HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 31 ALA ARG PRO TYR VAL CYS ALA GLU PRO ASP CYS GLY GLN SEQRES 2 A 31 THR PHE ARG PHE VAL SER ASP PHE SER ARG HIS LYS ARG SEQRES 3 A 31 LYS THR GLY HIS SER ATOM 1 N ALA A 64 41.663 129.008 -2.920 1.00 19.45 ATOM 2 CA ALA A 64 40.746 129.425 -3.968 1.00 20.98 ATOM 3 C ALA A 64 39.372 129.992 -3.490 1.00 20.14 ATOM 4 O ALA A 64 38.888 129.664 -2.414 1.00 19.37 ATOM 5 CB ALA A 64 40.510 128.240 -4.871 1.00 19.87 ATOM 6 N ARG A 65 38.777 130.844 -4.302 1.00 21.57 ATOM 7 CA ARG A 65 37.480 131.366 -4.071 1.00 24.51 ATOM 8 C ARG A 65 36.703 131.244 -5.371 1.00 25.64 ATOM 9 O ARG A 65 36.426 132.219 -6.041 1.00 25.67 ATOM 10 CB ARG A 65 37.541 132.807 -3.528 1.00 28.47 ATOM 11 CG ARG A 65 38.281 132.920 -2.223 1.00 28.54 ATOM 12 CD ARG A 65 38.467 134.378 -1.825 1.00 33.11 ATOM 13 NE ARG A 65 37.247 134.770 -1.214 1.00 32.68 ATOM 14 CZ ARG A 65 36.949 134.571 0.064 1.00 36.99 ATOM 15 NH1 ARG A 65 35.752 134.958 0.510 1.00 40.72 ATOM 16 NH2 ARG A 65 37.828 134.040 0.917 1.00 36.37 ATOM 17 N PRO A 66 36.307 130.001 -5.722 1.00 24.04 ATOM 18 CA PRO A 66 35.791 129.851 -7.079 1.00 21.66 ATOM 19 C PRO A 66 34.371 130.382 -7.272 1.00 21.43 ATOM 20 O PRO A 66 33.933 130.454 -8.373 1.00 25.05 ATOM 21 CB PRO A 66 35.866 128.348 -7.309 1.00 21.22 ATOM 22 CG PRO A 66 35.677 127.739 -5.931 1.00 23.87 ATOM 23 CD PRO A 66 36.362 128.733 -4.978 1.00 21.54 ATOM 24 N TYR A 67 33.633 130.738 -6.251 1.00 18.74 ATOM 25 CA TYR A 67 32.278 131.207 -6.463 1.00 20.58 ATOM 26 C TYR A 67 32.316 132.713 -6.604 1.00 24.08 ATOM 27 O TYR A 67 32.640 133.413 -5.649 1.00 23.79 ATOM 28 CB TYR A 67 31.402 130.800 -5.269 1.00 22.15 ATOM 29 CG TYR A 67 31.342 129.250 -5.156 1.00 22.88 ATOM 30 CD1 TYR A 67 30.483 128.516 -6.012 1.00 22.86 ATOM 31 CD2 TYR A 67 32.209 128.540 -4.312 1.00 20.52 ATOM 32 CE1 TYR A 67 30.473 127.123 -6.001 1.00 22.32 ATOM 33 CE2 TYR A 67 32.153 127.158 -4.207 1.00 20.47 ATOM 34 CZ TYR A 67 31.280 126.460 -5.056 1.00 22.48 ATOM 35 OH TYR A 67 31.238 125.145 -5.061 1.00 21.49 ATOM 36 N VAL A 68 31.992 133.202 -7.802 1.00 28.84 ATOM 37 CA VAL A 68 32.160 134.620 -8.186 1.00 27.44 ATOM 38 C VAL A 68 30.813 135.165 -8.518 1.00 26.56 ATOM 39 O VAL A 68 30.278 134.733 -9.522 1.00 31.17 ATOM 40 CB VAL A 68 33.004 134.745 -9.450 1.00 30.20 ATOM 41 CG1 VAL A 68 33.113 136.246 -9.856 1.00 33.85 ATOM 42 CG2 VAL A 68 34.390 134.173 -9.202 1.00 30.29 ATOM 43 N CYS A 69 30.214 136.007 -7.662 1.00 24.78 ATOM 44 CA CYS A 69 28.875 136.654 -7.941 1.00 28.24 ATOM 45 C CYS A 69 28.910 137.403 -9.273 1.00 28.37 ATOM 46 O CYS A 69 29.887 138.125 -9.555 1.00 23.51 ATOM 47 CB CYS A 69 28.584 137.671 -6.862 1.00 31.71 ATOM 48 SG CYS A 69 27.005 138.568 -6.770 1.00 34.47 ATOM 49 N ALA A 70 27.926 137.131 -10.119 1.00 28.30 ATOM 50 CA ALA A 70 27.841 137.733 -11.435 1.00 33.63 ATOM 51 C ALA A 70 27.001 139.012 -11.449 1.00 32.53 ATOM 52 O ALA A 70 27.033 139.680 -12.449 1.00 35.24 ATOM 53 CB ALA A 70 27.314 136.737 -12.493 1.00 33.13 ATOM 54 N GLU A 71 26.264 139.327 -10.386 1.00 33.53 ATOM 55 CA GLU A 71 25.429 140.544 -10.329 1.00 39.57 ATOM 56 C GLU A 71 26.250 141.773 -10.719 1.00 37.93 ATOM 57 O GLU A 71 27.321 141.979 -10.167 1.00 32.42 ATOM 58 CB GLU A 71 24.866 140.787 -8.924 1.00 42.01 ATOM 59 CG GLU A 71 23.903 141.991 -8.844 1.00 46.36 ATOM 60 CD GLU A 71 22.563 141.679 -9.485 1.00 51.89 ATOM 61 OE1 GLU A 71 22.235 140.459 -9.643 1.00 46.30 ATOM 62 OE2 GLU A 71 21.848 142.657 -9.826 1.00 56.93 ATOM 63 N PRO A 72 25.757 142.587 -11.682 1.00 39.53 ATOM 64 CA PRO A 72 26.542 143.769 -12.045 1.00 37.12 ATOM 65 C PRO A 72 27.013 144.588 -10.818 1.00 30.50 ATOM 66 O PRO A 72 26.192 144.872 -9.902 1.00 29.34 ATOM 67 CB PRO A 72 25.576 144.544 -12.950 1.00 40.97 ATOM 68 CG PRO A 72 24.815 143.444 -13.677 1.00 39.15 ATOM 69 CD PRO A 72 24.641 142.342 -12.640 1.00 39.47 ATOM 70 N ASP A 73 28.344 144.838 -10.793 1.00 29.33 ATOM 71 CA ASP A 73 29.063 145.578 -9.717 1.00 34.38 ATOM 72 C ASP A 73 29.098 144.975 -8.269 1.00 36.60 ATOM 73 O ASP A 73 29.447 145.685 -7.310 1.00 34.45 ATOM 74 CB ASP A 73 28.565 147.052 -9.622 1.00 37.05 ATOM 75 CG ASP A 73 28.531 147.769 -10.991 1.00 38.38 ATOM 76 OD1 ASP A 73 29.580 147.817 -11.703 1.00 34.82 ATOM 77 OD2 ASP A 73 27.425 148.280 -11.331 1.00 45.25 ATOM 78 N CYS A 74 28.753 143.692 -8.096 1.00 37.63 ATOM 79 CA CYS A 74 28.726 143.051 -6.751 1.00 38.38 ATOM 80 C CYS A 74 30.181 142.772 -6.461 1.00 35.34 ATOM 81 O CYS A 74 30.722 143.325 -5.538 1.00 31.97 ATOM 82 CB CYS A 74 27.843 141.792 -6.797 1.00 42.94 ATOM 83 SG CYS A 74 27.919 140.459 -5.552 1.00 41.34 ATOM 84 N GLY A 75 30.809 141.991 -7.334 1.00 30.00 ATOM 85 CA GLY A 75 32.195 141.686 -7.230 1.00 34.02 ATOM 86 C GLY A 75 32.579 140.720 -6.096 1.00 34.49 ATOM 87 O GLY A 75 33.752 140.491 -5.880 1.00 33.86 ATOM 88 N GLN A 76 31.636 140.221 -5.331 1.00 30.29 ATOM 89 CA GLN A 76 32.027 139.389 -4.222 1.00 30.92 ATOM 90 C GLN A 76 32.408 137.973 -4.668 1.00 29.84 ATOM 91 O GLN A 76 31.900 137.422 -5.664 1.00 25.88 ATOM 92 CB GLN A 76 30.937 139.336 -3.202 1.00 31.51 ATOM 93 CG GLN A 76 30.798 140.667 -2.520 1.00 33.30 ATOM 94 CD GLN A 76 29.828 140.554 -1.419 1.00 37.55 ATOM 95 OE1 GLN A 76 28.985 141.403 -1.257 1.00 51.46 ATOM 96 NE2 GLN A 76 29.898 139.472 -0.662 1.00 41.36 ATOM 97 N THR A 77 33.339 137.392 -3.932 1.00 28.37 ATOM 98 CA THR A 77 33.689 136.009 -4.185 1.00 26.87 ATOM 99 C THR A 77 33.620 135.166 -2.911 1.00 26.68 ATOM 100 O THR A 77 33.692 135.704 -1.840 1.00 23.39 ATOM 101 CB THR A 77 35.065 135.906 -4.819 1.00 26.35 ATOM 102 OG1 THR A 77 36.056 136.158 -3.834 1.00 24.50 ATOM 103 CG2 THR A 77 35.177 136.867 -5.956 1.00 27.51 ATOM 104 N PHE A 78 33.509 133.827 -3.051 1.00 22.97 ATOM 105 CA PHE A 78 33.325 132.940 -1.910 1.00 20.73 ATOM 106 C PHE A 78 34.111 131.627 -2.094 1.00 20.23 ATOM 107 O PHE A 78 34.274 131.128 -3.215 1.00 20.20 ATOM 108 CB PHE A 78 31.838 132.650 -1.724 1.00 20.97 ATOM 109 CG PHE A 78 31.000 133.867 -1.682 1.00 22.68 ATOM 110 CD1 PHE A 78 30.540 134.446 -2.864 1.00 25.74 ATOM 111 CD2 PHE A 78 30.665 134.455 -0.429 1.00 23.28 ATOM 112 CE1 PHE A 78 29.758 135.597 -2.826 1.00 26.04 ATOM 113 CE2 PHE A 78 29.933 135.613 -0.396 1.00 23.63 ATOM 114 CZ PHE A 78 29.464 136.185 -1.598 1.00 24.48 ATOM 115 N ARG A 79 34.618 131.090 -0.990 1.00 17.84 ATOM 116 CA ARG A 79 35.355 129.858 -0.994 1.00 16.93 ATOM 117 C ARG A 79 34.403 128.673 -0.968 1.00 15.67 ATOM 118 O ARG A 79 34.743 127.648 -1.557 1.00 14.41 ATOM 119 CB ARG A 79 36.304 129.746 0.178 1.00 17.28 ATOM 120 CG ARG A 79 37.163 128.516 0.107 1.00 18.22 ATOM 121 CD ARG A 79 38.272 128.581 1.127 1.00 18.97 ATOM 122 NE ARG A 79 39.190 129.546 0.625 1.00 20.50 ATOM 123 CZ ARG A 79 39.687 130.558 1.310 1.00 24.02 ATOM 124 NH1 ARG A 79 40.462 131.383 0.665 1.00 25.61 ATOM 125 NH2 ARG A 79 39.472 130.719 2.623 1.00 26.74 ATOM 126 N PHE A 80 33.241 128.801 -0.325 1.00 14.22 ATOM 127 CA PHE A 80 32.399 127.641 -0.074 1.00 14.37 ATOM 128 C PHE A 80 31.018 127.838 -0.621 1.00 14.57 ATOM 129 O PHE A 80 30.479 128.964 -0.624 1.00 14.59 ATOM 130 CB PHE A 80 32.309 127.335 1.394 1.00 15.12 ATOM 131 CG PHE A 80 33.644 127.115 2.029 1.00 15.05 ATOM 132 CD1 PHE A 80 34.319 125.933 1.794 1.00 15.23 ATOM 133 CD2 PHE A 80 34.215 128.072 2.821 1.00 15.00 ATOM 134 CE1 PHE A 80 35.559 125.712 2.322 1.00 15.30 ATOM 135 CE2 PHE A 80 35.457 127.855 3.378 1.00 16.06 ATOM 136 CZ PHE A 80 36.120 126.635 3.162 1.00 15.97 ATOM 137 N VAL A 81 30.483 126.777 -1.176 1.00 14.17 ATOM 138 CA VAL A 81 29.228 126.886 -1.883 1.00 14.61 ATOM 139 C VAL A 81 28.077 127.404 -1.029 1.00 15.82 ATOM 140 O VAL A 81 27.224 128.221 -1.489 1.00 16.31 ATOM 141 CB VAL A 81 28.836 125.596 -2.602 1.00 15.68 ATOM 142 CG1 VAL A 81 28.456 124.456 -1.706 1.00 15.56 ATOM 143 CG2 VAL A 81 27.677 125.889 -3.543 1.00 17.06 ATOM 144 N SER A 82 28.029 126.953 0.205 1.00 16.42 ATOM 145 CA SER A 82 26.977 127.377 1.110 1.00 17.52 ATOM 146 C SER A 82 27.023 128.912 1.342 1.00 19.40 ATOM 147 O SER A 82 25.991 129.513 1.536 1.00 17.27 ATOM 148 CB SER A 82 27.151 126.765 2.490 1.00 17.53 ATOM 149 OG SER A 82 26.028 127.125 3.306 1.00 15.15 ATOM 150 N ASP A 83 28.224 129.480 1.355 1.00 19.12 ATOM 151 CA ASP A 83 28.354 130.906 1.616 1.00 22.49 ATOM 152 C ASP A 83 27.879 131.711 0.389 1.00 23.02 ATOM 153 O ASP A 83 27.352 132.842 0.549 1.00 23.62 ATOM 154 CB ASP A 83 29.810 131.298 1.936 1.00 20.67 ATOM 155 CG ASP A 83 30.358 130.630 3.228 1.00 20.21 ATOM 156 OD1 ASP A 83 29.569 130.385 4.185 1.00 19.72 ATOM 157 OD2 ASP A 83 31.592 130.392 3.251 1.00 19.70 ATOM 158 N PHE A 84 28.130 131.174 -0.794 1.00 19.46 ATOM 159 CA PHE A 84 27.669 131.794 -2.031 1.00 23.03 ATOM 160 C PHE A 84 26.150 131.693 -2.093 1.00 26.12 ATOM 161 O PHE A 84 25.491 132.684 -2.396 1.00 25.95 ATOM 162 CB PHE A 84 28.274 131.124 -3.266 1.00 22.88 ATOM 163 CG PHE A 84 27.868 131.720 -4.568 1.00 24.10 ATOM 164 CD1 PHE A 84 27.671 133.120 -4.716 1.00 26.54 ATOM 165 CD2 PHE A 84 27.716 130.911 -5.688 1.00 25.45 ATOM 166 CE1 PHE A 84 27.282 133.667 -5.947 1.00 26.82 ATOM 167 CE2 PHE A 84 27.357 131.445 -6.941 1.00 28.68 ATOM 168 CZ PHE A 84 27.144 132.850 -7.077 1.00 28.44 ATOM 169 N SER A 85 25.599 130.513 -1.794 1.00 24.99 ATOM 170 CA SER A 85 24.137 130.373 -1.651 1.00 25.13 ATOM 171 C SER A 85 23.533 131.381 -0.645 1.00 27.97 ATOM 172 O SER A 85 22.460 131.938 -0.883 1.00 25.80 ATOM 173 CB SER A 85 23.690 128.987 -1.219 1.00 24.18 ATOM 174 OG SER A 85 24.136 128.002 -2.099 1.00 26.25 ATOM 175 N ARG A 86 24.204 131.601 0.466 1.00 26.39 ATOM 176 CA ARG A 86 23.715 132.531 1.445 1.00 29.01 ATOM 177 C ARG A 86 23.642 133.969 0.895 1.00 29.64 ATOM 178 O ARG A 86 22.672 134.692 1.165 1.00 30.20 ATOM 179 CB ARG A 86 24.575 132.521 2.677 1.00 28.74 ATOM 180 CG ARG A 86 24.055 133.417 3.775 1.00 33.49 ATOM 181 CD ARG A 86 24.914 133.368 5.055 1.00 38.41 ATOM 182 NE ARG A 86 25.340 132.040 5.559 1.00 41.32 ATOM 183 CZ ARG A 86 24.686 131.236 6.427 1.00 47.22 ATOM 184 NH1 ARG A 86 23.473 131.512 6.919 1.00 48.41 ATOM 185 NH2 ARG A 86 25.270 130.090 6.812 1.00 48.45 ATOM 186 N HIS A 87 24.692 134.373 0.212 1.00 29.25 ATOM 187 CA HIS A 87 24.768 135.647 -0.415 1.00 29.89 ATOM 188 C HIS A 87 23.630 135.828 -1.436 1.00 33.35 ATOM 189 O HIS A 87 22.952 136.855 -1.443 1.00 34.56 ATOM 190 CB HIS A 87 26.117 135.828 -1.084 1.00 30.12 ATOM 191 CG HIS A 87 26.181 137.056 -1.938 1.00 33.54 ATOM 192 ND1 HIS A 87 26.316 138.328 -1.401 1.00 35.02 ATOM 193 CD2 HIS A 87 26.166 137.213 -3.281 1.00 30.93 ATOM 194 CE1 HIS A 87 26.346 139.217 -2.376 1.00 36.52 ATOM 195 NE2 HIS A 87 26.226 138.571 -3.523 1.00 37.91 ATOM 196 N LYS A 88 23.406 134.826 -2.257 1.00 31.30 ATOM 197 CA LYS A 88 22.319 134.856 -3.233 1.00 35.44 ATOM 198 C LYS A 88 20.992 135.031 -2.533 1.00 38.55 ATOM 199 O LYS A 88 20.217 135.882 -2.897 1.00 36.51 ATOM 200 CB LYS A 88 22.318 133.596 -4.103 1.00 35.12 ATOM 201 CG LYS A 88 23.387 133.705 -5.185 1.00 38.64 ATOM 202 CD LYS A 88 23.967 132.406 -5.677 1.00 45.34 ATOM 203 CE LYS A 88 22.958 131.270 -5.787 1.00 46.86 ATOM 204 NZ LYS A 88 23.461 130.222 -6.711 1.00 50.68 ATOM 205 N ARG A 89 20.763 134.269 -1.485 1.00 37.30 ATOM 206 CA ARG A 89 19.488 134.296 -0.806 1.00 44.11 ATOM 207 C ARG A 89 19.275 135.665 -0.155 1.00 47.03 ATOM 208 O ARG A 89 18.175 136.168 -0.166 1.00 45.80 ATOM 209 CB ARG A 89 19.438 133.160 0.219 1.00 44.83 ATOM 210 CG ARG A 89 18.089 132.796 0.804 1.00 49.38 ATOM 211 CD ARG A 89 18.137 131.500 1.642 1.00 47.35 ATOM 212 NE ARG A 89 19.138 131.502 2.768 1.00 49.96 ATOM 213 CZ ARG A 89 20.350 130.871 2.823 1.00 49.88 ATOM 214 NH1 ARG A 89 21.057 131.020 3.950 1.00 51.04 ATOM 215 NH2 ARG A 89 20.882 130.099 1.812 1.00 37.98 ATOM 216 N LYS A 90 20.331 136.279 0.363 1.00 44.90 ATOM 217 CA LYS A 90 20.188 137.507 1.127 1.00 44.24 ATOM 218 C LYS A 90 20.057 138.698 0.210 1.00 44.71 ATOM 219 O LYS A 90 19.307 139.593 0.500 1.00 45.38 ATOM 220 CB LYS A 90 21.366 137.745 2.055 1.00 46.81 ATOM 221 CG LYS A 90 20.972 138.236 3.438 1.00 58.12 ATOM 222 CD LYS A 90 21.985 137.808 4.486 1.00 62.85 ATOM 223 CE LYS A 90 21.771 136.342 4.872 1.00 67.39 ATOM 224 NZ LYS A 90 22.790 135.899 5.856 1.00 71.43 ATOM 225 N THR A 91 20.805 138.711 -0.878 1.00 39.70 ATOM 226 CA THR A 91 20.823 139.811 -1.761 1.00 34.99 ATOM 227 C THR A 91 19.880 139.711 -2.953 1.00 34.57 ATOM 228 O THR A 91 19.688 140.709 -3.585 1.00 37.37 ATOM 229 CB THR A 91 22.240 140.014 -2.368 1.00 35.65 ATOM 230 OG1 THR A 91 22.559 138.938 -3.271 1.00 31.87 ATOM 231 CG2 THR A 91 23.273 140.166 -1.294 1.00 37.13 ATOM 232 N GLY A 92 19.386 138.539 -3.332 1.00 33.51 ATOM 233 CA GLY A 92 18.734 138.326 -4.672 1.00 31.09 ATOM 234 C GLY A 92 19.665 138.275 -5.883 1.00 34.68 ATOM 235 O GLY A 92 19.208 138.147 -7.027 1.00 35.61 ATOM 236 N HIS A 93 20.989 138.308 -5.679 1.00 35.65 ATOM 237 CA HIS A 93 21.941 138.222 -6.836 1.00 32.59 ATOM 238 C HIS A 93 21.887 136.827 -7.518 1.00 38.05 ATOM 239 O HIS A 93 21.654 135.847 -6.847 1.00 34.43 ATOM 240 CB HIS A 93 23.312 138.653 -6.360 1.00 33.53 ATOM 241 CG HIS A 93 23.360 140.095 -5.883 1.00 42.03 ATOM 242 ND1 HIS A 93 24.533 140.814 -5.759 1.00 47.55 ATOM 243 CD2 HIS A 93 22.374 140.956 -5.510 1.00 40.78 ATOM 244 CE1 HIS A 93 24.288 142.019 -5.280 1.00 41.25 ATOM 245 NE2 HIS A 93 22.977 142.135 -5.140 1.00 45.98 ATOM 246 N SER A 94 22.019 136.767 -8.849 1.00 46.64 ATOM 247 CA SER A 94 21.595 135.622 -9.711 1.00 48.74 ATOM 248 C SER A 94 20.127 135.248 -9.553 1.00 48.25 ATOM 249 O SER A 94 19.640 134.407 -10.322 1.00 60.04 ATOM 250 CB SER A 94 22.500 134.398 -9.508 1.00 49.84 ATOM 251 OG SER A 94 23.806 134.865 -9.153 1.00 58.24 TER