 -3.802 1.00 31.66 ATOM 232 CB SER A 54 29.883 -29.096 -5.636 1.00 31.26 ATOM 233 OG SER A 54 28.646 -29.420 -6.240 1.00 36.01 ATOM 234 ZN ZN A 20.672 -29.609 -1.461 1.00 23.85 TER