HEADER DNA BINDING PROTEIN 31-DEC-69 6A59 TITLE Structure of histone demethylase REF6 at 1.8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 FRAGMENT: Ig gamma-1 chain C ; COMPND 6 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.82 ANGSTORMS DBREF 6A59 A 1223 1360 UNP Q9STM3 REF6_ARATH 1223 1360 SEQRES 1 A 30 ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN THR SEQRES 2 A 30 PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG LYS SEQRES 3 A 30 THR GLY HIS SER ATOM 1 N ARG A 104 27.767 -10.184 40.771 1.00 27.48 ATOM 2 CA ARG A 104 26.478 -9.606 41.144 1.00 28.42 ATOM 3 C ARG A 104 26.727 -8.634 42.302 1.00 29.20 ATOM 4 O ARG A 104 26.525 -8.985 43.465 1.00 28.82 ATOM 5 CB ARG A 104 25.485 -10.712 41.498 1.00 29.47 ATOM 6 CG ARG A 104 25.234 -11.647 40.321 1.00 30.14 ATOM 7 CD ARG A 104 24.082 -12.592 40.564 1.00 30.84 ATOM 8 NE ARG A 104 22.772 -11.949 40.462 1.00 30.15 ATOM 9 CZ ARG A 104 22.083 -11.739 39.337 1.00 30.41 ATOM 10 NH1 ARG A 104 20.887 -11.161 39.409 1.00 29.96 ATOM 11 NH2 ARG A 104 22.558 -12.097 38.142 1.00 30.82 ATOM 12 N PRO A 105 27.197 -7.409 41.982 1.00 29.16 ATOM 13 CA PRO A 105 27.680 -6.491 43.025 1.00 29.41 ATOM 14 C PRO A 105 26.631 -5.943 43.996 1.00 29.56 ATOM 15 O PRO A 105 26.998 -5.528 45.094 1.00 31.48 ATOM 16 CB PRO A 105 28.288 -5.328 42.224 1.00 30.13 ATOM 17 CG PRO A 105 28.446 -5.827 40.832 1.00 29.97 ATOM 18 CD PRO A 105 27.338 -6.810 40.641 1.00 29.85 ATOM 19 N TYR A 106 25.360 -5.933 43.598 1.00 29.89 ATOM 20 CA TYR A 106 24.301 -5.274 44.373 1.00 31.52 ATOM 21 C TYR A 106 23.490 -6.311 45.137 1.00 33.58 ATOM 22 O TYR A 106 22.857 -7.175 44.534 1.00 33.01 ATOM 23 CB TYR A 106 23.419 -4.438 43.445 1.00 30.52 ATOM 24 CG TYR A 106 24.245 -3.587 42.509 1.00 30.09 ATOM 25 CD1 TYR A 106 24.876 -2.432 42.965 1.00 30.59 ATOM 26 CD2 TYR A 106 24.442 -3.963 41.179 1.00 29.37 ATOM 27 CE1 TYR A 106 25.659 -1.661 42.119 1.00 29.74 ATOM 28 CE2 TYR A 106 25.223 -3.201 40.325 1.00 29.18 ATOM 29 CZ TYR A 106 25.831 -2.049 40.800 1.00 30.00 ATOM 30 OH TYR A 106 26.607 -1.285 39.961 1.00 29.45 ATOM 31 N VAL A 107 23.542 -6.225 46.467 1.00 35.27 ATOM 32 CA VAL A 107 22.882 -7.175 47.360 1.00 37.10 ATOM 33 C VAL A 107 21.849 -6.416 48.190 1.00 39.43 ATOM 34 O VAL A 107 22.152 -5.359 48.750 1.00 38.63 ATOM 35 CB VAL A 107 23.895 -7.858 48.308 1.00 37.86 ATOM 36 CG1 VAL A 107 23.225 -8.980 49.099 1.00 38.18 ATOM 37 CG2 VAL A 107 25.094 -8.392 47.529 1.00 37.91 ATOM 38 N CYS A 108 20.637 -6.964 48.271 1.00 41.61 ATOM 39 CA CYS A 108 19.559 -6.353 49.050 1.00 44.04 ATOM 40 C CYS A 108 19.868 -6.413 50.545 1.00 46.20 ATOM 41 O CYS A 108 20.376 -7.422 51.037 1.00 45.40 ATOM 42 CB CYS A 108 18.227 -7.044 48.766 1.00 43.54 ATOM 43 SG CYS A 108 16.814 -6.207 49.519 1.00 47.54 ATOM 44 N ALA A 109 19.551 -5.327 51.251 1.00 49.46 ATOM 45 CA ALA A 109 19.899 -5.164 52.669 1.00 52.09 ATOM 46 C ALA A 109 18.831 -5.660 53.657 1.00 55.20 ATOM 47 O ALA A 109 19.069 -5.641 54.867 1.00 57.52 ATOM 48 CB ALA A 109 20.227 -3.704 52.951 1.00 52.71 ATOM 49 N GLU A 110 17.673 -6.104 53.159 1.00 56.45 ATOM 50 CA GLU A 110 16.588 -6.574 54.029 1.00 56.77 ATOM 51 C GLU A 110 16.939 -7.918 54.677 1.00 58.90 ATOM 52 O GLU A 110 17.686 -8.704 54.088 1.00 60.31 ATOM 53 CB GLU A 110 15.278 -6.699 53.252 1.00 55.58 ATOM 54 N PRO A 111 16.388 -8.195 55.882 1.00 61.00 ATOM 55 CA PRO A 111 16.841 -9.361 56.657 1.00 60.32 ATOM 56 C PRO A 111 16.547 -10.716 56.007 1.00 60.96 ATOM 57 O PRO A 111 17.426 -11.581 55.980 1.00 63.96 ATOM 58 CB PRO A 111 16.076 -9.232 57.990 1.00 60.84 ATOM 59 CG PRO A 111 15.418 -7.894 57.970 1.00 60.60 ATOM 60 CD PRO A 111 15.236 -7.540 56.529 1.00 60.50 ATOM 61 N ASP A 112 15.330 -10.884 55.488 1.00 58.86 ATOM 62 CA ASP A 112 14.873 -12.169 54.949 1.00 59.80 ATOM 63 C ASP A 112 14.662 -12.126 53.428 1.00 59.07 ATOM 64 O ASP A 112 13.690 -12.694 52.915 1.00 60.93 ATOM 65 CB ASP A 112 13.581 -12.591 55.662 1.00 62.12 ATOM 66 CG ASP A 112 13.698 -12.523 57.179 1.00 65.34 ATOM 67 OD1 ASP A 112 14.720 -12.997 57.724 1.00 70.26 ATOM 68 OD2 ASP A 112 12.768 -11.995 57.824 1.00 69.34 ATOM 69 N CYS A 113 15.577 -11.465 52.713 1.00 54.54 ATOM 70 CA CYS A 113 15.531 -11.392 51.247 1.00 50.70 ATOM 71 C CYS A 113 16.795 -12.005 50.641 1.00 47.62 ATOM 72 O CYS A 113 16.725 -13.061 50.006 1.00 45.95 ATOM 73 CB CYS A 113 15.337 -9.947 50.774 1.00 50.06 ATOM 74 SG CYS A 113 15.340 -9.756 48.974 1.00 49.86 ATOM 75 N GLY A 114 17.937 -11.347 50.848 1.00 44.83 ATOM 76 CA GLY A 114 19.231 -11.812 50.341 1.00 42.21 ATOM 77 C GLY A 114 19.389 -11.874 48.827 1.00 40.05 ATOM 78 O GLY A 114 20.284 -12.557 48.330 1.00 37.15 ATOM 79 N GLN A 115 18.550 -11.142 48.096 1.00 38.71 ATOM 80 CA GLN A 115 18.541 -11.197 46.634 1.00 37.98 ATOM 81 C GLN A 115 19.689 -10.351 46.067 1.00 35.75 ATOM 82 O GLN A 115 19.976 -9.274 46.591 1.00 34.73 ATOM 83 CB GLN A 115 17.190 -10.714 46.106 1.00 39.53 ATOM 84 CG GLN A 115 16.870 -11.175 44.697 1.00 40.86 ATOM 85 CD GLN A 115 15.441 -10.877 44.279 1.00 40.52 ATOM 86 OE1 GLN A 115 14.517 -10.914 45.093 1.00 44.61 ATOM 87 NE2 GLN A 115 15.250 -10.595 42.998 1.00 40.96 ATOM 88 N THR A 116 20.343 -10.852 45.014 1.00 33.98 ATOM 89 CA THR A 116 21.481 -10.165 44.378 1.00 31.58 ATOM 90 C THR A 116 21.148 -9.742 42.955 1.00 31.32 ATOM 91 O THR A 116 20.292 -10.348 42.300 1.00 28.98 ATOM 92 CB THR A 116 22.743 -11.046 44.318 1.00 31.61 ATOM 93 OG1 THR A 116 22.521 -12.153 43.433 1.00 30.15 ATOM 94 CG2 THR A 116 23.116 -11.553 45.704 1.00 32.21 ATOM 95 N PHE A 117 21.847 -8.712 42.477 1.00 30.22 ATOM 96 CA PHE A 117 21.590 -8.129 41.160 1.00 30.50 ATOM 97 C PHE A 117 22.879 -7.836 40.407 1.00 29.16 ATOM 98 O PHE A 117 23.897 -7.481 41.002 1.00 26.06 ATOM 99 CB PHE A 117 20.744 -6.863 41.297 1.00 31.77 ATOM 100 CG PHE A 117 19.494 -7.076 42.088 1.00 32.46 ATOM 101 CD1 PHE A 117 18.329 -7.500 41.462 1.00 33.17 ATOM 102 CD2 PHE A 117 19.494 -6.910 43.469 1.00 32.88 ATOM 103 CE1 PHE A 117 17.175 -7.725 42.196 1.00 34.23 ATOM 104 CE2 PHE A 117 18.345 -7.137 44.208 1.00 33.74 ATOM 105 CZ PHE A 117 17.184 -7.542 43.570 1.00 34.28 ATOM 106 N ARG A 118 22.802 -7.992 39.090 1.00 30.14 ATOM 107 CA ARG A 118 23.928 -7.815 38.181 1.00 32.97 ATOM 108 C ARG A 118 24.093 -6.348 37.773 1.00 33.38 ATOM 109 O ARG A 118 25.221 -5.864 37.640 1.00 30.47 ATOM 110 CB ARG A 118 23.686 -8.682 36.945 1.00 35.99 ATOM 111 CG ARG A 118 24.838 -8.774 35.962 1.00 38.48 ATOM 112 CD ARG A 118 24.671 -9.982 35.045 1.00 41.05 ATOM 113 NE ARG A 118 23.364 -10.057 34.386 1.00 44.17 ATOM 114 CZ ARG A 118 22.880 -11.132 33.753 1.00 44.40 ATOM 115 NH1 ARG A 118 23.581 -12.265 33.670 1.00 45.40 ATOM 116 NH2 ARG A 118 21.674 -11.073 33.191 1.00 47.20 ATOM 117 N PHE A 119 22.967 -5.660 37.567 1.00 34.34 ATOM 118 CA PHE A 119 22.941 -4.250 37.154 1.00 36.32 ATOM 119 C PHE A 119 22.247 -3.399 38.216 1.00 37.14 ATOM 120 O PHE A 119 21.298 -3.856 38.858 1.00 36.42 ATOM 121 CB PHE A 119 22.199 -4.090 35.821 1.00 37.97 ATOM 122 CG PHE A 119 22.577 -5.107 34.773 1.00 39.21 ATOM 123 CD1 PHE A 119 23.905 -5.284 34.394 1.00 40.08 ATOM 124 CD2 PHE A 119 21.599 -5.872 34.140 1.00 39.94 ATOM 125 CE1 PHE A 119 24.248 -6.211 33.415 1.00 39.78 ATOM 126 CE2 PHE A 119 21.938 -6.800 33.164 1.00 41.00 ATOM 127 CZ PHE A 119 23.266 -6.970 32.800 1.00 40.15 ATOM 128 N VAL A 120 22.708 -2.159 38.385 1.00 37.82 ATOM 129 CA VAL A 120 22.146 -1.253 39.397 1.00 39.06 ATOM 130 C VAL A 120 20.667 -0.909 39.144 1.00 39.32 ATOM 131 O VAL A 120 19.903 -0.745 40.098 1.00 38.19 ATOM 132 CB VAL A 120 22.996 0.040 39.563 1.00 39.57 ATOM 133 CG1 VAL A 120 22.832 0.989 38.378 1.00 40.00 ATOM 134 CG2 VAL A 120 22.655 0.744 40.871 1.00 40.60 ATOM 135 N SER A 121 20.276 -0.815 37.871 1.00 40.87 ATOM 136 CA SER A 121 18.880 -0.542 37.493 1.00 42.95 ATOM 137 C SER A 121 17.911 -1.642 37.946 1.00 44.40 ATOM 138 O SER A 121 16.775 -1.345 38.318 1.00 41.39 ATOM 139 CB SER A 121 18.759 -0.326 35.979 1.00 43.79 ATOM 140 OG SER A 121 19.294 -1.420 35.256 1.00 46.63 ATOM 141 N ASP A 122 18.365 -2.897 37.916 1.00 45.19 ATOM 142 CA ASP A 122 17.594 -4.026 38.459 1.00 46.05 ATOM 143 C ASP A 122 17.471 -3.945 39.984 1.00 45.47 ATOM 144 O ASP A 122 16.420 -4.268 40.544 1.00 46.79 ATOM 145 CB ASP A 122 18.232 -5.370 38.073 1.00 46.76 ATOM 146 CG ASP A 122 18.205 -5.639 36.572 1.00 48.30 ATOM 147 OD1 ASP A 122 17.420 -4.998 35.839 1.00 53.60 ATOM 148 OD2 ASP A 122 18.974 -6.516 36.126 1.00 51.69 ATOM 149 N PHE A 123 18.552 -3.527 40.644 1.00 43.87 ATOM 150 CA PHE A 123 18.564 -3.332 42.098 1.00 46.53 ATOM 151 C PHE A 123 17.653 -2.173 42.520 1.00 48.27 ATOM 152 O PHE A 123 16.942 -2.278 43.520 1.00 46.74 ATOM 153 CB PHE A 123 20.005 -3.114 42.591 1.00 46.37 ATOM 154 CG PHE A 123 20.126 -2.858 44.072 1.00 45.66 ATOM 155 CD1 PHE A 123 19.480 -3.673 44.999 1.00 46.62 ATOM 156 CD2 PHE A 123 20.917 -1.811 44.546 1.00 47.52 ATOM 157 CE1 PHE A 123 19.601 -3.438 46.360 1.00 47.96 ATOM 158 CE2 PHE A 123 21.045 -1.575 45.906 1.00 48.55 ATOM 159 CZ PHE A 123 20.386 -2.389 46.815 1.00 49.01 ATOM 160 N SER A 124 17.678 -1.084 41.753 1.00 50.68 ATOM 161 CA SER A 124 16.787 0.062 41.984 1.00 52.87 ATOM 162 C SER A 124 15.316 -0.295 41.751 1.00 54.67 ATOM 163 O SER A 124 14.446 0.121 42.518 1.00 56.09 ATOM 164 CB SER A 124 17.182 1.236 41.087 1.00 53.26 ATOM 165 OG SER A 124 18.515 1.640 41.342 1.00 54.68 ATOM 166 N ARG A 125 15.055 -1.067 40.695 1.00 56.69 ATOM 167 CA ARG A 125 13.707 -1.561 40.385 1.00 58.98 ATOM 168 C ARG A 125 13.123 -2.428 41.506 1.00 60.52 ATOM 169 O ARG A 125 11.923 -2.361 41.780 1.00 61.51 ATOM 170 CB ARG A 125 13.718 -2.353 39.072 1.00 60.56 ATOM 171 CG ARG A 125 12.338 -2.724 38.544 1.00 62.76 ATOM 172 CD ARG A 125 12.387 -3.150 37.083 1.00 64.95 ATOM 173 NE ARG A 125 12.774 -2.049 36.195 1.00 69.06 ATOM 174 CZ ARG A 125 12.869 -2.130 34.865 1.00 72.02 ATOM 175 NH1 ARG A 125 12.602 -3.267 34.222 1.00 74.05 ATOM 176 NH2 ARG A 125 13.235 -1.055 34.168 1.00 73.45 ATOM 177 N HIS A 126 13.972 -3.235 42.143 1.00 60.21 ATOM 178 CA HIS A 126 13.550 -4.079 43.266 1.00 60.90 ATOM 179 C HIS A 126 13.165 -3.262 44.504 1.00 62.56 ATOM 180 O HIS A 126 12.199 -3.598 45.190 1.00 63.50 ATOM 181 CB HIS A 126 14.643 -5.088 43.635 1.00 59.35 ATOM 182 CG HIS A 126 14.166 -6.184 44.535 1.00 57.46 ATOM 183 ND1 HIS A 126 13.436 -7.256 44.070 1.00 59.19 ATOM 184 CD2 HIS A 126 14.307 -6.374 45.868 1.00 57.64 ATOM 185 CE1 HIS A 126 13.146 -8.059 45.077 1.00 59.51 ATOM 186 NE2 HIS A 126 13.665 -7.548 46.178 1.00 58.30 ATOM 187 N LYS A 127 13.929 -2.206 44.786 1.00 63.81 ATOM 188 CA LYS A 127 13.643 -1.303 45.911 1.00 66.18 ATOM 189 C LYS A 127 12.349 -0.497 45.736 1.00 69.06 ATOM 190 O LYS A 127 11.701 -0.151 46.726 1.00 72.31 ATOM 191 CB LYS A 127 14.820 -0.349 46.155 1.00 65.78 ATOM 192 CG LYS A 127 16.059 -1.037 46.707 1.00 65.67 ATOM 193 CD LYS A 127 17.190 -0.056 46.981 1.00 66.03 ATOM 194 CE LYS A 127 17.861 0.412 45.699 1.00 66.19 ATOM 195 NZ LYS A 127 19.058 1.254 45.972 1.00 66.59 ATOM 196 N ARG A 128 11.984 -0.192 44.490 1.00 71.21 ATOM 197 CA ARG A 128 10.720 0.499 44.199 1.00 73.16 ATOM 198 C ARG A 128 9.525 -0.452 44.274 1.00 74.58 ATOM 199 O ARG A 128 8.536 -0.157 44.947 1.00 77.32 ATOM 200 CB ARG A 128 10.759 1.182 42.824 1.00 74.02 ATOM 201 CG ARG A 128 11.537 2.489 42.803 1.00 74.21 ATOM 202 CD ARG A 128 11.321 3.245 41.500 1.00 75.19 ATOM 203 NE ARG A 128 11.948 2.569 40.362 1.00 76.07 ATOM 204 CZ ARG A 128 13.237 2.654 40.019 1.00 75.70 ATOM 205 NH1 ARG A 128 14.100 3.395 40.719 1.00 76.63 ATOM 206 NH2 ARG A 128 13.675 1.983 38.955 1.00 75.42 ATOM 207 N LYS A 129 9.626 -1.585 43.581 1.00 74.68 ATOM 208 CA LYS A 129 8.516 -2.539 43.467 1.00 75.97 ATOM 209 C LYS A 129 8.181 -3.237 44.790 1.00 76.65 ATOM 210 O LYS A 129 7.010 -3.507 45.067 1.00 79.83 ATOM 211 CB LYS A 129 8.813 -3.573 42.375 1.00 76.34 ATOM 212 CG LYS A 129 7.636 -4.477 42.024 1.00 77.59 ATOM 213 CD LYS A 129 7.559 -4.785 40.532 1.00 78.53 ATOM 214 CE LYS A 129 8.776 -5.546 40.026 1.00 78.78 ATOM 215 NZ LYS A 129 8.636 -5.898 38.586 1.00 79.22 ATOM 216 N THR A 130 9.208 -3.529 45.588 1.00 76.39 ATOM 217 CA THR A 130 9.043 -4.063 46.942 1.00 76.89 ATOM 218 C THR A 130 9.742 -3.123 47.921 1.00 78.10 ATOM 219 O THR A 130 10.884 -2.729 47.687 1.00 81.68 ATOM 220 CB THR A 130 9.645 -5.477 47.069 1.00 76.57 ATOM 221 OG1 THR A 130 11.066 -5.421 46.882 1.00 74.31 ATOM 222 CG2 THR A 130 9.037 -6.419 46.037 1.00 77.16 ATOM 223 N GLY A 131 9.070 -2.780 49.019 1.00 78.28 ATOM 224 CA GLY A 131 9.614 -1.844 50.007 1.00 80.04 ATOM 225 C GLY A 131 10.747 -2.431 50.829 1.00 83.80 ATOM 226 O GLY A 131 10.550 -2.809 51.987 1.00 88.29 ATOM 227 N HIS A 132 11.932 -2.498 50.220 1.00 84.42 ATOM 228 CA HIS A 132 13.131 -3.084 50.830 1.00 83.22 ATOM 229 C HIS A 132 14.260 -2.054 50.902 1.00 82.56 ATOM 230 O HIS A 132 14.312 -1.119 50.098 1.00 81.45 ATOM 231 CB HIS A 132 13.590 -4.302 50.021 1.00 82.63 ATOM 232 CG HIS A 132 12.731 -5.514 50.206 1.00 83.76 ATOM 233 ND1 HIS A 132 13.234 -6.722 50.638 1.00 85.39 ATOM 234 CD2 HIS A 132 11.403 -5.705 50.026 1.00 85.00 ATOM 235 CE1 HIS A 132 12.255 -7.605 50.710 1.00 86.18 ATOM 236 NE2 HIS A 132 11.133 -7.013 50.344 1.00 85.96 ATOM 237 N SER A 133 15.162 -2.242 51.865 1.00 82.68 ATOM 238 CA SER A 133 16.309 -1.348 52.054 1.00 83.37 ATOM 239 C SER A 133 17.384 -1.606 51.000 1.00 84.19 ATOM 240 O SER A 133 17.680 -2.754 50.664 1.00 83.93 ATOM 241 CB SER A 133 16.904 -1.525 53.453 1.00 83.01 ATOM 242 OG SER A 133 15.931 -1.290 54.456 1.00 83.33 ATOM 243 ZN ZN A 15.103 -7.362 48.631 1.00 62.27 TER