HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 28 ARG ASN ILE CYS PRO ILE LYS GLY CYS GLY LYS ASN PHE SEQRES 2 A 28 PHE SER HIS LYS TYR LEU VAL GLN HIS GLN ARG VAL HIS SEQRES 3 A 28 SER ASP ATOM 1 N ARG A 6 8.596 103.957 1.539 1.00 74.90 ATOM 2 CA ARG A 6 9.296 105.028 0.781 1.00 72.64 ATOM 3 C ARG A 6 10.516 105.408 1.652 1.00 69.04 ATOM 4 O ARG A 6 10.598 106.500 2.260 1.00 62.71 ATOM 5 CB ARG A 6 8.318 106.166 0.534 1.00 78.62 ATOM 6 CG ARG A 6 8.733 107.356 -0.312 1.00 85.55 ATOM 7 CD ARG A 6 7.771 108.515 -0.008 1.00 93.64 ATOM 8 NE ARG A 6 7.808 108.893 1.424 1.00102.13 ATOM 9 CZ ARG A 6 7.018 108.426 2.412 1.00 99.71 ATOM 10 NH1 ARG A 6 7.203 108.853 3.659 1.00 92.64 ATOM 11 NH2 ARG A 6 6.051 107.533 2.195 1.00104.25 ATOM 12 N ASN A 7 11.392 104.402 1.765 1.00 55.72 ATOM 13 CA ASN A 7 12.847 104.504 2.024 1.00 51.05 ATOM 14 C ASN A 7 13.240 105.055 3.377 1.00 48.32 ATOM 15 O ASN A 7 13.926 106.086 3.507 1.00 47.00 ATOM 16 CB ASN A 7 13.552 105.251 0.895 1.00 48.40 ATOM 17 CG ASN A 7 13.103 104.783 -0.457 1.00 49.53 ATOM 18 OD1 ASN A 7 13.406 103.653 -0.878 1.00 46.20 ATOM 19 ND2 ASN A 7 12.371 105.651 -1.154 1.00 46.83 ATOM 20 N ILE A 8 12.856 104.300 4.383 1.00 46.59 ATOM 21 CA ILE A 8 12.949 104.728 5.759 1.00 45.70 ATOM 22 C ILE A 8 14.152 104.053 6.315 1.00 43.60 ATOM 23 O ILE A 8 14.350 102.841 6.064 1.00 37.12 ATOM 24 CB ILE A 8 11.761 104.274 6.600 1.00 48.53 ATOM 25 CG1 ILE A 8 10.443 104.612 5.864 1.00 55.64 ATOM 26 CG2 ILE A 8 11.893 104.857 8.011 1.00 46.41 ATOM 27 CD1 ILE A 8 9.909 103.526 4.901 1.00 60.61 ATOM 28 N CYS A 9 14.951 104.819 7.072 1.00 40.55 ATOM 29 CA CYS A 9 16.192 104.276 7.584 1.00 39.02 ATOM 30 C CYS A 9 15.820 103.604 8.856 1.00 35.63 ATOM 31 O CYS A 9 15.116 104.185 9.660 1.00 32.59 ATOM 32 CB CYS A 9 17.265 105.338 7.738 1.00 36.54 ATOM 33 SG CYS A 9 18.657 105.161 8.850 1.00 40.91 ATOM 34 N PRO A 10 16.259 102.361 9.003 1.00 36.01 ATOM 35 CA PRO A 10 15.839 101.589 10.175 1.00 40.51 ATOM 36 C PRO A 10 16.685 101.854 11.369 1.00 41.04 ATOM 37 O PRO A 10 16.294 101.461 12.466 1.00 38.72 ATOM 38 CB PRO A 10 16.029 100.119 9.728 1.00 39.07 ATOM 39 CG PRO A 10 17.116 100.166 8.690 1.00 37.84 ATOM 40 CD PRO A 10 17.029 101.542 8.038 1.00 37.43 ATOM 41 N ILE A 11 17.847 102.477 11.202 1.00 37.45 ATOM 42 CA ILE A 11 18.744 102.612 12.347 1.00 32.77 ATOM 43 C ILE A 11 18.070 103.369 13.550 1.00 33.07 ATOM 44 O ILE A 11 17.271 104.321 13.408 1.00 31.89 ATOM 45 CB ILE A 11 20.135 103.121 11.907 1.00 34.43 ATOM 46 CG1 ILE A 11 21.019 101.961 11.400 1.00 38.49 ATOM 47 CG2 ILE A 11 20.910 103.699 13.085 1.00 33.46 ATOM 48 CD1 ILE A 11 20.506 101.197 10.239 1.00 43.45 ATOM 49 N LYS A 12 18.407 102.916 14.753 1.00 38.97 ATOM 50 CA LYS A 12 17.790 103.403 15.999 1.00 40.92 ATOM 51 C LYS A 12 18.106 104.877 16.124 1.00 41.73 ATOM 52 O LYS A 12 19.262 105.239 15.985 1.00 41.48 ATOM 53 CB LYS A 12 18.344 102.615 17.209 1.00 49.35 ATOM 54 CG LYS A 12 17.485 102.614 18.482 1.00 58.21 ATOM 55 CD LYS A 12 17.769 103.794 19.427 1.00 64.65 ATOM 56 CE LYS A 12 16.528 104.202 20.239 1.00 64.65 ATOM 57 NZ LYS A 12 16.130 103.138 21.213 1.00 62.44 ATOM 58 N GLY A 13 17.070 105.695 16.366 1.00 42.56 ATOM 59 CA GLY A 13 17.172 107.151 16.519 1.00 37.23 ATOM 60 C GLY A 13 17.466 107.943 15.242 1.00 37.28 ATOM 61 O GLY A 13 17.793 109.101 15.357 1.00 35.84 ATOM 62 N CYS A 14 17.354 107.356 14.036 1.00 37.31 ATOM 63 CA CYS A 14 17.466 108.103 12.780 1.00 35.81 ATOM 64 C CYS A 14 16.033 108.273 12.253 1.00 39.34 ATOM 65 O CYS A 14 15.487 109.394 12.203 1.00 41.85 ATOM 66 CB CYS A 14 18.440 107.342 11.782 1.00 38.88 ATOM 67 SG CYS A 14 18.563 107.465 9.918 1.00 47.72 ATOM 68 N GLY A 15 15.493 107.149 11.775 1.00 42.97 ATOM 69 CA GLY A 15 14.237 107.026 11.029 1.00 42.66 ATOM 70 C GLY A 15 13.984 108.103 10.013 1.00 48.54 ATOM 71 O GLY A 15 12.853 108.544 9.878 1.00 49.50 ATOM 72 N LYS A 16 15.022 108.571 9.314 1.00 42.32 ATOM 73 CA LYS A 16 14.792 109.524 8.246 1.00 42.55 ATOM 74 C LYS A 16 14.175 108.770 7.050 1.00 38.60 ATOM 75 O LYS A 16 14.354 107.543 6.929 1.00 36.10 ATOM 76 CB LYS A 16 16.107 110.154 7.855 1.00 46.15 ATOM 77 CG LYS A 16 16.729 110.982 8.953 1.00 47.08 ATOM 78 CD LYS A 16 16.615 112.474 8.635 1.00 58.27 ATOM 79 CE LYS A 16 17.981 113.142 8.535 1.00 55.29 ATOM 80 NZ LYS A 16 18.748 112.792 9.767 1.00 53.63 ATOM 81 N ASN A 17 13.499 109.482 6.160 1.00 36.01 ATOM 82 CA ASN A 17 12.925 108.841 4.975 1.00 42.00 ATOM 83 C ASN A 17 13.607 109.565 3.810 1.00 36.11 ATOM 84 O ASN A 17 13.915 110.729 3.918 1.00 37.70 ATOM 85 CB ASN A 17 11.359 108.923 4.946 1.00 44.01 ATOM 86 CG ASN A 17 10.814 109.780 3.775 1.00 54.95 ATOM 87 OD1 ASN A 17 10.716 109.318 2.610 1.00 70.40 ATOM 88 ND2 ASN A 17 10.463 111.032 4.073 1.00 54.25 ATOM 89 N PHE A 18 13.809 108.888 2.692 1.00 35.19 ATOM 90 CA PHE A 18 14.599 109.449 1.602 1.00 36.95 ATOM 91 C PHE A 18 13.838 109.370 0.310 1.00 41.71 ATOM 92 O PHE A 18 12.894 108.579 0.148 1.00 47.79 ATOM 93 CB PHE A 18 15.973 108.779 1.497 1.00 34.58 ATOM 94 CG PHE A 18 16.772 108.917 2.760 1.00 32.05 ATOM 95 CD1 PHE A 18 17.409 110.129 3.060 1.00 31.07 ATOM 96 CD2 PHE A 18 16.812 107.899 3.676 1.00 29.76 ATOM 97 CE1 PHE A 18 18.123 110.277 4.229 1.00 30.52 ATOM 98 CE2 PHE A 18 17.471 108.048 4.877 1.00 32.91 ATOM 99 CZ PHE A 18 18.145 109.231 5.153 1.00 33.07 ATOM 100 N PHE A 19 14.283 110.200 -0.610 1.00 42.65 ATOM 101 CA PHE A 19 13.691 110.286 -1.913 1.00 45.78 ATOM 102 C PHE A 19 13.835 108.992 -2.710 1.00 42.54 ATOM 103 O PHE A 19 13.111 108.783 -3.657 1.00 48.81 ATOM 104 CB PHE A 19 14.283 111.529 -2.662 1.00 46.98 ATOM 105 CG PHE A 19 15.682 111.333 -3.267 1.00 47.08 ATOM 106 CD1 PHE A 19 16.858 111.497 -2.489 1.00 48.92 ATOM 107 CD2 PHE A 19 15.837 111.034 -4.654 1.00 45.27 ATOM 108 CE1 PHE A 19 18.126 111.320 -3.065 1.00 41.46 ATOM 109 CE2 PHE A 19 17.114 110.847 -5.211 1.00 45.36 ATOM 110 CZ PHE A 19 18.261 110.988 -4.408 1.00 38.35 ATOM 111 N SER A 20 14.802 108.143 -2.361 1.00 40.02 ATOM 112 CA SER A 20 15.148 107.006 -3.179 1.00 33.07 ATOM 113 C SER A 20 15.769 105.930 -2.321 1.00 37.52 ATOM 114 O SER A 20 16.307 106.206 -1.247 1.00 37.81 ATOM 115 CB SER A 20 16.154 107.405 -4.270 1.00 32.46 ATOM 116 OG SER A 20 17.496 107.279 -3.794 1.00 31.18 ATOM 117 N HIS A 21 15.721 104.696 -2.822 1.00 33.89 ATOM 118 CA HIS A 21 16.259 103.562 -2.118 1.00 33.88 ATOM 119 C HIS A 21 17.766 103.625 -2.181 1.00 32.26 ATOM 120 O HIS A 21 18.460 103.301 -1.196 1.00 29.88 ATOM 121 CB HIS A 21 15.762 102.266 -2.812 1.00 41.29 ATOM 122 CG HIS A 21 15.917 101.031 -1.986 1.00 44.46 ATOM 123 ND1 HIS A 21 16.918 100.881 -1.051 1.00 45.77 ATOM 124 CD2 HIS A 21 15.200 99.882 -1.956 1.00 47.80 ATOM 125 CE1 HIS A 21 16.797 99.714 -0.455 1.00 46.81 ATOM 126 NE2 HIS A 21 15.766 99.084 -0.989 1.00 51.00 ATOM 127 N LYS A 22 18.281 103.979 -3.372 1.00 30.86 ATOM 128 CA LYS A 22 19.701 104.008 -3.616 1.00 32.60 ATOM 129 C LYS A 22 20.411 105.001 -2.646 1.00 31.03 ATOM 130 O LYS A 22 21.531 104.738 -2.179 1.00 31.07 ATOM 131 CB LYS A 22 19.989 104.395 -5.068 1.00 37.71 ATOM 132 CG LYS A 22 21.416 104.062 -5.442 1.00 44.87 ATOM 133 CD LYS A 22 21.976 104.986 -6.527 1.00 56.17 ATOM 134 CE LYS A 22 23.529 105.115 -6.453 1.00 57.81 ATOM 135 NZ LYS A 22 24.123 106.039 -7.485 1.00 53.37 ATOM 136 N TYR A 23 19.761 106.130 -2.351 1.00 29.02 ATOM 137 CA TYR A 23 20.315 107.099 -1.341 1.00 27.09 ATOM 138 C TYR A 23 20.216 106.564 0.091 1.00 26.09 ATOM 139 O TYR A 23 21.166 106.689 0.904 1.00 25.46 ATOM 140 CB TYR A 23 19.736 108.557 -1.477 1.00 25.46 ATOM 141 CG TYR A 23 20.555 109.419 -0.516 1.00 24.65 ATOM 142 CD1 TYR A 23 21.935 109.699 -0.769 1.00 26.80 ATOM 143 CD2 TYR A 23 20.037 109.797 0.711 1.00 23.58 ATOM 144 CE1 TYR A 23 22.709 110.366 0.174 1.00 25.98 ATOM 145 CE2 TYR A 23 20.813 110.451 1.630 1.00 21.16 ATOM 146 CZ TYR A 23 22.134 110.743 1.358 1.00 21.69 ATOM 147 OH TYR A 23 22.879 111.381 2.300 1.00 20.94 ATOM 148 N LEU A 24 19.093 105.895 0.385 1.00 27.11 ATOM 149 CA LEU A 24 18.969 105.192 1.631 1.00 26.36 ATOM 150 C LEU A 24 20.164 104.296 1.910 1.00 27.78 ATOM 151 O LEU A 24 20.662 104.290 3.051 1.00 26.72 ATOM 152 CB LEU A 24 17.639 104.437 1.772 1.00 31.28 ATOM 153 CG LEU A 24 17.572 103.446 2.998 1.00 34.77 ATOM 154 CD1 LEU A 24 17.595 104.154 4.367 1.00 34.65 ATOM 155 CD2 LEU A 24 16.331 102.536 2.859 1.00 38.97 ATOM 156 N VAL A 25 20.655 103.567 0.901 1.00 25.89 ATOM 157 CA VAL A 25 21.853 102.785 1.123 1.00 27.64 ATOM 158 C VAL A 25 23.104 103.643 1.298 1.00 28.02 ATOM 159 O VAL A 25 23.838 103.453 2.256 1.00 28.54 ATOM 160 CB VAL A 25 22.059 101.645 0.049 1.00 33.92 ATOM 161 CG1 VAL A 25 21.976 102.124 -1.363 1.00 42.66 ATOM 162 CG2 VAL A 25 23.422 100.981 0.148 1.00 34.17 ATOM 163 N GLN A 26 23.358 104.603 0.403 1.00 30.01 ATOM 164 CA GLN A 26 24.524 105.552 0.594 1.00 29.01 ATOM 165 C GLN A 26 24.501 106.306 1.937 1.00 23.24 ATOM 166 O GLN A 26 25.468 106.434 2.603 1.00 23.31 ATOM 167 CB GLN A 26 24.550 106.540 -0.550 1.00 33.80 ATOM 168 CG GLN A 26 24.836 105.900 -1.902 1.00 34.19 ATOM 169 CD GLN A 26 24.542 106.849 -3.024 1.00 41.58 ATOM 170 OE1 GLN A 26 25.464 107.285 -3.709 1.00 49.98 ATOM 171 NE2 GLN A 26 23.274 107.256 -3.166 1.00 42.09 ATOM 172 N HIS A 27 23.322 106.682 2.364 1.00 23.85 ATOM 173 CA HIS A 27 23.112 107.283 3.693 1.00 23.25 ATOM 174 C HIS A 27 23.648 106.513 4.874 1.00 23.11 ATOM 175 O HIS A 27 24.079 107.113 5.888 1.00 20.56 ATOM 176 CB HIS A 27 21.644 107.571 3.853 1.00 23.04 ATOM 177 CG HIS A 27 21.224 107.793 5.263 1.00 26.27 ATOM 178 ND1 HIS A 27 21.217 109.045 5.866 1.00 23.31 ATOM 179 CD2 HIS A 27 20.798 106.909 6.203 1.00 26.58 ATOM 180 CE1 HIS A 27 20.756 108.923 7.102 1.00 24.06 ATOM 181 NE2 HIS A 27 20.486 107.641 7.324 1.00 25.21 ATOM 182 N GLN A 28 23.654 105.178 4.765 1.00 23.01 ATOM 183 CA GLN A 28 24.176 104.328 5.824 1.00 21.02 ATOM 184 C GLN A 28 25.593 104.633 6.196 1.00 21.55 ATOM 185 O GLN A 28 25.972 104.398 7.342 1.00 22.34 ATOM 186 CB GLN A 28 24.035 102.804 5.478 1.00 24.00 ATOM 187 CG GLN A 28 22.606 102.372 5.193 1.00 24.63 ATOM 188 CD GLN A 28 21.668 102.706 6.327 1.00 25.15 ATOM 189 OE1 GLN A 28 20.534 103.182 6.107 1.00 26.42 ATOM 190 NE2 GLN A 28 22.133 102.468 7.548 1.00 23.69 ATOM 191 N ARG A 29 26.388 105.288 5.335 1.00 21.60 ATOM 192 CA ARG A 29 27.759 105.633 5.728 1.00 19.42 ATOM 193 C ARG A 29 27.778 106.644 6.890 1.00 21.84 ATOM 194 O ARG A 29 28.777 106.761 7.671 1.00 22.32 ATOM 195 CB ARG A 29 28.517 106.153 4.534 1.00 19.61 ATOM 196 CG ARG A 29 28.233 107.660 4.260 1.00 19.12 ATOM 197 CD ARG A 29 28.878 108.058 2.983 1.00 20.27 ATOM 198 NE ARG A 29 28.245 107.424 1.859 1.00 21.71 ATOM 199 CZ ARG A 29 28.717 107.429 0.638 1.00 23.20 ATOM 200 NH1 ARG A 29 29.784 108.146 0.352 1.00 24.27 ATOM 201 NH2 ARG A 29 28.030 106.837 -0.319 1.00 26.03 ATOM 202 N VAL A 30 26.682 107.377 7.045 1.00 19.82 ATOM 203 CA VAL A 30 26.613 108.271 8.188 1.00 24.55 ATOM 204 C VAL A 30 26.604 107.443 9.486 1.00 28.64 ATOM 205 O VAL A 30 27.036 107.896 10.504 1.00 26.34 ATOM 206 CB VAL A 30 25.337 109.126 8.125 1.00 27.08 ATOM 207 CG1 VAL A 30 24.952 109.639 9.486 1.00 35.84 ATOM 208 CG2 VAL A 30 25.428 110.247 7.098 1.00 25.63 ATOM 209 N HIS A 31 26.038 106.246 9.469 1.00 29.35 ATOM 210 CA HIS A 31 25.961 105.441 10.712 1.00 31.65 ATOM 211 C HIS A 31 27.200 104.520 10.926 1.00 34.26 ATOM 212 O HIS A 31 27.176 103.713 11.812 1.00 35.55 ATOM 213 CB HIS A 31 24.665 104.599 10.678 1.00 27.79 ATOM 214 CG HIS A 31 23.405 105.406 10.571 1.00 23.55 ATOM 215 ND1 HIS A 31 23.070 106.366 11.501 1.00 21.05 ATOM 216 CD2 HIS A 31 22.363 105.357 9.676 1.00 23.02 ATOM 217 CE1 HIS A 31 21.896 106.899 11.159 1.00 21.78 ATOM 218 NE2 HIS A 31 21.427 106.274 10.087 1.00 18.75 ATOM 219 N SER A 32 28.235 104.604 10.081 1.00 33.67 ATOM 220 CA SER A 32 29.516 103.918 10.311 1.00 33.47 ATOM 221 C SER A 32 30.690 104.931 10.519 1.00 33.87 ATOM 222 O SER A 32 30.633 106.030 10.048 1.00 29.62 ATOM 223 CB SER A 32 29.811 102.981 9.127 1.00 31.82 ATOM 224 OG SER A 32 31.199 102.899 8.956 1.00 34.69 ATOM 225 N ASP A 33 31.769 104.525 11.183 1.00 34.92 ATOM 226 CA ASP A 33 32.945 105.375 11.424 1.00 36.61 ATOM 227 C ASP A 33 34.091 105.287 10.394 1.00 30.70 ATOM 228 O ASP A 33 35.130 105.907 10.543 1.00 35.18 ATOM 229 CB ASP A 33 33.523 105.047 12.780 1.00 41.12 ATOM 230 CG ASP A 33 32.591 105.351 13.872 1.00 46.87 ATOM 231 OD1 ASP A 33 31.674 106.178 13.727 1.00 50.91 ATOM 232 OD2 ASP A 33 32.774 104.738 14.912 1.00 58.93 ATOM 233 ZN ZN A 19.961 106.671 9.039 1.00 31.37 TER