HEADER HYDROLASE 31-DEC-69 6GWE TITLE Crystal structure of Thrombin bound to P2 macrocycle COMPND MOL_ID: 4; COMPND 2 MOLECULE: Prothrombin; COMPND 3 CHAIN: B; COMPND 4 EC: 3.4.21.5; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.30 ANGSTORMS DBREF 6GWE B 1 14 UNP P00734 THRB_HUMAN 334 363 SEQRES 1 B 30 ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SER SEQRES 2 B 30 LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER TYR SEQRES 3 B 30 ILE ASP GLY ARG ATOM 1 N ALA B 1 12.684 31.276 6.404 1.00 89.04 ATOM 2 CA ALA B 1 12.966 30.007 7.071 1.00 94.48 ATOM 3 C ALA B 1 14.220 29.363 6.481 1.00 89.63 ATOM 4 O ALA B 1 14.550 28.209 6.778 1.00 62.29 ATOM 5 CB ALA B 1 11.772 29.065 6.956 1.00 81.97 ATOM 6 N ASP B 2 14.907 30.127 5.631 1.00 87.12 ATOM 7 CA ASP B 2 16.125 29.679 4.968 1.00 65.32 ATOM 8 C ASP B 2 17.339 30.493 5.394 1.00 63.03 ATOM 9 O ASP B 2 18.421 30.332 4.813 1.00 58.14 ATOM 10 CB ASP B 2 15.960 29.752 3.446 1.00 63.44 ATOM 11 CG ASP B 2 16.798 28.715 2.723 1.00 71.19 ATOM 12 OD1 ASP B 2 17.031 27.636 3.312 1.00 63.84 ATOM 13 OD2 ASP B 2 17.222 28.975 1.574 1.00 67.88 ATOM 14 N CYS B 3 17.184 31.366 6.385 1.00 59.80 ATOM 15 CA CYS B 3 18.256 32.270 6.766 1.00 56.83 ATOM 16 C CYS B 3 19.474 31.480 7.246 1.00 51.93 ATOM 17 O CYS B 3 19.374 30.341 7.721 1.00 49.65 ATOM 18 CB CYS B 3 17.772 33.235 7.857 1.00 32.20 ATOM 19 SG CYS B 3 17.302 32.409 9.400 1.00 45.43 ATOM 20 N GLY B 4 20.638 32.105 7.117 1.00 43.21 ATOM 21 CA GLY B 4 21.842 31.577 7.717 1.00 44.92 ATOM 22 C GLY B 4 22.514 30.446 6.970 1.00 46.68 ATOM 23 O GLY B 4 23.577 29.990 7.408 1.00 43.62 ATOM 24 N LEU B 5 21.945 29.969 5.869 1.00 55.74 ATOM 25 CA LEU B 5 22.494 28.815 5.158 1.00 52.47 ATOM 26 C LEU B 5 22.963 29.288 3.791 1.00 47.10 ATOM 27 O LEU B 5 22.143 29.637 2.935 1.00 48.61 ATOM 28 CB LEU B 5 21.464 27.690 5.055 1.00 42.87 ATOM 29 CG LEU B 5 21.005 27.156 6.417 1.00 50.53 ATOM 30 CD1 LEU B 5 19.686 26.417 6.297 1.00 60.29 ATOM 31 CD2 LEU B 5 22.051 26.257 7.058 1.00 35.97 ATOM 32 N ARG B 6 24.282 29.298 3.593 1.00 47.34 ATOM 33 CA ARG B 6 24.885 29.929 2.420 1.00 36.18 ATOM 34 C ARG B 6 24.767 29.022 1.199 1.00 47.62 ATOM 35 O ARG B 6 25.159 27.849 1.267 1.00 51.26 ATOM 36 CB ARG B 6 26.350 30.242 2.690 1.00 38.68 ATOM 37 CG ARG B 6 26.575 31.213 3.857 1.00 48.75 ATOM 38 CD ARG B 6 28.057 31.356 4.192 1.00 42.37 ATOM 39 NE ARG B 6 28.618 30.149 4.798 1.00 33.61 ATOM 40 CZ ARG B 6 29.888 30.042 5.170 1.00 36.65 ATOM 41 NH1 ARG B 6 30.331 28.930 5.738 1.00 35.29 ATOM 42 NH2 ARG B 6 30.717 31.065 5.000 1.00 43.72 ATOM 43 N PRO B 7 24.215 29.523 0.078 1.00 55.70 ATOM 44 CA PRO B 7 24.235 28.772 -1.188 1.00 51.52 ATOM 45 C PRO B 7 25.545 28.065 -1.511 1.00 50.23 ATOM 46 O PRO B 7 25.538 26.868 -1.814 1.00 53.92 ATOM 47 CB PRO B 7 23.928 29.868 -2.214 1.00 51.20 ATOM 48 CG PRO B 7 22.937 30.723 -1.491 1.00 50.47 ATOM 49 CD PRO B 7 23.338 30.706 -0.018 1.00 50.15 ATOM 50 N LEU B 8 26.673 28.765 -1.434 1.00 43.03 ATOM 51 CA LEU B 8 27.936 28.203 -1.890 1.00 42.15 ATOM 52 C LEU B 8 28.706 27.456 -0.801 1.00 45.65 ATOM 53 O LEU B 8 29.851 27.044 -1.040 1.00 40.62 ATOM 54 CB LEU B 8 28.809 29.306 -2.497 1.00 35.90 ATOM 55 CG LEU B 8 28.085 30.065 -3.618 1.00 51.24 ATOM 56 CD1 LEU B 8 29.014 31.041 -4.329 1.00 52.72 ATOM 57 CD2 LEU B 8 27.448 29.106 -4.616 1.00 48.31 ATOM 58 N PHE B 9 28.118 27.265 0.381 1.00 43.60 ATOM 59 CA PHE B 9 28.842 26.523 1.409 1.00 48.49 ATOM 60 C PHE B 9 27.944 25.495 2.093 1.00 55.06 ATOM 61 O PHE B 9 28.033 24.302 1.775 1.00 47.88 ATOM 62 CB PHE B 9 29.496 27.501 2.396 1.00 43.27 ATOM 63 CG PHE B 9 30.697 28.197 1.811 1.00 43.27 ATOM 64 CD1 PHE B 9 31.946 27.567 1.790 1.00 40.66 ATOM 65 CD2 PHE B 9 30.568 29.455 1.217 1.00 46.33 ATOM 66 CE1 PHE B 9 33.047 28.189 1.215 1.00 39.77 ATOM 67 CE2 PHE B 9 31.658 30.082 0.630 1.00 35.90 ATOM 68 CZ PHE B 9 32.899 29.458 0.632 1.00 41.78 ATOM 69 N GLU B 10 27.066 25.922 3.004 1.00 50.36 ATOM 70 CA GLU B 10 26.243 24.942 3.712 1.00 49.25 ATOM 71 C GLU B 10 25.366 24.158 2.746 1.00 48.75 ATOM 72 O GLU B 10 25.164 22.950 2.919 1.00 57.00 ATOM 73 CB GLU B 10 25.376 25.622 4.774 1.00 40.80 ATOM 74 CG GLU B 10 26.135 25.943 6.046 1.00 49.19 ATOM 75 CD GLU B 10 26.907 27.261 5.935 1.00 50.06 ATOM 76 OE1 GLU B 10 26.575 28.082 5.031 1.00 45.19 ATOM 77 OE2 GLU B 10 27.852 27.450 6.738 1.00 44.16 ATOM 78 N LYS B 11 24.848 24.828 1.713 1.00 56.56 ATOM 79 CA LYS B 11 23.949 24.168 0.774 1.00 52.95 ATOM 80 C LYS B 11 24.693 23.188 -0.129 1.00 60.36 ATOM 81 O LYS B 11 24.089 22.240 -0.640 1.00 63.93 ATOM 82 CB LYS B 11 23.208 25.214 -0.056 1.00 54.93 ATOM 83 CG LYS B 11 22.361 26.172 0.768 1.00 54.73 ATOM 84 CD LYS B 11 21.103 25.492 1.286 1.00 51.31 ATOM 85 CE LYS B 11 19.959 26.486 1.436 1.00 67.86 ATOM 86 NZ LYS B 11 18.726 25.790 1.906 1.00 77.65 ATOM 87 N LYS B 12 25.994 23.388 -0.330 1.00 63.33 ATOM 88 CA LYS B 12 26.826 22.460 -1.084 1.00 58.06 ATOM 89 C LYS B 12 27.654 21.558 -0.178 1.00 56.09 ATOM 90 O LYS B 12 28.593 20.911 -0.658 1.00 57.47 ATOM 91 CB LYS B 12 27.756 23.227 -2.029 1.00 54.56 ATOM 92 CG LYS B 12 27.051 23.935 -3.178 1.00 66.74 ATOM 93 CD LYS B 12 28.007 24.848 -3.947 1.00 66.95 ATOM 94 CE LYS B 12 29.066 24.058 -4.713 1.00 62.79 ATOM 95 NZ LYS B 12 28.677 23.812 -6.132 1.00 64.09 ATOM 96 N SER B 13 27.344 21.519 1.120 1.00 57.09 ATOM 97 CA SER B 13 28.149 20.803 2.113 1.00 51.12 ATOM 98 C SER B 13 29.639 21.122 1.953 1.00 48.81 ATOM 99 O SER B 13 30.506 20.244 1.985 1.00 53.93 ATOM 100 CB SER B 13 27.884 19.300 2.043 1.00 52.03 ATOM 101 OG SER B 13 26.555 19.012 2.460 1.00 55.19 ATOM 102 N LEU B 14 29.923 22.411 1.777 1.00 51.63 ATOM 103 CA LEU B 14 31.273 22.954 1.688 1.00 50.84 ATOM 104 C LEU B 14 31.543 23.859 2.885 1.00 50.87 ATOM 105 O LEU B 14 30.697 24.673 3.265 1.00 45.93 ATOM 106 CB LEU B 14 31.460 23.751 0.388 1.00 49.11 ATOM 107 CG LEU B 14 31.285 22.951 -0.903 1.00 57.50 ATOM 108 CD1 LEU B 14 31.461 23.836 -2.153 1.00 40.40 ATOM 109 CD2 LEU B 14 32.263 21.775 -0.886 1.00 44.41 ATOM 110 N GLU B 15 32.737 23.732 3.452 1.00 51.18 ATOM 111 CA GLU B 15 33.113 24.508 4.622 0.46 47.96 ATOM 112 C GLU B 15 34.072 25.615 4.215 1.00 50.96 ATOM 113 O GLU B 15 35.002 25.403 3.433 1.00 52.30 ATOM 114 CB GLU B 15 33.716 23.615 5.707 0.46 45.55 ATOM 115 CG GLU B 15 32.646 23.029 6.621 0.46 46.04 ATOM 116 CD GLU B 15 33.072 21.750 7.314 0.46 46.57 ATOM 117 OE1 GLU B 15 32.265 21.211 8.101 0.46 46.32 ATOM 118 OE2 GLU B 15 34.209 21.289 7.078 0.46 49.62 ATOM 119 N ASP B 16 33.815 26.826 4.721 1.00 43.55 ATOM 120 CA ASP B 16 34.719 27.905 4.342 1.00 37.73 ATOM 121 C ASP B 16 36.041 27.738 5.095 1.00 44.08 ATOM 122 O ASP B 16 36.197 26.869 5.958 1.00 40.70 ATOM 123 CB ASP B 16 34.065 29.283 4.536 1.00 46.36 ATOM 124 CG ASP B 16 33.915 29.708 6.014 1.00 45.02 ATOM 125 OD1 ASP B 16 34.858 29.549 6.821 1.00 39.68 ATOM 126 OD2 ASP B 16 32.830 30.232 6.355 1.00 37.68 ATOM 127 N LYS B 17 37.012 28.588 4.763 1.00 48.72 ATOM 128 CA LYS B 17 38.390 28.333 5.173 1.00 61.96 ATOM 129 C LYS B 17 38.635 28.510 6.673 1.00 53.95 ATOM 130 O LYS B 17 39.589 27.925 7.192 1.00 47.64 ATOM 131 CB LYS B 17 39.338 29.230 4.369 1.00 56.90 ATOM 132 CG LYS B 17 39.507 28.769 2.927 1.00 57.84 ATOM 133 CD LYS B 17 40.803 29.276 2.308 1.00 64.11 ATOM 134 CE LYS B 17 41.221 28.416 1.130 1.00 77.99 ATOM 135 NZ LYS B 17 42.019 29.199 0.154 1.00 81.91 ATOM 136 N THR B 18 37.813 29.297 7.385 1.00 44.16 ATOM 137 CA THR B 18 38.070 29.560 8.799 1.00 48.18 ATOM 138 C THR B 18 36.908 29.265 9.734 1.00 43.91 ATOM 139 O THR B 18 37.032 29.532 10.935 1.00 46.17 ATOM 140 CB THR B 18 38.492 31.028 9.025 1.00 41.68 ATOM 141 OG1 THR B 18 37.410 31.911 8.679 1.00 43.44 ATOM 142 CG2 THR B 18 39.741 31.383 8.212 1.00 42.86 ATOM 143 N GLU B 19 35.785 28.744 9.236 1.00 41.55 ATOM 144 CA GLU B 19 34.645 28.520 10.123 1.00 42.19 ATOM 145 C GLU B 19 34.959 27.483 11.198 1.00 41.59 ATOM 146 O GLU B 19 34.378 27.531 12.288 1.00 42.99 ATOM 147 CB GLU B 19 33.403 28.112 9.318 1.00 37.79 ATOM 148 CG GLU B 19 33.509 26.761 8.640 1.00 37.62 ATOM 149 CD GLU B 19 32.203 26.337 7.990 1.00 42.05 ATOM 150 OE1 GLU B 19 31.939 26.719 6.824 1.00 42.39 ATOM 151 OE2 GLU B 19 31.440 25.604 8.648 1.00 43.44 ATOM 152 N ARG B 20 35.897 26.567 10.937 1.00 43.17 ATOM 153 CA ARG B 20 36.243 25.580 11.958 1.00 43.92 ATOM 154 C ARG B 20 36.823 26.247 13.200 1.00 46.43 ATOM 155 O ARG B 20 36.597 25.782 14.325 1.00 47.59 ATOM 156 CB ARG B 20 37.213 24.534 11.397 1.00 44.96 ATOM 157 CG ARG B 20 37.405 23.328 12.327 1.00 55.08 ATOM 158 CD ARG B 20 37.423 21.995 11.573 1.00 77.03 ATOM 159 NE ARG B 20 38.311 21.017 12.204 1.00 78.64 ATOM 160 CZ ARG B 20 37.970 20.254 13.241 1.00 79.86 ATOM 161 NH1 ARG B 20 36.757 20.351 13.769 1.00 86.28 ATOM 162 NH2 ARG B 20 38.843 19.393 13.755 1.00 67.72 ATOM 163 N GLU B 21 37.546 27.351 13.025 1.00 50.53 ATOM 164 CA GLU B 21 38.069 28.051 14.188 0.40 47.62 ATOM 165 C GLU B 21 36.940 28.521 15.106 1.00 47.72 ATOM 166 O GLU B 21 37.111 28.539 16.332 1.00 38.66 ATOM 167 CB GLU B 21 38.970 29.204 13.725 0.40 46.07 ATOM 168 CG GLU B 21 40.261 28.709 13.036 0.40 49.39 ATOM 169 CD GLU B 21 40.854 29.685 12.014 0.40 44.23 ATOM 170 OE1 GLU B 21 42.005 29.480 11.587 0.40 46.03 ATOM 171 OE2 GLU B 21 40.178 30.651 11.630 0.40 38.78 ATOM 172 N LEU B 22 35.771 28.859 14.541 1.00 38.83 ATOM 173 CA LEU B 22 34.627 29.247 15.365 1.00 37.30 ATOM 174 C LEU B 22 34.071 28.049 16.130 1.00 43.23 ATOM 175 O LEU B 22 33.829 28.122 17.346 1.00 29.45 ATOM 176 CB LEU B 22 33.538 29.871 14.490 1.00 35.25 ATOM 177 CG LEU B 22 33.884 31.127 13.682 1.00 34.24 ATOM 178 CD1 LEU B 22 32.681 31.574 12.878 1.00 35.09 ATOM 179 CD2 LEU B 22 34.337 32.254 14.590 1.00 39.98 ATOM 180 N LEU B 23 33.856 26.936 15.423 1.00 32.65 ATOM 181 CA LEU B 23 33.290 25.750 16.050 1.00 42.44 ATOM 182 C LEU B 23 34.151 25.304 17.223 1.00 38.97 ATOM 183 O LEU B 23 33.631 24.959 18.291 1.00 37.06 ATOM 184 CB LEU B 23 33.137 24.638 14.998 1.00 37.97 ATOM 185 CG LEU B 23 32.649 23.254 15.441 1.00 58.35 ATOM 186 CD1 LEU B 23 31.136 23.268 15.669 1.00 55.64 ATOM 187 CD2 LEU B 23 33.029 22.178 14.405 1.00 49.99 ATOM 188 N GLU B 24 35.477 25.399 17.064 1.00 41.88 ATOM 189 CA GLU B 24 36.415 24.970 18.093 1.00 42.30 ATOM 190 C GLU B 24 36.392 25.879 19.308 1.00 49.16 ATOM 191 O GLU B 24 36.720 25.431 20.414 1.00 46.13 ATOM 192 CB GLU B 24 37.830 24.918 17.525 1.00 44.82 ATOM 193 CG GLU B 24 37.999 23.940 16.385 1.00 52.53 ATOM 194 CD GLU B 24 38.299 22.556 16.891 1.00 62.30 ATOM 195 OE1 GLU B 24 39.231 22.436 17.708 1.00 70.13 ATOM 196 OE2 GLU B 24 37.594 21.599 16.499 1.00 67.63 ATOM 197 N SER B 25 36.034 27.154 19.130 1.00 36.67 ATOM 198 CA SER B 25 35.963 28.040 20.285 1.00 40.06 ATOM 199 C SER B 25 34.830 27.638 21.217 1.00 36.83 ATOM 200 O SER B 25 34.892 27.927 22.413 1.00 39.78 ATOM 201 CB SER B 25 35.846 29.518 19.839 1.00 32.49 ATOM 202 OG SER B 25 34.572 29.846 19.318 1.00 37.29 ATOM 203 N TYR B 26 33.820 26.933 20.704 1.00 40.34 ATOM 204 CA TYR B 26 32.800 26.345 21.574 1.00 45.57 ATOM 205 C TYR B 26 33.370 25.267 22.502 1.00 40.32 ATOM 206 O TYR B 26 32.851 25.057 23.603 1.00 48.03 ATOM 207 CB TYR B 26 31.678 25.767 20.713 1.00 41.59 ATOM 208 CG TYR B 26 31.055 26.806 19.819 1.00 44.62 ATOM 209 CD1 TYR B 26 30.858 28.118 20.273 1.00 37.91 ATOM 210 CD2 TYR B 26 30.676 26.490 18.524 1.00 39.31 ATOM 211 CE1 TYR B 26 30.290 29.071 19.456 1.00 47.07 ATOM 212 CE2 TYR B 26 30.109 27.436 17.701 1.00 40.90 ATOM 213 CZ TYR B 26 29.916 28.723 18.165 1.00 44.88 ATOM 214 OH TYR B 26 29.352 29.658 17.331 1.00 45.88 ATOM 215 N ILE B 27 34.419 24.572 22.081 1.00 44.54 ATOM 216 CA ILE B 27 35.079 23.605 22.959 1.00 51.11 ATOM 217 C ILE B 27 36.076 24.299 23.880 1.00 49.62 ATOM 218 O ILE B 27 35.995 24.204 25.111 1.00 49.46 ATOM 219 CB ILE B 27 35.769 22.518 22.121 1.00 48.57 ATOM 220 CG1 ILE B 27 34.816 22.015 21.041 1.00 47.81 ATOM 221 CG2 ILE B 27 36.274 21.400 23.021 1.00 54.41 ATOM 222 CD1 ILE B 27 35.485 21.154 19.986 1.00 55.10 ATOM 223 N ASP B 28 37.030 25.021 23.287 1.00 51.70 ATOM 224 CA ASP B 28 38.141 25.576 24.047 1.00 50.19 ATOM 225 C ASP B 28 37.795 26.884 24.757 1.00 57.04 ATOM 226 O ASP B 28 38.361 27.163 25.821 1.00 63.57 ATOM 227 CB ASP B 28 39.334 25.783 23.116 1.00 44.54 ATOM 228 CG ASP B 28 39.957 24.477 22.686 1.00 51.97 ATOM 229 OD1 ASP B 28 39.700 23.456 23.359 1.00 52.46 ATOM 230 OD2 ASP B 28 40.717 24.471 21.695 1.00 61.19 ATOM 231 N GLY B 29 36.875 27.684 24.206 1.00 55.20 ATOM 232 CA GLY B 29 36.678 29.056 24.666 1.00 48.28 ATOM 233 C GLY B 29 36.097 29.181 26.060 1.00 62.91 ATOM 234 O GLY B 29 36.182 30.262 26.655 1.00 57.11 ATOM 235 N ARG B 30 35.498 28.112 26.586 1.00 64.44 ATOM 236 CA ARG B 30 34.966 28.103 27.951 1.00 71.52 ATOM 237 C ARG B 30 35.214 26.768 28.634 1.00 63.06 ATOM 238 O ARG B 30 35.672 25.805 28.012 1.00 77.25 ATOM 239 CB ARG B 30 33.467 28.405 27.967 1.00 65.29 ATOM 240 CG ARG B 30 33.125 29.832 27.646 1.00 54.65 ATOM 241 CD ARG B 30 31.629 30.033 27.585 1.00 61.85 ATOM 242 NE ARG B 30 31.047 30.249 28.907 1.00 76.44 ATOM 243 CZ ARG B 30 31.016 31.424 29.533 1.00 71.91 ATOM 244 NH1 ARG B 30 31.545 32.500 28.959 1.00 72.17 ATOM 245 NH2 ARG B 30 30.456 31.526 30.735 1.00 59.69 ATOM 246 OXT ARG B 30 34.948 26.643 29.829 1.00 56.09 TER