HEADER DNA BINDING PROTEIN/DNA 31-DEC-69 6JNM TITLE REF6 ZnF2-4-NAC004-mC3 complex COMPND MOL_ID: 1; COMPND 2 MOLECULE: Lysine-specific demethylase REF6; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.11.-; COMPND 5 ENGINEERED: YES; EXPDTA X-RAY DIFFRACTION REMARK 2 RESOLUTION. 2.05 ANGSTORMS DBREF 6JNM A 1260 1360 UNP Q9STM3 REF6_ARATH 1260 1360 SEQRES 1 A 30 ASP ARG PRO LEU LYS CYS PRO TRP LYS GLY CYS LYS MET SEQRES 2 A 30 THR PHE LYS TRP ALA TRP SER ARG THR GLU HIS ILE ARG SEQRES 3 A 30 VAL HIS THR GLY ATOM 1 N ASP A 34 33.850 104.595 9.318 1.00 28.67 ATOM 2 CA ASP A 34 34.752 104.564 8.230 1.00 25.35 ATOM 3 C ASP A 34 34.731 105.913 7.534 1.00 25.20 ATOM 4 O ASP A 34 33.626 106.545 7.337 1.00 22.17 ATOM 5 CB ASP A 34 34.229 103.554 7.244 1.00 27.29 ATOM 6 CG ASP A 34 34.400 102.089 7.759 1.00 35.39 ATOM 7 OD1 ASP A 34 34.924 101.895 8.882 1.00 38.85 ATOM 8 OD2 ASP A 34 34.009 101.132 7.041 1.00 38.08 ATOM 9 N ARG A 35 35.922 106.309 7.127 1.00 25.08 ATOM 10 CA ARG A 35 36.165 107.611 6.473 1.00 24.63 ATOM 11 C ARG A 35 37.018 107.238 5.301 1.00 22.95 ATOM 12 O ARG A 35 38.223 107.414 5.343 1.00 21.11 ATOM 13 CB ARG A 35 36.852 108.568 7.437 1.00 24.20 ATOM 14 CG ARG A 35 36.017 108.827 8.688 1.00 26.02 ATOM 15 CD ARG A 35 36.585 109.922 9.602 1.00 26.04 ATOM 16 NE ARG A 35 36.424 111.242 8.956 1.00 26.85 ATOM 17 CZ ARG A 35 35.301 111.945 8.920 1.00 25.37 ATOM 18 NH1 ARG A 35 34.183 111.542 9.544 1.00 26.30 ATOM 19 NH2 ARG A 35 35.260 113.094 8.237 1.00 24.77 ATOM 20 N PRO A 36 36.393 106.717 4.239 1.00 23.88 ATOM 21 CA PRO A 36 37.199 106.144 3.142 1.00 27.74 ATOM 22 C PRO A 36 37.955 107.156 2.247 1.00 29.61 ATOM 23 O PRO A 36 38.776 106.716 1.445 1.00 28.71 ATOM 24 CB PRO A 36 36.144 105.361 2.292 1.00 24.85 ATOM 25 CG PRO A 36 35.011 105.134 3.248 1.00 27.93 ATOM 26 CD PRO A 36 34.967 106.408 4.048 1.00 26.91 ATOM 27 N LEU A 37 37.647 108.461 2.296 1.00 26.14 ATOM 28 CA LEU A 37 38.280 109.403 1.362 1.00 23.19 ATOM 29 C LEU A 37 39.329 110.168 2.097 1.00 23.57 ATOM 30 O LEU A 37 39.187 110.444 3.277 1.00 22.59 ATOM 31 CB LEU A 37 37.257 110.314 0.760 1.00 24.13 ATOM 32 CG LEU A 37 36.030 109.576 0.202 1.00 26.68 ATOM 33 CD1 LEU A 37 34.914 110.551 -0.155 1.00 27.67 ATOM 34 CD2 LEU A 37 36.331 108.671 -1.006 1.00 26.02 ATOM 35 N LYS A 38 40.394 110.503 1.388 1.00 22.78 ATOM 36 CA LYS A 38 41.584 111.075 1.979 1.00 27.16 ATOM 37 C LYS A 38 41.791 112.402 1.308 1.00 24.15 ATOM 38 O LYS A 38 41.431 112.560 0.163 1.00 21.04 ATOM 39 CB LYS A 38 42.779 110.198 1.682 1.00 33.98 ATOM 40 CG LYS A 38 42.927 109.049 2.654 1.00 46.39 ATOM 41 CD LYS A 38 44.041 109.362 3.688 1.00 64.34 ATOM 42 CE LYS A 38 43.836 108.751 5.083 1.00 67.27 ATOM 43 NZ LYS A 38 43.974 107.276 5.032 1.00 72.26 ATOM 44 N CYS A 39 42.386 113.333 2.027 1.00 21.47 ATOM 45 CA CYS A 39 42.751 114.613 1.450 1.00 21.47 ATOM 46 C CYS A 39 43.988 114.348 0.639 1.00 22.47 ATOM 47 O CYS A 39 44.901 113.715 1.185 1.00 19.48 ATOM 48 CB CYS A 39 43.146 115.614 2.530 1.00 19.06 ATOM 49 SG CYS A 39 43.627 117.238 1.856 1.00 16.50 ATOM 50 N PRO A 40 44.100 114.919 -0.584 1.00 20.73 ATOM 51 CA PRO A 40 45.332 114.672 -1.295 1.00 21.35 ATOM 52 C PRO A 40 46.486 115.619 -0.942 1.00 22.07 ATOM 53 O PRO A 40 47.507 115.520 -1.533 1.00 23.33 ATOM 54 CB PRO A 40 44.905 114.904 -2.742 1.00 22.43 ATOM 55 CG PRO A 40 43.933 116.070 -2.569 1.00 22.45 ATOM 56 CD PRO A 40 43.130 115.645 -1.411 1.00 21.26 ATOM 57 N TRP A 41 46.366 116.517 -0.007 1.00 20.27 ATOM 58 CA TRP A 41 47.387 117.514 0.201 1.00 21.89 ATOM 59 C TRP A 41 48.387 116.867 1.089 1.00 24.71 ATOM 60 O TRP A 41 48.039 116.251 2.105 1.00 22.96 ATOM 61 CB TRP A 41 46.853 118.707 0.990 1.00 20.65 ATOM 62 CG TRP A 41 47.677 119.935 0.917 1.00 21.46 ATOM 63 CD1 TRP A 41 48.599 120.428 1.868 1.00 22.33 ATOM 64 CD2 TRP A 41 47.648 120.897 -0.135 1.00 22.03 ATOM 65 NE1 TRP A 41 49.087 121.649 1.434 1.00 22.16 ATOM 66 CE2 TRP A 41 48.524 121.951 0.228 1.00 22.80 ATOM 67 CE3 TRP A 41 46.941 120.986 -1.327 1.00 21.83 ATOM 68 CZ2 TRP A 41 48.718 123.033 -0.571 1.00 24.00 ATOM 69 CZ3 TRP A 41 47.105 122.064 -2.102 1.00 22.87 ATOM 70 CH2 TRP A 41 48.007 123.071 -1.745 1.00 24.12 ATOM 71 N LYS A 42 49.636 117.076 0.762 1.00 25.39 ATOM 72 CA LYS A 42 50.690 116.351 1.439 1.00 27.26 ATOM 73 C LYS A 42 50.774 116.725 2.889 1.00 24.01 ATOM 74 O LYS A 42 50.931 117.910 3.190 1.00 23.29 ATOM 75 CB LYS A 42 52.015 116.687 0.747 1.00 31.80 ATOM 76 CG LYS A 42 53.267 116.381 1.530 1.00 33.90 ATOM 77 CD LYS A 42 53.621 114.945 1.409 1.00 37.57 ATOM 78 CE LYS A 42 55.149 114.813 1.618 1.00 40.18 ATOM 79 NZ LYS A 42 55.446 113.361 1.615 1.00 38.91 ATOM 80 N GLY A 43 50.804 115.716 3.748 1.00 23.07 ATOM 81 CA GLY A 43 50.780 115.933 5.192 1.00 25.54 ATOM 82 C GLY A 43 49.422 116.058 5.860 1.00 28.24 ATOM 83 O GLY A 43 49.342 116.004 7.060 1.00 29.97 ATOM 84 N CYS A 44 48.330 116.234 5.127 1.00 28.34 ATOM 85 CA CYS A 44 47.078 116.556 5.784 1.00 25.63 ATOM 86 C CYS A 44 46.448 115.241 6.167 1.00 25.60 ATOM 87 O CYS A 44 46.350 114.371 5.367 1.00 25.32 ATOM 88 CB CYS A 44 46.169 117.391 4.855 1.00 25.51 ATOM 89 SG CYS A 44 44.502 117.604 5.477 1.00 19.93 ATOM 90 N LYS A 45 45.941 115.129 7.377 1.00 26.48 ATOM 91 CA LYS A 45 45.325 113.875 7.819 1.00 30.30 ATOM 92 C LYS A 45 43.840 113.819 7.684 1.00 29.03 ATOM 93 O LYS A 45 43.248 112.802 8.053 1.00 28.27 ATOM 94 CB LYS A 45 45.609 113.611 9.327 1.00 37.68 ATOM 95 CG LYS A 45 47.074 113.679 9.749 1.00 43.61 ATOM 96 CD LYS A 45 47.844 112.494 9.198 1.00 48.52 ATOM 97 CE LYS A 45 49.038 112.902 8.368 1.00 52.67 ATOM 98 NZ LYS A 45 49.855 111.684 8.137 1.00 58.38 ATOM 99 N MET A 46 43.216 114.871 7.179 1.00 25.59 ATOM 100 CA MET A 46 41.752 114.884 7.104 1.00 24.25 ATOM 101 C MET A 46 41.261 113.748 6.222 1.00 20.94 ATOM 102 O MET A 46 41.852 113.411 5.175 1.00 21.86 ATOM 103 CB MET A 46 41.296 116.236 6.516 1.00 28.94 ATOM 104 CG MET A 46 39.790 116.496 6.576 1.00 33.60 ATOM 105 SD MET A 46 39.226 116.722 8.285 1.00 39.26 ATOM 106 CE MET A 46 40.677 117.520 9.073 1.00 39.95 ATOM 107 N THR A 47 40.162 113.157 6.618 1.00 18.57 ATOM 108 CA THR A 47 39.484 112.116 5.841 1.00 18.73 ATOM 109 C THR A 47 38.030 112.485 5.801 1.00 17.58 ATOM 110 O THR A 47 37.579 113.280 6.626 1.00 17.37 ATOM 111 CB THR A 47 39.634 110.731 6.510 1.00 20.99 ATOM 112 OG1 THR A 47 39.002 110.791 7.765 1.00 18.86 ATOM 113 CG2 THR A 47 41.137 110.388 6.753 1.00 20.86 ATOM 114 N PHE A 48 37.288 111.863 4.907 1.00 17.01 ATOM 115 CA PHE A 48 35.927 112.190 4.636 1.00 16.71 ATOM 116 C PHE A 48 35.095 110.949 4.370 1.00 19.86 ATOM 117 O PHE A 48 35.606 109.858 3.992 1.00 17.09 ATOM 118 CB PHE A 48 35.846 113.024 3.372 1.00 17.25 ATOM 119 CG PHE A 48 36.856 114.124 3.348 1.00 18.30 ATOM 120 CD1 PHE A 48 38.155 113.868 2.857 1.00 18.74 ATOM 121 CD2 PHE A 48 36.562 115.365 3.914 1.00 18.12 ATOM 122 CE1 PHE A 48 39.096 114.878 2.920 1.00 19.87 ATOM 123 CE2 PHE A 48 37.516 116.374 3.989 1.00 18.75 ATOM 124 CZ PHE A 48 38.763 116.129 3.469 1.00 20.06 ATOM 125 N LYS A 49 33.795 111.168 4.460 1.00 17.34 ATOM 126 CA LYS A 49 32.851 110.230 3.987 1.00 17.07 ATOM 127 C LYS A 49 32.227 110.645 2.710 1.00 17.09 ATOM 128 O LYS A 49 31.670 109.774 2.001 1.00 15.67 ATOM 129 CB LYS A 49 31.752 110.080 5.036 1.00 18.82 ATOM 130 CG LYS A 49 32.215 109.666 6.413 1.00 19.12 ATOM 131 CD LYS A 49 30.976 109.275 7.208 1.00 19.99 ATOM 132 CE LYS A 49 31.268 109.025 8.665 1.00 22.54 ATOM 133 NZ LYS A 49 30.000 108.728 9.419 1.00 23.17 ATOM 134 N TRP A 50 32.159 111.967 2.431 1.00 16.14 ATOM 135 CA TRP A 50 31.485 112.414 1.230 1.00 15.33 ATOM 136 C TRP A 50 32.477 113.140 0.313 1.00 15.05 ATOM 137 O TRP A 50 33.281 113.989 0.778 1.00 16.69 ATOM 138 CB TRP A 50 30.334 113.335 1.518 1.00 17.69 ATOM 139 CG TRP A 50 29.355 112.854 2.415 1.00 18.26 ATOM 140 CD1 TRP A 50 29.277 113.158 3.697 1.00 19.56 ATOM 141 CD2 TRP A 50 28.287 111.966 2.125 1.00 19.09 ATOM 142 NE1 TRP A 50 28.224 112.532 4.267 1.00 20.01 ATOM 143 CE2 TRP A 50 27.591 111.774 3.321 1.00 20.68 ATOM 144 CE3 TRP A 50 27.868 111.291 0.969 1.00 19.26 ATOM 145 CZ2 TRP A 50 26.441 110.957 3.420 1.00 18.72 ATOM 146 CZ3 TRP A 50 26.726 110.493 1.040 1.00 21.14 ATOM 147 CH2 TRP A 50 26.016 110.332 2.259 1.00 22.38 ATOM 148 N ALA A 51 32.364 112.847 -0.978 1.00 13.99 ATOM 149 CA ALA A 51 33.234 113.398 -2.013 1.00 15.13 ATOM 150 C ALA A 51 33.133 114.986 -2.051 1.00 14.23 ATOM 151 O ALA A 51 34.134 115.661 -2.182 1.00 14.98 ATOM 152 CB ALA A 51 32.838 112.831 -3.372 1.00 15.14 ATOM 153 N TRP A 52 31.937 115.517 -1.940 1.00 13.53 ATOM 154 CA TRP A 52 31.786 116.975 -1.926 1.00 13.77 ATOM 155 C TRP A 52 32.545 117.620 -0.754 1.00 13.84 ATOM 156 O TRP A 52 33.169 118.652 -0.911 1.00 13.54 ATOM 157 CB TRP A 52 30.317 117.382 -1.909 1.00 13.07 ATOM 158 CG TRP A 52 30.183 118.864 -2.059 1.00 13.07 ATOM 159 CD1 TRP A 52 29.770 119.738 -1.129 1.00 12.88 ATOM 160 CD2 TRP A 52 30.597 119.638 -3.174 1.00 12.60 ATOM 161 NE1 TRP A 52 29.849 121.006 -1.597 1.00 12.85 ATOM 162 CE2 TRP A 52 30.393 120.991 -2.835 1.00 12.53 ATOM 163 CE3 TRP A 52 31.111 119.322 -4.418 1.00 13.42 ATOM 164 CZ2 TRP A 52 30.656 122.049 -3.720 1.00 13.08 ATOM 165 CZ3 TRP A 52 31.406 120.370 -5.324 1.00 14.40 ATOM 166 CH2 TRP A 52 31.209 121.730 -4.941 1.00 13.14 ATOM 167 N SER A 53 32.513 116.957 0.399 1.00 13.73 ATOM 168 CA SER A 53 33.215 117.409 1.545 1.00 15.17 ATOM 169 C SER A 53 34.743 117.522 1.268 1.00 14.91 ATOM 170 O SER A 53 35.373 118.542 1.575 1.00 12.41 ATOM 171 CB SER A 53 32.826 116.567 2.730 1.00 16.45 ATOM 172 OG SER A 53 33.331 117.198 3.847 1.00 22.50 ATOM 173 N ARG A 54 35.322 116.508 0.625 1.00 13.36 ATOM 174 CA ARG A 54 36.722 116.573 0.198 1.00 14.51 ATOM 175 C ARG A 54 36.981 117.698 -0.813 1.00 14.12 ATOM 176 O ARG A 54 37.990 118.403 -0.708 1.00 14.36 ATOM 177 CB ARG A 54 37.167 115.220 -0.349 1.00 16.02 ATOM 178 CG ARG A 54 38.542 115.097 -0.968 1.00 18.11 ATOM 179 CD ARG A 54 38.753 113.636 -1.442 1.00 20.60 ATOM 180 NE ARG A 54 40.022 113.500 -2.111 1.00 23.43 ATOM 181 CZ ARG A 54 40.249 113.871 -3.387 1.00 25.73 ATOM 182 NH1 ARG A 54 39.285 114.359 -4.176 1.00 24.31 ATOM 183 NH2 ARG A 54 41.465 113.754 -3.890 1.00 27.40 ATOM 184 N THR A 55 36.093 117.852 -1.755 1.00 12.47 ATOM 185 CA THR A 55 36.228 118.936 -2.709 1.00 14.44 ATOM 186 C THR A 55 36.313 120.319 -2.069 1.00 14.22 ATOM 187 O THR A 55 37.256 121.097 -2.334 1.00 13.96 ATOM 188 CB THR A 55 35.118 118.850 -3.748 1.00 15.60 ATOM 189 OG1 THR A 55 35.252 117.611 -4.461 1.00 16.51 ATOM 190 CG2 THR A 55 35.123 120.064 -4.800 1.00 15.53 ATOM 191 N GLU A 56 35.391 120.606 -1.160 1.00 13.27 ATOM 192 CA GLU A 56 35.356 121.950 -0.561 1.00 12.24 ATOM 193 C GLU A 56 36.586 122.087 0.323 1.00 12.24 ATOM 194 O GLU A 56 37.238 123.106 0.344 1.00 10.76 ATOM 195 CB GLU A 56 34.079 122.174 0.236 1.00 11.87 ATOM 196 CG GLU A 56 32.810 122.044 -0.574 1.00 12.74 ATOM 197 CD GLU A 56 31.808 123.179 -0.275 1.00 14.91 ATOM 198 OE1 GLU A 56 32.000 124.294 -0.819 1.00 15.80 ATOM 199 OE2 GLU A 56 30.857 122.950 0.475 1.00 13.96 ATOM 200 N HIS A 57 36.959 121.012 0.998 1.00 11.91 ATOM 201 CA HIS A 57 38.068 121.043 1.892 1.00 12.65 ATOM 202 C HIS A 57 39.395 121.409 1.221 1.00 14.33 ATOM 203 O HIS A 57 40.286 122.080 1.811 1.00 14.28 ATOM 204 CB HIS A 57 38.198 119.707 2.639 1.00 13.76 ATOM 205 CG HIS A 57 39.496 119.565 3.335 1.00 15.16 ATOM 206 ND1 HIS A 57 39.746 120.110 4.592 1.00 16.90 ATOM 207 CD2 HIS A 57 40.664 119.015 2.920 1.00 15.30 ATOM 208 CE1 HIS A 57 40.997 119.837 4.933 1.00 15.84 ATOM 209 NE2 HIS A 57 41.546 119.126 3.959 1.00 16.50 ATOM 210 N ILE A 58 39.571 120.908 0.018 1.00 15.36 ATOM 211 CA ILE A 58 40.812 121.174 -0.687 1.00 17.40 ATOM 212 C ILE A 58 41.010 122.665 -0.889 1.00 17.34 ATOM 213 O ILE A 58 42.138 123.117 -0.882 1.00 15.67 ATOM 214 CB ILE A 58 40.892 120.418 -2.015 1.00 17.83 ATOM 215 CG1 ILE A 58 41.086 118.903 -1.724 1.00 18.83 ATOM 216 CG2 ILE A 58 42.114 120.847 -2.837 1.00 20.40 ATOM 217 CD1 ILE A 58 40.649 118.050 -2.905 1.00 18.02 ATOM 218 N ARG A 59 39.930 123.415 -0.972 1.00 16.30 ATOM 219 CA ARG A 59 40.038 124.876 -1.099 1.00 18.29 ATOM 220 C ARG A 59 40.649 125.568 0.084 1.00 17.89 ATOM 221 O ARG A 59 41.231 126.637 -0.077 1.00 17.79 ATOM 222 CB ARG A 59 38.690 125.503 -1.458 1.00 17.30 ATOM 223 CG ARG A 59 38.087 124.829 -2.685 1.00 16.50 ATOM 224 CD ARG A 59 36.821 125.520 -3.078 1.00 16.14 ATOM 225 NE ARG A 59 35.878 124.719 -3.851 1.00 15.08 ATOM 226 CZ ARG A 59 34.642 124.466 -3.459 1.00 14.32 ATOM 227 NH1 ARG A 59 34.140 124.933 -2.305 1.00 13.34 ATOM 228 NH2 ARG A 59 33.871 123.721 -4.216 1.00 16.29 ATOM 229 N VAL A 60 40.551 124.959 1.254 1.00 17.44 ATOM 230 CA VAL A 60 41.239 125.457 2.438 1.00 18.79 ATOM 231 C VAL A 60 42.750 125.461 2.227 1.00 20.68 ATOM 232 O VAL A 60 43.391 126.355 2.645 1.00 21.69 ATOM 233 CB VAL A 60 40.973 124.575 3.657 1.00 20.83 ATOM 234 CG1 VAL A 60 41.759 125.059 4.860 1.00 22.73 ATOM 235 CG2 VAL A 60 39.499 124.649 4.039 1.00 22.39 ATOM 236 N HIS A 61 43.305 124.438 1.598 1.00 21.24 ATOM 237 CA HIS A 61 44.736 124.422 1.241 1.00 20.37 ATOM 238 C HIS A 61 45.057 125.394 0.109 1.00 21.38 ATOM 239 O HIS A 61 46.024 126.092 0.212 1.00 24.53 ATOM 240 CB HIS A 61 45.249 123.030 0.877 1.00 18.84 ATOM 241 CG HIS A 61 45.078 121.994 1.964 1.00 17.14 ATOM 242 ND1 HIS A 61 45.805 122.029 3.119 1.00 17.81 ATOM 243 CD2 HIS A 61 44.286 120.887 2.053 1.00 17.31 ATOM 244 CE1 HIS A 61 45.456 121.022 3.903 1.00 18.95 ATOM 245 NE2 HIS A 61 44.545 120.292 3.277 1.00 18.70 ATOM 246 N THR A 62 44.266 125.454 -0.945 1.00 21.28 ATOM 247 CA THR A 62 44.667 126.180 -2.112 1.00 22.32 ATOM 248 C THR A 62 44.323 127.673 -1.938 1.00 24.45 ATOM 249 O THR A 62 44.877 128.487 -2.608 1.00 25.96 ATOM 250 CB THR A 62 43.974 125.752 -3.408 1.00 20.78 ATOM 251 OG1 THR A 62 42.565 126.057 -3.335 1.00 21.96 ATOM 252 CG2 THR A 62 44.190 124.308 -3.748 1.00 19.46 ATOM 253 N GLY A 63 43.372 128.035 -1.113 1.00 20.49 ATOM 254 CA GLY A 63 43.072 129.416 -0.965 1.00 21.09 ATOM 255 C GLY A 63 42.095 129.876 -2.033 1.00 20.97 ATOM 256 O GLY A 63 41.638 130.990 -1.970 1.00 22.87 ATOM 257 ZN ZN A 43.598 118.561 3.687 1.00 18.28 TER