HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNL TITLE REF6 ZnF2-4-NAC004 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.15 ANGSTORMS DBREF 6JNL A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 A 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 A 30 VAL HIS THR GLY ATOM 1 N ASP A 34 15.924 -9.609 -8.292 1.00 69.22 ATOM 2 CA ASP A 34 16.016 -8.584 -7.287 1.00 72.27 ATOM 3 C ASP A 34 17.415 -8.696 -6.745 1.00 70.12 ATOM 4 O ASP A 34 17.964 -9.795 -6.635 1.00 63.51 ATOM 5 CB ASP A 34 15.013 -8.751 -6.142 1.00 83.02 ATOM 6 CG ASP A 34 13.576 -8.629 -6.608 1.00 98.44 ATOM 7 OD1 ASP A 34 13.218 -7.609 -7.228 1.00109.78 ATOM 8 OD2 ASP A 34 12.801 -9.572 -6.385 1.00114.96 ATOM 9 N ARG A 35 17.972 -7.531 -6.475 1.00 69.39 ATOM 10 CA ARG A 35 19.255 -7.340 -5.828 1.00 64.56 ATOM 11 C ARG A 35 18.969 -6.355 -4.689 1.00 61.77 ATOM 12 O ARG A 35 19.298 -5.192 -4.803 1.00 57.51 ATOM 13 CB ARG A 35 20.236 -6.771 -6.849 1.00 61.30 ATOM 14 CG ARG A 35 20.510 -7.719 -8.048 1.00 50.16 ATOM 15 CD ARG A 35 21.682 -7.170 -8.907 1.00 56.98 ATOM 16 NE ARG A 35 22.977 -7.308 -8.225 1.00 61.82 ATOM 17 CZ ARG A 35 23.687 -8.448 -8.138 1.00 63.29 ATOM 18 NH1 ARG A 35 23.282 -9.570 -8.736 1.00 59.40 ATOM 19 NH2 ARG A 35 24.824 -8.492 -7.447 1.00 56.45 ATOM 20 N PRO A 36 18.305 -6.836 -3.610 1.00 57.89 ATOM 21 CA PRO A 36 17.855 -5.973 -2.545 1.00 64.50 ATOM 22 C PRO A 36 18.907 -5.387 -1.612 1.00 66.61 ATOM 23 O PRO A 36 18.600 -4.388 -0.996 1.00 65.82 ATOM 24 CB PRO A 36 16.886 -6.860 -1.742 1.00 62.77 ATOM 25 CG PRO A 36 17.184 -8.241 -2.074 1.00 58.87 ATOM 26 CD PRO A 36 18.010 -8.253 -3.323 1.00 57.80 ATOM 27 N LEU A 37 20.106 -5.965 -1.499 1.00 64.28 ATOM 28 CA LEU A 37 21.162 -5.407 -0.598 1.00 53.33 ATOM 29 C LEU A 37 21.930 -4.368 -1.377 1.00 53.12 ATOM 30 O LEU A 37 22.167 -4.527 -2.592 1.00 57.40 ATOM 31 CB LEU A 37 22.089 -6.509 -0.134 1.00 56.14 ATOM 32 CG LEU A 37 21.338 -7.715 0.490 1.00 59.66 ATOM 33 CD1 LEU A 37 22.256 -8.820 0.933 1.00 64.24 ATOM 34 CD2 LEU A 37 20.447 -7.343 1.676 1.00 59.61 ATOM 35 N LYS A 38 22.280 -3.300 -0.694 1.00 50.74 ATOM 36 CA LYS A 38 22.912 -2.126 -1.300 1.00 58.58 ATOM 37 C LYS A 38 24.268 -1.834 -0.617 1.00 57.31 ATOM 38 O LYS A 38 24.484 -2.204 0.527 1.00 60.88 ATOM 39 CB LYS A 38 22.002 -0.898 -1.181 1.00 67.93 ATOM 40 CG LYS A 38 20.568 -1.092 -1.683 1.00 82.91 ATOM 41 CD LYS A 38 20.517 -1.413 -3.185 1.00102.32 ATOM 42 CE LYS A 38 19.453 -2.438 -3.616 1.00103.96 ATOM 43 NZ LYS A 38 18.224 -1.847 -4.197 1.00116.82 ATOM 44 N CYS A 39 25.185 -1.212 -1.351 1.00 54.40 ATOM 45 CA CYS A 39 26.465 -0.821 -0.815 1.00 50.20 ATOM 46 C CYS A 39 26.264 0.436 -0.015 1.00 52.26 ATOM 47 O CYS A 39 25.765 1.400 -0.549 1.00 54.44 ATOM 48 CB CYS A 39 27.520 -0.542 -1.896 1.00 56.36 ATOM 49 SG CYS A 39 29.151 -0.160 -1.164 1.00 50.57 ATOM 50 N PRO A 40 26.751 0.469 1.231 1.00 53.74 ATOM 51 CA PRO A 40 26.604 1.683 2.008 1.00 56.91 ATOM 52 C PRO A 40 27.612 2.735 1.662 1.00 51.00 ATOM 53 O PRO A 40 27.543 3.783 2.193 1.00 56.10 ATOM 54 CB PRO A 40 26.837 1.191 3.446 1.00 58.28 ATOM 55 CG PRO A 40 27.828 0.097 3.270 1.00 52.34 ATOM 56 CD PRO A 40 27.399 -0.586 2.018 1.00 49.75 ATOM 57 N TRP A 41 28.550 2.505 0.776 1.00 54.39 ATOM 58 CA TRP A 41 29.473 3.575 0.448 1.00 49.70 ATOM 59 C TRP A 41 28.820 4.640 -0.410 1.00 57.40 ATOM 60 O TRP A 41 27.987 4.371 -1.297 1.00 53.62 ATOM 61 CB TRP A 41 30.656 3.037 -0.304 1.00 56.21 ATOM 62 CG TRP A 41 31.870 3.845 -0.243 1.00 57.73 ATOM 63 CD1 TRP A 41 32.312 4.769 -1.160 1.00 61.22 ATOM 64 CD2 TRP A 41 32.865 3.775 0.766 1.00 57.59 ATOM 65 NE1 TRP A 41 33.543 5.258 -0.777 1.00 56.90 ATOM 66 CE2 TRP A 41 33.896 4.675 0.406 1.00 55.60 ATOM 67 CE3 TRP A 41 32.983 3.047 1.954 1.00 54.94 ATOM 68 CZ2 TRP A 41 35.035 4.851 1.182 1.00 61.87 ATOM 69 CZ3 TRP A 41 34.110 3.212 2.718 1.00 55.92 ATOM 70 CH2 TRP A 41 35.132 4.112 2.328 1.00 51.60 ATOM 71 N LYS A 42 29.258 5.850 -0.133 1.00 62.16 ATOM 72 CA LYS A 42 28.667 7.057 -0.654 1.00 69.80 ATOM 73 C LYS A 42 28.761 7.033 -2.135 1.00 64.60 ATOM 74 O LYS A 42 29.852 7.120 -2.650 1.00 65.80 ATOM 75 CB LYS A 42 29.481 8.224 -0.153 1.00 84.41 ATOM 76 CG LYS A 42 29.334 9.542 -0.872 1.00 89.88 ATOM 77 CD LYS A 42 28.092 10.272 -0.468 1.00 83.80 ATOM 78 CE LYS A 42 28.335 11.718 -0.829 1.00 85.97 ATOM 79 NZ LYS A 42 27.019 12.337 -1.037 1.00 86.70 ATOM 80 N GLY A 43 27.609 6.901 -2.793 1.00 63.33 ATOM 81 CA GLY A 43 27.522 6.915 -4.231 1.00 69.43 ATOM 82 C GLY A 43 28.235 5.762 -4.866 1.00 70.13 ATOM 83 O GLY A 43 28.924 5.940 -5.822 1.00 76.90 ATOM 84 N CYS A 44 28.133 4.588 -4.276 1.00 70.12 ATOM 85 CA CYS A 44 28.474 3.366 -4.961 1.00 69.14 ATOM 86 C CYS A 44 27.121 2.727 -5.238 1.00 63.43 ATOM 87 O CYS A 44 26.243 2.727 -4.358 1.00 61.32 ATOM 88 CB CYS A 44 29.353 2.476 -4.083 1.00 69.58 ATOM 89 SG CYS A 44 29.544 0.819 -4.729 1.00 61.60 ATOM 90 N LYS A 45 26.957 2.212 -6.453 1.00 59.62 ATOM 91 CA LYS A 45 25.650 1.751 -6.956 1.00 62.66 ATOM 92 C LYS A 45 25.549 0.263 -6.962 1.00 64.75 ATOM 93 O LYS A 45 24.478 -0.306 -7.265 1.00 57.42 ATOM 94 CB LYS A 45 25.388 2.363 -8.346 1.00 76.82 ATOM 95 CG LYS A 45 24.705 3.740 -8.338 1.00 83.00 ATOM 96 CD LYS A 45 24.912 4.555 -7.049 1.00101.08 ATOM 97 CE LYS A 45 23.946 5.715 -6.909 1.00109.12 ATOM 98 NZ LYS A 45 23.996 6.568 -8.129 1.00121.91 ATOM 99 N MET A 46 26.633 -0.387 -6.543 1.00 62.16 ATOM 100 CA MET A 46 26.614 -1.843 -6.383 1.00 60.40 ATOM 101 C MET A 46 25.480 -2.342 -5.493 1.00 56.84 ATOM 102 O MET A 46 25.157 -1.732 -4.470 1.00 56.50 ATOM 103 CB MET A 46 27.927 -2.334 -5.806 1.00 69.74 ATOM 104 CG MET A 46 28.307 -3.726 -6.215 1.00 85.68 ATOM 105 SD MET A 46 28.768 -3.728 -7.945 1.00103.11 ATOM 106 CE MET A 46 29.245 -2.039 -8.431 1.00 77.87 ATOM 107 N THR A 47 24.925 -3.493 -5.872 1.00 53.46 ATOM 108 CA THR A 47 23.821 -4.109 -5.195 1.00 53.90 ATOM 109 C THR A 47 24.079 -5.595 -5.133 1.00 52.53 ATOM 110 O THR A 47 24.876 -6.068 -5.875 1.00 46.76 ATOM 111 CB THR A 47 22.513 -3.886 -5.958 1.00 59.68 ATOM 112 OG1 THR A 47 22.605 -4.549 -7.214 1.00 61.05 ATOM 113 CG2 THR A 47 22.272 -2.429 -6.173 1.00 50.73 ATOM 114 N PHE A 48 23.392 -6.329 -4.266 1.00 49.63 ATOM 115 CA PHE A 48 23.746 -7.699 -4.048 1.00 49.49 ATOM 116 C PHE A 48 22.548 -8.507 -3.713 1.00 54.48 ATOM 117 O PHE A 48 21.519 -7.942 -3.343 1.00 54.32 ATOM 118 CB PHE A 48 24.688 -7.826 -2.826 1.00 50.74 ATOM 119 CG PHE A 48 25.866 -6.941 -2.910 1.00 55.35 ATOM 120 CD1 PHE A 48 25.796 -5.660 -2.432 1.00 58.21 ATOM 121 CD2 PHE A 48 27.016 -7.368 -3.565 1.00 57.01 ATOM 122 CE1 PHE A 48 26.864 -4.832 -2.570 1.00 54.92 ATOM 123 CE2 PHE A 48 28.098 -6.547 -3.697 1.00 54.91 ATOM 124 CZ PHE A 48 28.000 -5.268 -3.215 1.00 57.00 ATOM 125 N LYS A 49 22.706 -9.832 -3.785 1.00 48.82 ATOM 126 CA LYS A 49 21.683 -10.755 -3.225 1.00 54.14 ATOM 127 C LYS A 49 22.091 -11.440 -1.948 1.00 57.77 ATOM 128 O LYS A 49 21.257 -11.967 -1.212 1.00 51.92 ATOM 129 CB LYS A 49 21.419 -11.865 -4.236 1.00 51.87 ATOM 130 CG LYS A 49 21.111 -11.343 -5.642 1.00 56.01 ATOM 131 CD LYS A 49 20.443 -12.452 -6.457 1.00 58.05 ATOM 132 CE LYS A 49 20.225 -12.040 -7.908 1.00 61.23 ATOM 133 NZ LYS A 49 19.950 -13.300 -8.666 1.00 62.59 ATOM 134 N TRP A 50 23.401 -11.514 -1.735 1.00 49.94 ATOM 135 CA TRP A 50 23.941 -12.263 -0.647 1.00 47.36 ATOM 136 C TRP A 50 24.684 -11.329 0.241 1.00 48.40 ATOM 137 O TRP A 50 25.512 -10.502 -0.222 1.00 52.24 ATOM 138 CB TRP A 50 24.884 -13.257 -1.241 1.00 54.24 ATOM 139 CG TRP A 50 24.242 -14.307 -2.108 1.00 56.22 ATOM 140 CD1 TRP A 50 24.464 -14.543 -3.425 1.00 55.91 ATOM 141 CD2 TRP A 50 23.332 -15.319 -1.661 1.00 57.96 ATOM 142 NE1 TRP A 50 23.733 -15.652 -3.843 1.00 56.70 ATOM 143 CE2 TRP A 50 23.045 -16.151 -2.771 1.00 58.52 ATOM 144 CE3 TRP A 50 22.764 -15.620 -0.425 1.00 56.10 ATOM 145 CZ2 TRP A 50 22.185 -17.236 -2.690 1.00 60.11 ATOM 146 CZ3 TRP A 50 21.913 -16.727 -0.342 1.00 61.74 ATOM 147 CH2 TRP A 50 21.622 -17.507 -1.478 1.00 62.18 ATOM 148 N ALA A 51 24.451 -11.469 1.527 1.00 47.56 ATOM 149 CA ALA A 51 24.955 -10.491 2.451 1.00 51.14 ATOM 150 C ALA A 51 26.515 -10.605 2.528 1.00 50.87 ATOM 151 O ALA A 51 27.210 -9.600 2.704 1.00 51.01 ATOM 152 CB ALA A 51 24.338 -10.738 3.800 1.00 47.50 ATOM 153 N TRP A 52 27.038 -11.831 2.427 1.00 45.84 ATOM 154 CA TRP A 52 28.472 -12.027 2.474 1.00 47.61 ATOM 155 C TRP A 52 29.174 -11.248 1.301 1.00 49.79 ATOM 156 O TRP A 52 30.255 -10.679 1.510 1.00 49.53 ATOM 157 CB TRP A 52 28.879 -13.493 2.465 1.00 43.56 ATOM 158 CG TRP A 52 30.370 -13.624 2.661 1.00 50.75 ATOM 159 CD1 TRP A 52 31.303 -14.042 1.742 1.00 54.99 ATOM 160 CD2 TRP A 52 31.092 -13.259 3.831 1.00 48.04 ATOM 161 NE1 TRP A 52 32.545 -13.985 2.287 1.00 52.13 ATOM 162 CE2 TRP A 52 32.453 -13.477 3.560 1.00 50.90 ATOM 163 CE3 TRP A 52 30.710 -12.749 5.095 1.00 50.23 ATOM 164 CZ2 TRP A 52 33.456 -13.227 4.507 1.00 50.58 ATOM 165 CZ3 TRP A 52 31.712 -12.457 6.035 1.00 50.19 ATOM 166 CH2 TRP A 52 33.068 -12.717 5.739 1.00 51.84 ATOM 167 N SER A 53 28.552 -11.176 0.118 1.00 47.82 ATOM 168 CA SER A 53 29.180 -10.510 -0.970 1.00 48.78 ATOM 169 C SER A 53 29.278 -9.087 -0.570 1.00 51.31 ATOM 170 O SER A 53 30.287 -8.430 -0.895 1.00 43.77 ATOM 171 CB SER A 53 28.403 -10.542 -2.289 1.00 53.53 ATOM 172 OG SER A 53 28.425 -11.806 -2.885 1.00 63.61 ATOM 173 N ARG A 54 28.204 -8.573 0.042 1.00 44.53 ATOM 174 CA ARG A 54 28.206 -7.169 0.402 1.00 44.08 ATOM 175 C ARG A 54 29.315 -6.868 1.454 1.00 45.11 ATOM 176 O ARG A 54 30.022 -5.852 1.366 1.00 42.63 ATOM 177 CB ARG A 54 26.836 -6.753 0.891 1.00 49.80 ATOM 178 CG ARG A 54 26.701 -5.343 1.467 1.00 50.31 ATOM 179 CD ARG A 54 25.300 -5.146 2.004 1.00 56.97 ATOM 180 NE ARG A 54 25.177 -3.858 2.659 1.00 61.73 ATOM 181 CZ ARG A 54 25.537 -3.587 3.934 1.00 67.65 ATOM 182 NH1 ARG A 54 26.060 -4.524 4.752 1.00 62.94 ATOM 183 NH2 ARG A 54 25.376 -2.360 4.418 1.00 56.49 ATOM 184 N THR A 55 29.401 -7.712 2.469 1.00 40.70 ATOM 185 CA THR A 55 30.441 -7.549 3.502 1.00 49.09 ATOM 186 C THR A 55 31.838 -7.464 2.904 1.00 46.75 ATOM 187 O THR A 55 32.531 -6.474 3.129 1.00 54.90 ATOM 188 CB THR A 55 30.341 -8.735 4.421 1.00 49.36 ATOM 189 OG1 THR A 55 29.046 -8.697 4.917 1.00 46.82 ATOM 190 CG2 THR A 55 31.394 -8.772 5.646 1.00 43.14 ATOM 191 N GLU A 56 32.191 -8.449 2.068 1.00 40.54 ATOM 192 CA GLU A 56 33.548 -8.482 1.467 1.00 44.90 ATOM 193 C GLU A 56 33.746 -7.277 0.555 1.00 44.23 ATOM 194 O GLU A 56 34.821 -6.642 0.547 1.00 44.27 ATOM 195 CB GLU A 56 33.822 -9.799 0.743 1.00 46.63 ATOM 196 CG GLU A 56 33.777 -10.982 1.699 1.00 44.07 ATOM 197 CD GLU A 56 34.810 -12.060 1.405 1.00 51.14 ATOM 198 OE1 GLU A 56 35.866 -12.125 2.111 1.00 48.21 ATOM 199 OE2 GLU A 56 34.572 -12.816 0.458 1.00 38.43 ATOM 200 N HIS A 57 32.684 -6.909 -0.157 1.00 41.20 ATOM 201 CA HIS A 57 32.770 -5.802 -1.082 1.00 45.27 ATOM 202 C HIS A 57 33.150 -4.471 -0.442 1.00 42.43 ATOM 203 O HIS A 57 33.821 -3.664 -1.042 1.00 44.09 ATOM 204 CB HIS A 57 31.459 -5.655 -1.883 1.00 45.23 ATOM 205 CG HIS A 57 31.300 -4.314 -2.540 1.00 48.31 ATOM 206 ND1 HIS A 57 31.870 -3.992 -3.758 1.00 45.75 ATOM 207 CD2 HIS A 57 30.676 -3.194 -2.113 1.00 49.20 ATOM 208 CE1 HIS A 57 31.538 -2.759 -4.080 1.00 42.08 ATOM 209 NE2 HIS A 57 30.819 -2.258 -3.098 1.00 50.38 ATOM 210 N ILE A 58 32.728 -4.234 0.776 1.00 47.90 ATOM 211 CA ILE A 58 32.984 -2.901 1.395 1.00 49.71 ATOM 212 C ILE A 58 34.493 -2.705 1.545 1.00 48.85 ATOM 213 O ILE A 58 34.933 -1.575 1.511 1.00 53.37 ATOM 214 CB ILE A 58 32.236 -2.748 2.748 1.00 43.80 ATOM 215 CG1 ILE A 58 30.701 -2.637 2.539 1.00 55.72 ATOM 216 CG2 ILE A 58 32.733 -1.542 3.563 1.00 46.57 ATOM 217 CD1 ILE A 58 29.874 -3.178 3.738 1.00 57.28 ATOM 218 N ARG A 59 35.247 -3.806 1.671 1.00 46.84 ATOM 219 CA ARG A 59 36.705 -3.788 1.774 1.00 50.02 ATOM 220 C ARG A 59 37.368 -3.308 0.532 1.00 48.68 ATOM 221 O ARG A 59 38.492 -2.748 0.590 1.00 49.41 ATOM 222 CB ARG A 59 37.301 -5.146 2.194 1.00 50.01 ATOM 223 CG ARG A 59 36.687 -5.704 3.494 1.00 45.32 ATOM 224 CD ARG A 59 37.252 -7.045 3.836 1.00 49.25 ATOM 225 NE ARG A 59 36.367 -7.917 4.630 1.00 44.88 ATOM 226 CZ ARG A 59 36.113 -9.197 4.393 1.00 48.78 ATOM 227 NH1 ARG A 59 36.640 -9.848 3.335 1.00 47.21 ATOM 228 NH2 ARG A 59 35.339 -9.905 5.257 1.00 55.27 ATOM 229 N VAL A 60 36.693 -3.417 -0.603 1.00 48.51 ATOM 230 CA VAL A 60 37.296 -2.778 -1.742 1.00 48.90 ATOM 231 C VAL A 60 37.304 -1.267 -1.490 1.00 51.26 ATOM 232 O VAL A 60 38.208 -0.599 -1.924 1.00 52.57 ATOM 233 CB VAL A 60 36.808 -3.197 -3.158 1.00 54.61 ATOM 234 CG1 VAL A 60 36.284 -4.631 -3.201 1.00 57.30 ATOM 235 CG2 VAL A 60 35.826 -2.261 -3.780 1.00 62.35 ATOM 236 N HIS A 61 36.324 -0.734 -0.779 1.00 49.56 ATOM 237 CA HIS A 61 36.300 0.706 -0.514 1.00 50.49 ATOM 238 C HIS A 61 37.285 1.044 0.563 1.00 53.90 ATOM 239 O HIS A 61 38.005 1.947 0.411 1.00 53.27 ATOM 240 CB HIS A 61 34.925 1.177 -0.151 1.00 52.08 ATOM 241 CG HIS A 61 33.938 1.078 -1.277 1.00 52.68 ATOM 242 ND1 HIS A 61 34.081 1.800 -2.436 1.00 62.16 ATOM 243 CD2 HIS A 61 32.758 0.403 -1.402 1.00 52.11 ATOM 244 CE1 HIS A 61 33.050 1.574 -3.236 1.00 52.58 ATOM 245 NE2 HIS A 61 32.231 0.735 -2.629 1.00 51.64 ATOM 246 N THR A 62 37.393 0.265 1.624 1.00 57.54 ATOM 247 CA THR A 62 38.295 0.638 2.731 1.00 56.77 ATOM 248 C THR A 62 39.765 0.273 2.544 1.00 53.74 ATOM 249 O THR A 62 40.611 0.874 3.156 1.00 55.84 ATOM 250 CB THR A 62 37.825 -0.009 4.043 1.00 51.68 ATOM 251 OG1 THR A 62 37.900 -1.435 3.926 1.00 52.40 ATOM 252 CG2 THR A 62 36.418 0.351 4.308 1.00 49.21 ATOM 253 N GLY A 63 40.066 -0.732 1.740 1.00 48.06 ATOM 254 CA GLY A 63 41.434 -1.203 1.610 1.00 49.62 ATOM 255 C GLY A 63 41.771 -2.212 2.680 1.00 51.72 ATOM 256 O GLY A 63 42.853 -2.729 2.697 1.00 60.96 TER