HEADER BLOOD CLOTTING 31-DEC-69 6EO8 TITLE Crystal structure of thrombin in complex with a novel TITLE 2 glucose-conjugated potent inhibitor COMPND MOL_ID: 2; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: H; COMPND 4 EC: 3.4.21.5; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 1; COMPND 7 Prothrombin; COMPND 8 CHAIN: L; COMPND 9 EC: 3.4.21.5; COMPND 10 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 1.94 ANGSTORMS DBREF 6EO8 H 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 6EO8 L -5 18 UNP P00734 THRB_HUMAN 328 363 SEQRES 1 L 26 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 L 26 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR ATOM 1 N ALA L 7 13.223 55.752 15.217 1.00 58.09 ATOM 2 CA ALA L 7 13.743 57.164 15.346 1.00 56.81 ATOM 3 C ALA L 7 15.273 57.131 15.393 1.00 50.75 ATOM 4 O ALA L 7 15.986 57.521 14.474 1.00 41.51 ATOM 5 CB ALA L 7 13.187 57.824 16.611 1.00 58.29 ATOM 6 N ASP L 8 15.744 56.573 16.489 1.00 43.42 ATOM 7 CA ASP L 8 17.108 56.271 16.702 1.00 39.23 ATOM 8 C ASP L 8 17.405 54.744 16.402 1.00 35.55 ATOM 9 O ASP L 8 18.473 54.218 16.760 1.00 30.86 ATOM 10 CB ASP L 8 17.316 56.581 18.176 1.00 42.06 ATOM 11 CG ASP L 8 18.717 56.573 18.546 1.00 47.54 ATOM 12 OD1 ASP L 8 19.545 56.766 17.601 1.00 48.89 ATOM 13 OD2 ASP L 8 18.990 56.361 19.765 1.00 48.34 ATOM 14 N CYS L 9 16.448 54.031 15.790 1.00 28.79 ATOM 15 CA CYS L 9 16.549 52.553 15.634 1.00 24.73 ATOM 16 C CYS L 9 17.735 52.082 14.791 1.00 23.42 ATOM 17 O CYS L 9 18.247 52.830 13.910 1.00 21.68 ATOM 18 CB CYS L 9 15.235 51.988 15.084 1.00 24.21 ATOM 19 SG CYS L 9 14.961 52.381 13.353 1.00 21.06 ATOM 20 N GLY L 10 18.240 50.878 15.149 1.00 21.36 ATOM 21 CA GLY L 10 19.244 50.193 14.368 1.00 20.48 ATOM 22 C GLY L 10 20.636 50.764 14.374 1.00 20.44 ATOM 23 O GLY L 10 21.531 50.297 13.614 1.00 21.00 ATOM 24 N LEU L 11 20.875 51.704 15.283 1.00 20.59 ATOM 25 CA LEU L 11 22.201 52.283 15.429 1.00 22.54 ATOM 26 C LEU L 11 22.645 51.887 16.818 1.00 21.65 ATOM 27 O LEU L 11 22.040 52.265 17.831 1.00 20.96 ATOM 28 CB LEU L 11 22.200 53.796 15.160 1.00 23.53 ATOM 29 CG LEU L 11 21.798 54.285 13.728 1.00 22.23 ATOM 30 CD1 LEU L 11 21.657 55.803 13.807 1.00 27.49 ATOM 31 CD2 LEU L 11 22.788 53.933 12.599 1.00 23.86 ATOM 32 N ARG L 12 23.660 51.028 16.844 1.00 20.94 ATOM 33 CA ARG L 12 24.030 50.351 18.104 1.00 22.17 ATOM 34 C ARG L 12 24.953 51.272 18.949 1.00 23.80 ATOM 35 O ARG L 12 25.932 51.783 18.405 1.00 24.68 ATOM 36 CB ARG L 12 24.774 49.049 17.793 1.00 20.48 ATOM 37 CG ARG L 12 23.965 48.008 16.998 1.00 20.57 ATOM 38 CD ARG L 12 24.812 46.844 16.614 1.00 20.07 ATOM 39 NE ARG L 12 25.787 47.198 15.590 1.00 18.57 ATOM 40 CZ ARG L 12 26.654 46.363 15.041 1.00 20.11 ATOM 41 NH1 ARG L 12 26.759 45.087 15.461 1.00 19.53 ATOM 42 NH2 ARG L 12 27.473 46.824 14.092 1.00 20.67 ATOM 43 N PRO L 13 24.689 51.400 20.268 1.00 23.53 ATOM 44 CA PRO L 13 25.554 52.251 21.103 1.00 23.46 ATOM 45 C PRO L 13 27.041 51.971 21.020 1.00 24.66 ATOM 46 O PRO L 13 27.812 52.941 20.973 1.00 28.54 ATOM 47 CB PRO L 13 24.984 52.049 22.489 1.00 22.30 ATOM 48 CG PRO L 13 23.502 51.893 22.255 1.00 22.25 ATOM 49 CD PRO L 13 23.476 51.016 21.019 1.00 22.90 ATOM 50 N LEU L 14 27.453 50.704 20.916 1.00 22.24 ATOM 51 CA LEU L 14 28.875 50.369 20.843 1.00 23.39 ATOM 52 C LEU L 14 29.496 50.180 19.474 1.00 24.56 ATOM 53 O LEU L 14 30.711 49.871 19.370 1.00 21.31 ATOM 54 CB LEU L 14 29.200 49.136 21.715 1.00 24.78 ATOM 55 CG LEU L 14 28.781 49.189 23.205 1.00 26.43 ATOM 56 CD1 LEU L 14 29.205 47.856 23.898 1.00 23.94 ATOM 57 CD2 LEU L 14 29.323 50.424 23.966 1.00 26.98 ATOM 58 N PHE L 15 28.706 50.356 18.412 1.00 25.15 ATOM 59 CA PHE L 15 29.253 50.251 17.061 1.00 26.29 ATOM 60 C PHE L 15 28.922 51.551 16.289 1.00 29.72 ATOM 61 O PHE L 15 29.700 52.523 16.373 1.00 30.01 ATOM 62 CB PHE L 15 28.812 48.936 16.427 1.00 26.18 ATOM 63 CG PHE L 15 29.414 47.750 17.121 1.00 25.47 ATOM 64 CD1 PHE L 15 30.663 47.310 16.776 1.00 22.96 ATOM 65 CD2 PHE L 15 28.763 47.144 18.219 1.00 25.63 ATOM 66 CE1 PHE L 15 31.289 46.287 17.485 1.00 24.33 ATOM 67 CE2 PHE L 15 29.381 46.114 18.947 1.00 23.54 ATOM 68 CZ PHE L 15 30.630 45.679 18.570 1.00 24.49 ATOM 69 N GLU L 16 27.763 51.621 15.640 1.00 27.98 ATOM 70 CA GLU L 16 27.470 52.724 14.725 1.00 26.51 ATOM 71 C GLU L 16 27.468 54.054 15.510 1.00 30.00 ATOM 72 O GLU L 16 27.930 55.040 15.031 1.00 31.73 ATOM 73 CB GLU L 16 26.116 52.567 14.021 1.00 25.36 ATOM 74 CG GLU L 16 26.016 51.464 12.956 1.00 21.76 ATOM 75 CD GLU L 16 25.943 50.053 13.546 1.00 20.74 ATOM 76 OE1 GLU L 16 25.528 49.918 14.730 1.00 18.85 ATOM 77 OE2 GLU L 16 26.276 49.080 12.831 1.00 21.20 ATOM 78 N LYS L 17 26.950 54.082 16.730 1.00 32.39 ATOM 79 CA LYS L 17 26.919 55.329 17.466 1.00 31.19 ATOM 80 C LYS L 17 28.310 55.813 17.874 1.00 30.95 ATOM 81 O LYS L 17 28.431 56.957 18.243 1.00 33.04 ATOM 82 CB LYS L 17 25.960 55.275 18.657 1.00 28.50 ATOM 83 CG LYS L 17 24.521 55.178 18.225 1.00 31.19 ATOM 84 CD LYS L 17 23.617 54.928 19.416 1.00 36.88 ATOM 85 CE LYS L 17 22.978 56.184 19.968 1.00 39.49 ATOM 86 NZ LYS L 17 21.723 56.348 19.207 1.00 42.32 ATOM 87 N LYS L 18 29.326 54.963 17.770 1.00 32.46 ATOM 88 CA LYS L 18 30.745 55.323 17.997 1.00 35.75 ATOM 89 C LYS L 18 31.577 55.131 16.756 1.00 33.87 ATOM 90 O LYS L 18 32.821 55.158 16.770 1.00 36.33 ATOM 91 CB LYS L 18 31.319 54.446 19.116 1.00 40.67 ATOM 92 CG LYS L 18 30.704 54.762 20.471 1.00 41.93 ATOM 93 CD LYS L 18 31.011 53.722 21.529 1.00 46.55 ATOM 94 CE LYS L 18 32.476 53.346 21.567 1.00 46.26 ATOM 95 NZ LYS L 18 32.857 52.996 22.956 1.00 46.70 ATOM 96 N SER L 19 30.880 54.962 15.651 1.00 35.78 ATOM 97 CA SER L 19 31.506 54.648 14.391 1.00 34.73 ATOM 98 C SER L 19 32.565 53.564 14.523 1.00 34.27 ATOM 99 O SER L 19 33.637 53.708 14.007 1.00 35.81 ATOM 100 CB SER L 19 32.049 55.947 13.762 1.00 38.30 ATOM 101 OG SER L 19 32.678 55.674 12.550 1.00 36.93 ATOM 102 N LEU L 20 32.241 52.452 15.202 1.00 34.89 ATOM 103 CA LEU L 20 33.106 51.264 15.217 1.00 31.28 ATOM 104 C LEU L 20 32.442 50.130 14.417 1.00 33.01 ATOM 105 O LEU L 20 31.228 50.004 14.436 1.00 29.66 ATOM 106 CB LEU L 20 33.334 50.803 16.675 1.00 33.38 ATOM 107 CG LEU L 20 34.187 51.715 17.594 1.00 35.56 ATOM 108 CD1 LEU L 20 34.402 51.096 18.974 1.00 33.98 ATOM 109 CD2 LEU L 20 35.529 51.981 16.902 1.00 35.38 ATOM 110 N GLU L 21 33.239 49.318 13.737 1.00 31.19 ATOM 111 CA GLU L 21 32.722 48.220 12.972 1.00 33.22 ATOM 112 C GLU L 21 32.753 46.984 13.785 1.00 31.21 ATOM 113 O GLU L 21 33.643 46.853 14.607 1.00 30.29 ATOM 114 CB GLU L 21 33.526 47.992 11.720 1.00 34.29 ATOM 115 CG GLU L 21 33.240 49.021 10.630 1.00 43.46 ATOM 116 CD GLU L 21 33.521 48.496 9.207 1.00 49.00 ATOM 117 OE1 GLU L 21 34.185 47.420 9.041 1.00 49.02 ATOM 118 OE2 GLU L 21 33.024 49.146 8.255 1.00 49.17 ATOM 119 N ASP L 22 31.819 46.052 13.563 1.00 27.58 ATOM 120 CA ASP L 22 31.922 44.744 14.248 1.00 27.64 ATOM 121 C ASP L 22 32.746 43.834 13.382 1.00 25.69 ATOM 122 O ASP L 22 33.060 44.169 12.249 1.00 27.40 ATOM 123 CB ASP L 22 30.566 44.159 14.756 1.00 25.04 ATOM 124 CG ASP L 22 29.664 43.582 13.658 1.00 22.94 ATOM 125 OD1 ASP L 22 30.087 42.749 12.834 1.00 23.59 ATOM 126 OD2 ASP L 22 28.481 43.916 13.699 1.00 19.98 ATOM 127 N LYS L 23 33.092 42.675 13.900 1.00 30.11 ATOM 128 CA LYS L 23 34.076 41.844 13.211 1.00 34.52 ATOM 129 C LYS L 23 33.614 41.180 11.939 1.00 34.30 ATOM 130 O LYS L 23 34.443 40.747 11.188 1.00 35.30 ATOM 131 CB LYS L 23 34.657 40.788 14.151 1.00 39.37 ATOM 132 CG LYS L 23 35.461 41.389 15.294 1.00 45.79 ATOM 133 CD LYS L 23 36.901 41.731 14.933 1.00 54.09 ATOM 134 CE LYS L 23 37.686 42.200 16.166 1.00 61.51 ATOM 135 NZ LYS L 23 37.402 41.380 17.402 1.00 64.05 ATOM 136 N THR L 24 32.308 41.068 11.694 1.00 34.20 ATOM 137 CA THR L 24 31.829 40.395 10.485 1.00 29.22 ATOM 138 C THR L 24 30.799 41.191 9.686 1.00 29.85 ATOM 139 O THR L 24 30.280 40.641 8.725 1.00 32.14 ATOM 140 CB THR L 24 31.268 38.966 10.765 1.00 28.27 ATOM 141 OG1 THR L 24 30.109 39.022 11.625 1.00 26.86 ATOM 142 CG2 THR L 24 32.308 38.088 11.351 1.00 27.91 ATOM 143 N GLU L 25 30.488 42.454 10.050 1.00 30.33 ATOM 144 CA GLU L 25 29.483 43.211 9.297 1.00 29.20 ATOM 145 C GLU L 25 29.916 43.433 7.860 1.00 32.95 ATOM 146 O GLU L 25 29.059 43.465 6.958 1.00 29.43 ATOM 147 CB GLU L 25 29.072 44.513 9.938 1.00 29.30 ATOM 148 CG GLU L 25 30.183 45.555 10.122 1.00 28.27 ATOM 149 CD GLU L 25 29.628 46.819 10.691 1.00 27.83 ATOM 150 OE1 GLU L 25 29.665 46.979 11.948 1.00 30.45 ATOM 151 OE2 GLU L 25 29.086 47.650 9.886 1.00 28.85 ATOM 152 N ARG L 26 31.219 43.584 7.637 1.00 35.50 ATOM 153 CA ARG L 26 31.707 43.686 6.270 1.00 40.36 ATOM 154 C ARG L 26 31.324 42.521 5.346 1.00 35.66 ATOM 155 O ARG L 26 31.115 42.785 4.183 1.00 37.52 ATOM 156 CB ARG L 26 33.217 43.934 6.216 1.00 48.99 ATOM 157 CG ARG L 26 33.631 44.720 4.964 1.00 54.80 ATOM 158 CD ARG L 26 34.864 45.578 5.207 1.00 62.98 ATOM 159 NE ARG L 26 34.583 46.909 5.794 1.00 74.69 ATOM 160 CZ ARG L 26 34.239 48.020 5.118 1.00 73.67 ATOM 161 NH1 ARG L 26 34.055 49.159 5.782 1.00 66.86 ATOM 162 NH2 ARG L 26 34.064 48.013 3.790 1.00 69.02 ATOM 163 N GLU L 27 31.193 41.276 5.848 1.00 31.23 ATOM 164 CA GLU L 27 30.715 40.126 5.052 1.00 30.58 ATOM 165 C GLU L 27 29.284 40.310 4.479 1.00 32.58 ATOM 166 O GLU L 27 28.988 39.976 3.304 1.00 31.83 ATOM 167 CB GLU L 27 30.723 38.867 5.895 1.00 33.44 ATOM 168 CG GLU L 27 30.130 37.640 5.201 1.00 30.79 ATOM 169 CD GLU L 27 30.081 36.439 6.121 1.00 33.06 ATOM 170 OE1 GLU L 27 30.302 36.557 7.348 1.00 31.92 ATOM 171 OE2 GLU L 27 29.756 35.363 5.617 1.00 31.22 ATOM 172 N LEU L 28 28.420 40.902 5.302 1.00 30.29 ATOM 173 CA LEU L 28 27.114 41.370 4.856 1.00 30.92 ATOM 174 C LEU L 28 27.159 42.426 3.743 1.00 31.28 ATOM 175 O LEU L 28 26.569 42.254 2.688 1.00 28.54 ATOM 176 CB LEU L 28 26.331 41.945 6.050 1.00 32.79 ATOM 177 CG LEU L 28 25.552 40.928 6.908 1.00 32.52 ATOM 178 CD1 LEU L 28 26.237 39.614 7.144 1.00 32.10 ATOM 179 CD2 LEU L 28 25.152 41.573 8.208 1.00 32.70 ATOM 180 N LEU L 29 27.813 43.546 4.016 1.00 35.58 ATOM 181 CA LEU L 29 27.876 44.683 3.060 1.00 35.64 ATOM 182 C LEU L 29 28.474 44.230 1.735 1.00 30.47 ATOM 183 O LEU L 29 27.940 44.569 0.704 1.00 31.18 ATOM 184 CB LEU L 29 28.627 45.898 3.651 1.00 36.21 ATOM 185 CG LEU L 29 27.942 46.477 4.944 1.00 41.28 ATOM 186 CD1 LEU L 29 28.922 47.353 5.761 1.00 45.01 ATOM 187 CD2 LEU L 29 26.567 47.171 4.719 1.00 34.84 ATOM 188 N GLU L 30 29.490 43.396 1.771 1.00 32.67 ATOM 189 CA GLU L 30 30.105 42.894 0.537 1.00 39.06 ATOM 190 C GLU L 30 29.140 42.007 -0.277 1.00 38.12 ATOM 191 O GLU L 30 29.210 41.988 -1.496 1.00 32.01 ATOM 192 CB GLU L 30 31.437 42.163 0.800 1.00 46.08 ATOM 193 CG GLU L 30 31.289 40.717 1.275 1.00 55.60 ATOM 194 CD GLU L 30 32.608 39.932 1.397 1.00 59.86 ATOM 195 OE1 GLU L 30 33.644 40.509 1.805 1.00 57.48 ATOM 196 OE2 GLU L 30 32.579 38.711 1.109 1.00 60.79 ATOM 197 N SER L 31 28.229 41.295 0.395 1.00 35.29 ATOM 198 CA SER L 31 27.254 40.510 -0.309 1.00 33.25 ATOM 199 C SER L 31 26.254 41.378 -1.076 1.00 35.10 ATOM 200 O SER L 31 25.584 40.824 -1.944 1.00 37.78 ATOM 201 CB SER L 31 26.525 39.514 0.632 1.00 31.07 ATOM 202 OG SER L 31 25.583 40.154 1.462 1.00 29.56 ATOM 203 N TYR L 32 26.121 42.692 -0.787 1.00 34.94 ATOM 204 CA TYR L 32 25.166 43.566 -1.511 1.00 36.22 ATOM 205 C TYR L 32 25.863 44.222 -2.697 1.00 35.43 ATOM 206 O TYR L 32 26.066 43.572 -3.727 1.00 36.81 ATOM 207 CB TYR L 32 24.501 44.654 -0.594 1.00 40.19 ATOM 208 CG TYR L 32 24.048 44.210 0.804 1.00 41.35 ATOM 209 CD1 TYR L 32 23.577 42.918 1.052 1.00 37.45 ATOM 210 CD2 TYR L 32 24.079 45.089 1.881 1.00 38.23 ATOM 211 CE1 TYR L 32 23.180 42.518 2.343 1.00 39.08 ATOM 212 CE2 TYR L 32 23.671 44.687 3.160 1.00 35.72 ATOM 213 CZ TYR L 32 23.222 43.413 3.421 1.00 35.67 ATOM 214 OH TYR L 32 22.877 42.984 4.776 1.00 33.04 ATOM 215 S DMS L 30.061 34.165 10.730 1.00 48.01 ATOM 216 O DMS L 28.929 33.611 9.930 1.00 41.71 ATOM 217 C1 DMS L 29.562 35.125 12.076 1.00 50.16 ATOM 218 C2 DMS L 30.947 32.915 11.517 1.00 51.33 TER