HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 5YEH TITLE Crystal struture of CTCF ZFs4-8-eCBS COMPND MOL_ID: 1; COMPND 2 MOLECULE: Transcriptional repressor CTCF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP residues ; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.33 ANGSTORMS DBREF 5YEH A 349 490 UNP P49711 CTCF_HUMAN 349 490 SEQRES 1 A 32 GLY GLU LYS PRO TYR GLU CYS TYR ILE CYS HIS ALA ARG SEQRES 2 A 32 PHE THR GLN SER GLY THR MET LYS MET HIS ILE LEU GLN SEQRES 3 A 32 LYS HIS THR GLU ASN VAL ATOM 1 N GLY A 55 29.769 -27.381 -2.137 1.00 40.99 ATOM 2 CA GLY A 55 30.623 -26.681 -1.207 1.00 53.27 ATOM 3 C GLY A 55 31.718 -25.871 -1.870 1.00 37.62 ATOM 4 O GLY A 55 32.748 -25.634 -1.250 1.00 43.82 ATOM 5 N GLU A 56 31.486 -25.347 -3.063 1.00 33.61 ATOM 6 CA GLU A 56 32.529 -24.544 -3.688 1.00 47.82 ATOM 7 C GLU A 56 32.449 -23.087 -3.276 1.00 45.74 ATOM 8 O GLU A 56 31.369 -22.519 -3.083 1.00 50.16 ATOM 9 CB GLU A 56 32.495 -24.633 -5.219 1.00 47.71 ATOM 10 CG GLU A 56 31.287 -24.036 -5.887 1.00 50.50 ATOM 11 CD GLU A 56 31.484 -23.823 -7.385 1.00 70.04 ATOM 12 OE1 GLU A 56 32.548 -24.189 -7.922 1.00 73.04 ATOM 13 OE2 GLU A 56 30.540 -23.330 -8.036 1.00 66.53 ATOM 14 N LYS A 57 33.632 -22.478 -3.166 1.00 48.80 ATOM 15 CA LYS A 57 33.783 -21.058 -2.864 1.00 42.51 ATOM 16 C LYS A 57 34.488 -20.396 -4.048 1.00 49.23 ATOM 17 O LYS A 57 35.694 -20.133 -3.993 1.00 59.42 ATOM 18 CB LYS A 57 34.559 -20.843 -1.576 1.00 43.75 ATOM 19 CG LYS A 57 34.377 -21.973 -0.618 1.00 47.03 ATOM 20 CD LYS A 57 34.245 -21.410 0.775 1.00 50.98 ATOM 21 CE LYS A 57 34.157 -22.479 1.834 1.00 62.16 ATOM 22 NZ LYS A 57 34.321 -21.847 3.180 1.00 70.63 ATOM 23 N PRO A 58 33.737 -20.033 -5.073 1.00 56.10 ATOM 24 CA PRO A 58 34.354 -19.583 -6.328 1.00 56.83 ATOM 25 C PRO A 58 34.843 -18.148 -6.323 1.00 57.65 ATOM 26 O PRO A 58 35.412 -17.715 -7.329 1.00 56.78 ATOM 27 CB PRO A 58 33.215 -19.765 -7.342 1.00 44.65 ATOM 28 CG PRO A 58 31.965 -19.875 -6.553 1.00 60.33 ATOM 29 CD PRO A 58 32.277 -19.935 -5.106 1.00 52.93 ATOM 30 N TYR A 59 34.736 -17.432 -5.208 1.00 48.77 ATOM 31 CA TYR A 59 35.180 -16.049 -5.153 1.00 43.37 ATOM 32 C TYR A 59 36.207 -15.868 -4.044 1.00 52.11 ATOM 33 O TYR A 59 36.093 -16.467 -2.970 1.00 49.82 ATOM 34 CB TYR A 59 34.003 -15.096 -4.971 1.00 42.36 ATOM 35 CG TYR A 59 32.990 -15.282 -6.073 1.00 42.06 ATOM 36 CD1 TYR A 59 33.173 -14.707 -7.313 1.00 37.23 ATOM 37 CD2 TYR A 59 31.851 -16.067 -5.864 1.00 33.15 ATOM 38 CE1 TYR A 59 32.243 -14.899 -8.322 1.00 50.61 ATOM 39 CE2 TYR A 59 30.934 -16.264 -6.843 1.00 35.13 ATOM 40 CZ TYR A 59 31.125 -15.683 -8.082 1.00 49.31 ATOM 41 OH TYR A 59 30.196 -15.879 -9.077 1.00 52.90 ATOM 42 N GLU A 60 37.237 -15.096 -4.342 1.00 37.83 ATOM 43 CA GLU A 60 38.369 -14.894 -3.454 1.00 48.03 ATOM 44 C GLU A 60 38.722 -13.420 -3.406 1.00 37.54 ATOM 45 O GLU A 60 38.844 -12.774 -4.449 1.00 51.12 ATOM 46 CB GLU A 60 39.581 -15.736 -3.893 1.00 48.81 ATOM 47 CG GLU A 60 40.912 -15.270 -3.328 1.00 58.68 ATOM 48 CD GLU A 60 41.996 -16.294 -3.600 1.00 67.33 ATOM 49 OE1 GLU A 60 43.141 -16.100 -3.149 1.00 64.35 ATOM 50 OE2 GLU A 60 41.682 -17.393 -4.122 1.00 77.99 ATOM 51 N CYS A 61 38.861 -12.896 -2.196 1.00 35.90 ATOM 52 CA CYS A 61 39.264 -11.515 -2.010 1.00 39.50 ATOM 53 C CYS A 61 40.689 -11.319 -2.530 1.00 56.89 ATOM 54 O CYS A 61 41.614 -12.007 -2.087 1.00 63.45 ATOM 55 CB CYS A 61 39.166 -11.165 -0.531 1.00 32.04 ATOM 56 SG CYS A 61 39.835 -9.574 -0.085 1.00 33.67 ATOM 57 N TYR A 62 40.866 -10.397 -3.490 1.00 57.37 ATOM 58 CA TYR A 62 42.195 -10.209 -4.083 1.00 63.45 ATOM 59 C TYR A 62 43.182 -9.541 -3.129 1.00 63.72 ATOM 60 O TYR A 62 44.330 -9.328 -3.514 1.00 82.64 ATOM 61 CB TYR A 62 42.102 -9.403 -5.391 1.00 57.76 ATOM 62 CG TYR A 62 41.809 -7.919 -5.232 1.00 63.25 ATOM 63 CD1 TYR A 62 40.615 -7.470 -4.683 1.00 70.78 ATOM 64 CD2 TYR A 62 42.735 -6.967 -5.635 1.00 63.84 ATOM 65 CE1 TYR A 62 40.358 -6.111 -4.544 1.00 76.32 ATOM 66 CE2 TYR A 62 42.484 -5.608 -5.501 1.00 65.66 ATOM 67 CZ TYR A 62 41.300 -5.187 -4.956 1.00 67.96 ATOM 68 OH TYR A 62 41.052 -3.841 -4.822 1.00 68.35 ATOM 69 N ILE A 63 42.774 -9.211 -1.910 1.00 60.80 ATOM 70 CA ILE A 63 43.616 -8.524 -0.942 1.00 55.04 ATOM 71 C ILE A 63 44.068 -9.463 0.175 1.00 56.47 ATOM 72 O ILE A 63 45.237 -9.484 0.535 1.00 42.26 ATOM 73 CB ILE A 63 42.894 -7.278 -0.377 1.00 48.12 ATOM 74 CG1 ILE A 63 42.691 -6.244 -1.487 1.00 56.37 ATOM 75 CG2 ILE A 63 43.654 -6.678 0.799 1.00 37.18 ATOM 76 CD1 ILE A 63 41.815 -5.070 -1.076 1.00 62.65 ATOM 77 N CYS A 64 43.143 -10.211 0.771 1.00 60.49 ATOM 78 CA CYS A 64 43.467 -11.113 1.874 1.00 54.19 ATOM 79 C CYS A 64 43.173 -12.578 1.567 1.00 48.09 ATOM 80 O CYS A 64 43.286 -13.425 2.466 1.00 36.64 ATOM 81 CB CYS A 64 42.679 -10.707 3.121 1.00 50.75 ATOM 82 SG CYS A 64 41.005 -11.392 3.042 1.00 67.98 ATOM 83 N HIS A 65 42.713 -12.883 0.358 1.00 63.21 ATOM 84 CA HIS A 65 42.505 -14.248 -0.126 1.00 61.77 ATOM 85 C HIS A 65 41.460 -15.043 0.676 1.00 45.36 ATOM 86 O HIS A 65 41.395 -16.265 0.560 1.00 44.11 ATOM 87 CB HIS A 65 43.834 -15.000 -0.161 1.00 61.74 ATOM 88 CG HIS A 65 44.913 -14.250 -0.875 1.00 70.90 ATOM 89 ND1 HIS A 65 44.925 -14.085 -2.243 1.00 67.09 ATOM 90 CD2 HIS A 65 46.004 -13.599 -0.407 1.00 72.02 ATOM 91 CE1 HIS A 65 45.986 -13.378 -2.588 1.00 72.84 ATOM 92 NE2 HIS A 65 46.657 -13.073 -1.494 1.00 80.16 ATOM 93 N ALA A 66 40.627 -14.405 1.492 1.00 36.59 ATOM 94 CA ALA A 66 39.500 -15.137 2.066 1.00 40.93 ATOM 95 C ALA A 66 38.563 -15.565 0.942 1.00 34.85 ATOM 96 O ALA A 66 38.511 -14.944 -0.120 1.00 30.10 ATOM 97 CB ALA A 66 38.754 -14.288 3.104 1.00 27.93 ATOM 98 N ARG A 67 37.897 -16.688 1.120 1.00 39.97 ATOM 99 CA ARG A 67 37.019 -17.162 0.059 1.00 46.34 ATOM 100 C ARG A 67 35.543 -17.046 0.443 1.00 48.91 ATOM 101 O ARG A 67 35.175 -16.972 1.624 1.00 43.28 ATOM 102 CB ARG A 67 37.356 -18.593 -0.351 1.00 55.31 ATOM 103 CG ARG A 67 38.780 -18.755 -0.920 1.00 54.53 ATOM 104 CD ARG A 67 38.910 -20.059 -1.699 1.00 56.07 ATOM 105 NE ARG A 67 39.810 -19.940 -2.851 1.00 70.25 ATOM 106 CZ ARG A 67 39.427 -19.565 -4.064 1.00 77.01 ATOM 107 NH1 ARG A 67 38.170 -19.227 -4.275 1.00 88.84 ATOM 108 NH2 ARG A 67 40.295 -19.494 -5.057 1.00 80.19 ATOM 109 N PHE A 68 34.698 -17.036 -0.588 1.00 29.63 ATOM 110 CA PHE A 68 33.295 -16.732 -0.461 1.00 37.59 ATOM 111 C PHE A 68 32.507 -17.543 -1.482 1.00 42.57 ATOM 112 O PHE A 68 33.002 -17.871 -2.569 1.00 33.56 ATOM 113 CB PHE A 68 33.013 -15.236 -0.672 1.00 33.40 ATOM 114 CG PHE A 68 33.753 -14.355 0.261 1.00 22.92 ATOM 115 CD1 PHE A 68 33.254 -14.093 1.512 1.00 27.98 ATOM 116 CD2 PHE A 68 34.978 -13.812 -0.090 1.00 44.89 ATOM 117 CE1 PHE A 68 33.935 -13.290 2.390 1.00 29.83 ATOM 118 CE2 PHE A 68 35.681 -13.013 0.798 1.00 39.20 ATOM 119 CZ PHE A 68 35.157 -12.743 2.029 1.00 27.24 ATOM 120 N THR A 69 31.263 -17.847 -1.106 1.00 24.90 ATOM 121 CA THR A 69 30.360 -18.603 -1.962 1.00 21.83 ATOM 122 C THR A 69 29.738 -17.730 -3.039 1.00 29.63 ATOM 123 O THR A 69 29.467 -18.216 -4.146 1.00 43.23 ATOM 124 CB THR A 69 29.246 -19.232 -1.129 1.00 37.84 ATOM 125 OG1 THR A 69 28.305 -19.831 -2.019 1.00 69.87 ATOM 126 CG2 THR A 69 28.540 -18.148 -0.367 1.00 31.28 ATOM 127 N GLN A 70 29.474 -16.460 -2.739 1.00 29.61 ATOM 128 CA GLN A 70 28.864 -15.565 -3.705 1.00 37.26 ATOM 129 C GLN A 70 29.670 -14.279 -3.810 1.00 37.41 ATOM 130 O GLN A 70 30.415 -13.893 -2.901 1.00 34.98 ATOM 131 CB GLN A 70 27.391 -15.235 -3.352 1.00 34.31 ATOM 132 CG GLN A 70 26.445 -16.442 -3.257 1.00 22.11 ATOM 133 CD GLN A 70 24.996 -16.045 -2.894 1.00 30.60 ATOM 134 OE1 GLN A 70 24.636 -14.865 -2.873 1.00 25.15 ATOM 135 NE2 GLN A 70 24.183 -17.036 -2.586 1.00 27.66 ATOM 136 N SER A 71 29.519 -13.633 -4.969 1.00 34.51 ATOM 137 CA SER A 71 30.274 -12.424 -5.264 1.00 33.24 ATOM 138 C SER A 71 29.829 -11.269 -4.387 1.00 41.97 ATOM 139 O SER A 71 30.667 -10.477 -3.946 1.00 35.80 ATOM 140 CB SER A 71 30.123 -12.041 -6.731 1.00 42.07 ATOM 141 OG SER A 71 31.036 -10.998 -7.064 1.00 59.09 ATOM 142 N GLY A 72 28.511 -11.126 -4.163 1.00 24.18 ATOM 143 CA GLY A 72 28.040 -10.030 -3.334 1.00 24.17 ATOM 144 C GLY A 72 28.634 -10.071 -1.936 1.00 27.96 ATOM 145 O GLY A 72 29.047 -9.036 -1.399 1.00 40.41 ATOM 146 N THR A 73 28.735 -11.265 -1.349 1.00 23.32 ATOM 147 CA THR A 73 29.393 -11.388 -0.046 1.00 39.09 ATOM 148 C THR A 73 30.847 -10.907 -0.112 1.00 23.44 ATOM 149 O THR A 73 31.330 -10.222 0.796 1.00 27.45 ATOM 150 CB THR A 73 29.442 -12.841 0.409 1.00 32.60 ATOM 151 OG1 THR A 73 28.163 -13.436 0.345 1.00 38.38 ATOM 152 CG2 THR A 73 29.977 -12.916 1.808 1.00 35.01 ATOM 153 N MET A 74 31.547 -11.242 -1.195 1.00 23.79 ATOM 154 CA MET A 74 32.957 -10.853 -1.322 1.00 24.38 ATOM 155 C MET A 74 33.099 -9.349 -1.415 1.00 25.04 ATOM 156 O MET A 74 33.906 -8.742 -0.696 1.00 30.06 ATOM 157 CB MET A 74 33.578 -11.506 -2.559 1.00 24.51 ATOM 158 CG MET A 74 35.080 -11.202 -2.685 1.00 37.04 ATOM 159 SD MET A 74 35.741 -11.672 -4.271 1.00 43.03 ATOM 160 CE MET A 74 34.980 -10.376 -5.255 1.00 42.08 ATOM 161 N LYS A 75 32.280 -8.733 -2.271 1.00 34.66 ATOM 162 CA LYS A 75 32.245 -7.280 -2.432 1.00 38.86 ATOM 163 C LYS A 75 32.005 -6.580 -1.098 1.00 37.01 ATOM 164 O LYS A 75 32.716 -5.630 -0.728 1.00 40.32 ATOM 165 CB LYS A 75 31.156 -6.938 -3.462 1.00 36.25 ATOM 166 CG LYS A 75 30.471 -5.588 -3.311 1.00 50.89 ATOM 167 CD LYS A 75 29.913 -5.142 -4.660 1.00 62.24 ATOM 168 CE LYS A 75 29.278 -3.757 -4.610 1.00 65.47 ATOM 169 NZ LYS A 75 28.425 -3.482 -5.817 1.00 66.08 ATOM 170 N MET A 76 31.058 -7.100 -0.320 1.00 44.14 ATOM 171 CA MET A 76 30.735 -6.475 0.958 1.00 42.22 ATOM 172 C MET A 76 31.877 -6.623 1.957 1.00 30.42 ATOM 173 O MET A 76 32.121 -5.732 2.786 1.00 24.82 ATOM 174 CB MET A 76 29.494 -7.145 1.527 1.00 25.63 ATOM 175 CG MET A 76 28.994 -6.533 2.799 1.00 46.96 ATOM 176 SD MET A 76 28.153 -5.025 2.320 1.00 68.60 ATOM 177 CE MET A 76 28.645 -3.886 3.569 1.00 63.09 ATOM 178 N HIS A 77 32.489 -7.797 1.980 1.00 27.88 ATOM 179 CA HIS A 77 33.658 -7.994 2.823 1.00 30.80 ATOM 180 C HIS A 77 34.769 -7.007 2.461 1.00 24.67 ATOM 181 O HIS A 77 35.307 -6.347 3.349 1.00 24.74 ATOM 182 CB HIS A 77 34.140 -9.426 2.699 1.00 26.13 ATOM 183 CG HIS A 77 35.541 -9.628 3.174 1.00 47.38 ATOM 184 ND1 HIS A 77 36.641 -9.439 2.363 1.00 41.96 ATOM 185 CD2 HIS A 77 36.026 -10.001 4.384 1.00 43.46 ATOM 186 CE1 HIS A 77 37.733 -9.740 3.031 1.00 37.36 ATOM 187 NE2 HIS A 77 37.396 -10.044 4.269 1.00 39.63 ATOM 188 N ILE A 78 35.029 -6.805 1.160 1.00 29.67 ATOM 189 CA ILE A 78 36.034 -5.822 0.725 1.00 40.68 ATOM 190 C ILE A 78 35.671 -4.439 1.239 1.00 44.55 ATOM 191 O ILE A 78 36.519 -3.702 1.760 1.00 46.65 ATOM 192 CB ILE A 78 36.143 -5.811 -0.814 1.00 26.31 ATOM 193 CG1 ILE A 78 36.838 -7.070 -1.333 1.00 49.55 ATOM 194 CG2 ILE A 78 36.913 -4.611 -1.306 1.00 27.03 ATOM 195 CD1 ILE A 78 36.766 -7.210 -2.842 1.00 45.63 ATOM 196 N LEU A 79 34.384 -4.103 1.161 1.00 36.43 ATOM 197 CA LEU A 79 33.890 -2.799 1.606 1.00 45.99 ATOM 198 C LEU A 79 34.092 -2.578 3.101 1.00 38.03 ATOM 199 O LEU A 79 34.463 -1.477 3.531 1.00 27.98 ATOM 200 CB LEU A 79 32.422 -2.676 1.225 1.00 40.44 ATOM 201 CG LEU A 79 31.907 -1.612 0.271 1.00 48.62 ATOM 202 CD1 LEU A 79 30.400 -1.602 0.315 1.00 60.33 ATOM 203 CD2 LEU A 79 32.390 -0.290 0.640 1.00 45.09 ATOM 204 N GLN A 80 33.791 -3.591 3.919 1.00 32.82 ATOM 205 CA GLN A 80 33.863 -3.413 5.372 1.00 34.35 ATOM 206 C GLN A 80 35.274 -3.566 5.913 1.00 38.21 ATOM 207 O GLN A 80 35.577 -3.017 6.977 1.00 53.86 ATOM 208 CB GLN A 80 32.937 -4.396 6.094 1.00 39.78 ATOM 209 CG GLN A 80 31.447 -4.165 5.789 1.00 39.38 ATOM 210 CD GLN A 80 30.981 -2.780 6.249 1.00 46.16 ATOM 211 OE1 GLN A 80 31.273 -2.350 7.382 1.00 43.46 ATOM 212 NE2 GLN A 80 30.295 -2.055 5.360 1.00 38.33 ATOM 213 N LYS A 81 36.139 -4.270 5.199 1.00 29.70 ATOM 214 CA LYS A 81 37.443 -4.682 5.698 1.00 47.38 ATOM 215 C LYS A 81 38.608 -3.912 5.101 1.00 46.97 ATOM 216 O LYS A 81 39.541 -3.583 5.823 1.00 58.93 ATOM 217 CB LYS A 81 37.646 -6.175 5.420 1.00 44.19 ATOM 218 CG LYS A 81 37.580 -7.006 6.654 1.00 51.34 ATOM 219 CD LYS A 81 36.265 -6.841 7.329 1.00 54.46 ATOM 220 CE LYS A 81 36.448 -7.061 8.770 1.00 53.37 ATOM 221 NZ LYS A 81 35.496 -6.317 9.529 1.00 58.38 ATOM 222 N HIS A 82 38.544 -3.569 3.815 1.00 45.09 ATOM 223 CA HIS A 82 39.651 -2.984 3.074 1.00 37.67 ATOM 224 C HIS A 82 39.311 -1.601 2.525 1.00 45.32 ATOM 225 O HIS A 82 39.871 -1.169 1.509 1.00 43.59 ATOM 226 CB HIS A 82 40.053 -3.898 1.926 1.00 47.43 ATOM 227 CG HIS A 82 40.254 -5.318 2.327 1.00 52.92 ATOM 228 ND1 HIS A 82 40.911 -5.665 3.480 1.00 46.27 ATOM 229 CD2 HIS A 82 39.962 -6.480 1.693 1.00 56.88 ATOM 230 CE1 HIS A 82 40.973 -6.980 3.568 1.00 45.42 ATOM 231 NE2 HIS A 82 40.394 -7.500 2.501 1.00 46.47 ATOM 232 N THR A 83 38.386 -0.900 3.178 1.00 49.39 ATOM 233 CA THR A 83 37.897 0.383 2.686 1.00 57.21 ATOM 234 C THR A 83 37.535 1.254 3.879 1.00 57.69 ATOM 235 O THR A 83 36.953 0.767 4.850 1.00 57.41 ATOM 236 CB THR A 83 36.688 0.223 1.762 1.00 39.99 ATOM 237 OG1 THR A 83 36.956 -0.801 0.808 1.00 32.15 ATOM 238 CG2 THR A 83 36.398 1.540 1.025 1.00 45.23 ATOM 239 N GLU A 84 37.914 2.526 3.825 1.00 35.89 ATOM 240 CA GLU A 84 37.559 3.457 4.881 1.00 58.34 ATOM 241 C GLU A 84 36.685 4.587 4.351 1.00 53.69 ATOM 242 O GLU A 84 36.521 4.755 3.143 1.00 71.74 ATOM 243 CB GLU A 84 38.823 3.981 5.561 1.00 71.51 ATOM 244 CG GLU A 84 39.863 4.506 4.609 1.00 74.11 ATOM 245 CD GLU A 84 41.106 4.988 5.332 1.00 69.66 ATOM 246 OE1 GLU A 84 41.561 6.116 5.039 1.00 68.86 ATOM 247 OE2 GLU A 84 41.603 4.248 6.211 1.00 56.27 ATOM 248 N ASN A 85 36.084 5.325 5.290 1.00 53.50 ATOM 249 CA ASN A 85 35.184 6.450 5.014 1.00 53.51 ATOM 250 C ASN A 85 33.868 5.994 4.384 1.00 38.61 ATOM 251 O ASN A 85 33.236 6.737 3.635 1.00 48.17 ATOM 252 CB ASN A 85 35.852 7.511 4.136 1.00 48.16 ATOM 253 CG ASN A 85 35.334 8.900 4.414 1.00 54.87 ATOM 254 OD1 ASN A 85 34.931 9.218 5.532 1.00 80.64 ATOM 255 ND2 ASN A 85 35.340 9.740 3.390 1.00 45.82 ATOM 256 N VAL A 86 33.469 4.767 4.662 1.00 20.10 ATOM 257 CA VAL A 86 32.249 4.212 4.078 1.00 35.48 ATOM 258 C VAL A 86 31.037 4.699 4.853 1.00 24.22 ATOM 259 O VAL A 86 31.051 4.738 6.075 1.00 23.65 ATOM 260 CB VAL A 86 32.297 2.678 4.060 1.00 43.77 ATOM 261 CG1 VAL A 86 31.104 2.135 3.271 1.00 32.27 ATOM 262 CG2 VAL A 86 33.622 2.230 3.427 1.00 34.40 ATOM 263 ZN ZN A 39.882 -9.503 2.064 1.00 42.96 TER